FvH4_4g35430

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
32755710 .. 32760049
4340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35430.t1

Sequence Viewer

Length: 3642 bp
ATGGGTGGTGTTGGCAAGACAACACTTGCCACGGCTATTTTTAATAGACTTGTTCGTCAATTTGATGGACACAGTTTCATCTCAAATGTTAGAGAAGTCTCCGCAGGACATAAGGGCTTGGTATCTCTTCAAAACAAACTTATCAACAATCTTTCCCCTGGTAAGATGCCCGTGACTGACATTGAGACTGGTATTTCTGCGATCAAGGCACTTGTATATGACAAGCGAGTTCTTGTTGTTCTGGATGATGTTGATAATGTTAACCAGCTAAGTGCTTCAGTTGGCAAAGGAGAATGGTTCAATGAAGGAAGCCGAATTATCATTACCACGAGGGATAAAGGACTATTACCCAGTTATCTTGTGAATTATAAGTTGTATGAGGTCAGGGAGTTGCAGGAGTCCCAGGCGCTACAACTGTTTAGTTACCATGCACTGAGAAGAGATAAACCCACAGGAAATTTCTTGGATCTCTCTGAAAAAATTGTGTCTCTTACAGGAGGACTACCGTTAGCTCTTGAAGTATTTGGTTCTTTTCTATTTGATAAGAGGAGAATAGAGGAATGGACAGATGCTCTGCACAAACTGAAAAAGATTCGGCCACAACATCTTCAGGATGTGTTGAAGATAAGTTATGACGCGCTAGACGAGCAAGAAAAGTGTATCTTCTTGGATATTGCATGCTTGCTTGTAAAAATGAATCCCAAGAGAGAAGATGCAATTGACATATTGAGGAGCTGTGGGTTTGATGGTGAGATAGCAATTGGTGTCCTCACTGCAAAATCACTTATTAAGATTACAGAAGACACTACATTGTGGATGCACGATCAAGTTAGGGACATGGGAAGACAAATCGTGATACACGAAAACCTTTTGGATCCTGGCATGCGTAGTAGACTGTGGGAGCATGATAAAATTATTAATGTCTTCAAGGATGATAAGGGGACAAGATGTATACAAGGCATAGTCCTAGAGGACCTAGACACTGAATGGAAATTGAATGGTCCAAAGGATCTAACCGGCGACAAAATTTCTTGGAACAACTTTCAGAGTAGCCCCAATTTTACCTCTGCTATTACATACTTAAAGGAAAGATACAAAGTATATCTTCAAAATCAAGCAGAGAAAAAGAGTCGGATTACAATTCACTCTAAACCCTTTGGAGCTATGGTCAATCTTAGGCTACTTCAGATGAATTATGTGAATTTGGAAGGGAGCTTCAAATTTCTTCCTTCTGAATTGAAGTGGTTACAATGGAAAGGTTGTCCTCTGAAATCTCTTCCTTCTGTTCTTTTCCTTCAAGGACTTGCTGGCCTTGATCTTTCAAGGAGCAAAGTGGAAAGATTGTGCAGTGGTAACAAGAATAAGGTGGCTGAGAAATTGATGTTCCTGAATCTAAGTGGCTGCAGTTCTCTAACTGCTATTCCTGATTTATCAGGGAATCATGCCTTGGAAAAGCTTATTCTTAAGAATTGTGTTGGACTAATCAAGCTCCATGATTCGATTGGGAATTTGAATACATTAGTCTACTTGAACTTGGAAGGGTGTGTAAACCTGGTTGAACTTCCAAGTGATGTCTCCGGCCTGAGAAAACTTGAGAACCTAAACCTTTATGGTTGCTCACAATTGAAAAGACTGCCAAAAAACATCGGAAGCATGGTATCACTAAAAGAATTTGTCCTTGATGAAACTTCTATTGAAAGTCTACCCGAAACTATATTCCATCTCACAAAACTTGAAAAGCTCAGCTTGAACCGGTGCAGAGCCCTGAAAGGGCTACCTGAGGAGATTAGTAAGCTGTGTTCTTTGAAGGAGATCTCCCTTAATGAATCCGGTTTGGAAAAGCTACCTGATTCCATTGGCTCTTTGGCAAACCTTGAGATACTAAGTTTGTTCTGGTGTAGTTCACTGACCACTATTCCTAACTCCCTTGGTAACCTCAATAACTTAATGGAATTTTTTACTTACGGTACTCCAATTGAAGAACTGCCATTGAGTTTTGGTTTATTATCAAACTTGAAGGAATTATCAGTAGGACATGGTCATTTTCTGCAAGCACTACCAGATTCCATTGGAGGACTAAAATCACTGGTTGTGTTAAAGATAGATGAGACATCAATCACAGGTCTTCCACAAGAGATTAGTGCCTTGAAAACACTTGAGAAGCTTGAGCTAAGGAAATGTAAATTTCTTAGATCATTACCAGAATCAATTGGAAGCGTGAGGGCACTAACTTCTATAATCATTACTGCAGCAGATATCACCGAGTTGCCTGAATCCATAGGGATGCTGGAAAATCTTACCATGTTACAGTTGAACGGGTGCAAACAGTTCCGCAAGCTCCCAACATCAATAGGACAGTTAAAGTCCTTGAACCGATTGCAGATGAGGGAAGCAGCAGTGACAGAACTACCCGAAAGCTTTGGAATGCTTTCTAGTTTGATGGTTTTGAGCATGGCGAAGAAGCCTCAAAATGGGAAACATATAGAAGAAAACTTTATACTTCCAGCTTCTTTCTCAAATCTGTCCCTGCTGTATGAACTGGATGCTCGTGCTTGTAATATATCTGGTGAAATTTCTGATGATTTCGAGAAGTTATCATCACTTGAAACTTTGAATCTCAGCCGTAATAGTTTCTGCCGCCTTCCAGCCAGCCTGAGTGGCATGTCCGTGCTCCAAAAACTTTTATTGCCTCATTGTAAAAAGCTCAGGTCTCTGCCTCCGCTTCCTTCAAGTTTGAAAACGGTGGACATTGCAAACTGTACTGCATTAGAACGTATCTCTGATGTTTCCAACCTGGAAAACTTGACTGAGCTGAACCTTACAAATTGTGCGAAAGTTGAGGATATTCCAGGTCTTGAATGCTTGAATTCCTTGACGAGTCTCTTTATGACTGGTTGCAACGCTTGCTCGTCAGTTGTTAAGAAAAGACTCGCAAAAAAGAGCCACTTGAGGAGAATTCGGAGTCTTAGCATGCCTGGAAGCAAGATACCAGACTGGTTTTCTAAAGATGTGATTACATTCTCAGGACGGAAAAACCGCGTTCTTAAAGAATTGATTATAGGTGTTGTAGTTTCTCTCAACCATCAAATACCAGATGACCTACGAGAAGAACTCCCTGCTGTGGTAGATATTCAAGCAAAGATCCTCATACTGAATTCTCCTACCTTCACATCAGCGTTGGCCTTATCTGGAGTCCCCAATACAAATGAAGATCAATTTTACTTGTGCAAGTATCGAAATAATCAACCTTTGGTATTCCAATTGAAGGATGGTTATACGATACATGTAGAAAGGAGAGAGCCACCTTGTGTGAAAGGGGTGGAGCTGAAGAAGTGGGGGATTCATTTGGTGTATGAAGGTGATGATGATTACGAGGGGGACGAAGAGTCACTGAAAGAAAGCCATCAATCCCTTTCAGAAAAACTGGCCAAGTTCTTCGGCTCTTTTGATGATGAAGAAGCTGACTTCACCTCCGGTATTGAACAAGATGATTGCATTTCTGCAACTAGAGATGGTGAAGATGAAGGATTGCCAATGGCACAAGAAATTAGAGAAAGTGAACAAAGAATATGGTTACATCATGATCGCCATTACTTCGTTTCTTTCTTCCTAGTGCTTTCTCTCTCGTCTTTCTATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1214

Amino Acids

135.78

Weight (kDa)

6.31

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 147 5.1e-15 NB-ARC domain
NACHT PF05729 3 - 141 2.9e-06 NACHT domain
WHD_ROQ1 PF23282 216 - 285 2.8e-13 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 472 - 585 2.5e-10 Leucine-rich repeat region
LRR_14 PF23598 534 - 651 3.2e-13 Leucine-rich repeat region
LRR_14 PF23598 656 - 725 2.5e-07 Leucine-rich repeat region
LRR_14 PF23598 699 - 772 3.5e-09 Leucine-rich repeat region
LRR_14 PF23598 750 - 821 2.8e-11 Leucine-rich repeat region
LRR_14 PF23598 847 - 1001 1.8e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AasI GACNNNNNNGTC 1 cut(s) 54
AccI GTMKAC 4 cut(s) 892, 952, 1524, 1702
AccII CGCG 2 cut(s) 638, 3039
AciI CCGC 5 cut(s) 102, 2332, 2638, 2720, 3037
AclWI GGATC 5 cut(s) 474, 869, 882, 1017, 3136
AcoI YGGCCR 2 cut(s) 596, 3426
AcuI CTGAAG 4 cut(s) 261, 593, 1169, 3347
AdeI CACNNNGTG 1 cut(s) 3308
AfaI GTAC 2 cut(s) 1969, 2761
AfiI CCNNNNNNNGG 4 cut(s) 1770, 2471, 3121, 3265
AflII CTTAAG 1 cut(s) 1463
AflIII ACRYGT 1 cut(s) 3283
AgeI ACCGGT 1 cut(s) 1752
AhdI GACNNNNNGTC 1 cut(s) 3385
AjnI CCWGG 7 cut(s) 157, 402, 877, 1551, 2793, 2848, 2974
AjuI GAANNNNNNNTTGG 2 cut(s) 1430, 1462
Alw21I GWGCWC 1 cut(s) 2673
Alw26I GTCTC 7 cut(s) 103, 179, 492, 1579, 2102, 2715, 2885
AlwI GGATC 5 cut(s) 474, 869, 882, 1017, 3136
AoxI GGCC 5 cut(s) 596, 1309, 1579, 3180, 3426
ApeKI GCWGC 3 cut(s) 1401, 2249, 2393
AseI ATTAAT 1 cut(s) 918
AsiGI ACCGGT 1 cut(s) 1752
Asp700I GAANNNNTTC 1 cut(s) 2428
AspLEI GCGC 2 cut(s) 409, 640
AspS9I GGNCC 2 cut(s) 973, 1001
AsuHPI GGTGA 6 cut(s) 761, 2251, 2579, 3371, 3460, 3527
AvaII GGWCC 2 cut(s) 973, 1001
AxyI CCTNAGG 1 cut(s) 1779
BaeGI GKGCMC 1 cut(s) 2227
BalI TGGCCA 1 cut(s) 3428
BamHI GGATCC 1 cut(s) 874
BanII GRGCYC 1 cut(s) 1765
BauI CACGAG 2 cut(s) 328, 2547
BbsI GAAGAC 4 cut(s) 807, 850, 916, 2117
Bbv12I GWGCWC 1 cut(s) 2673
BbvI GCAGC 3 cut(s) 1388, 2261, 2405
BccI CCATC 8 cut(s) 59, 740, 1728, 2434, 3090, 3263, 3411, 3506
BceAI ACGGC 2 cut(s) 48, 2607
BciT130I CCWGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
BcoDI GTCTC 7 cut(s) 103, 179, 492, 1579, 2102, 2715, 2885
BfaI CTAG 6 cut(s) 641, 968, 977, 2433, 3507, 3611
BfmI CTRYAG 2 cut(s) 1402, 2247
BfoI RGCGCY 1 cut(s) 410
BfrI CTTAAG 1 cut(s) 1463
BglI GCCNNNNNGGC 1 cut(s) 2658
BglII AGATCT 1 cut(s) 1812
BisI GCNGC 4 cut(s) 1402, 2250, 2394, 2638
BlpI GCTNAGC 1 cut(s) 1742
BlsI GCNGC 4 cut(s) 1403, 2251, 2395, 2639
Bme1390I CCNGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
Bme18I GGWCC 2 cut(s) 973, 1001
BmeRI GACNNNNNGTC 1 cut(s) 3385
BmgT120I GGNCC 2 cut(s) 973, 1001
BmiI GGNNCC 1 cut(s) 876
BmrFI CCNGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 6 cut(s) 156, 559, 703, 807, 2274, 2533
BmuI ACTGGG 1 cut(s) 345
BpiI GAAGAC 4 cut(s) 807, 850, 916, 2117
BplI GAGNNNNNCTC 2 cut(s) 3096, 3128
BpmI CTGGAG 1 cut(s) 3210
Bpu10I CCTNAGC 2 cut(s) 2171, 2705
Bpu1102I GCTNAGC 1 cut(s) 1742
BpuEI CTTGAG 5 cut(s) 1613, 1895, 2177, 2186, 2968
BsaI GGTCTC 1 cut(s) 2715
BsaJI CCNNGG 5 cut(s) 30, 157, 402, 1446, 1927
BsaWI WCCGGW 3 cut(s) 1752, 1829, 3473
BsaXI ACNNNNNCTCC 4 cut(s) 1152, 1182, 3455, 3485
Bsc4I CCNNNNNNNGG 4 cut(s) 1770, 2471, 3121, 3265
Bse118I RCCGGY 2 cut(s) 1016, 1752
Bse1I ACTGG 7 cut(s) 193, 351, 2091, 2544, 2896, 2999, 3429
Bse21I CCTNAGG 1 cut(s) 1779
Bse3DI GCAATG 1 cut(s) 2748
BseBI CCWGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
BseDI CCNNGG 5 cut(s) 30, 157, 402, 1446, 1927
BseGI GGATG 7 cut(s) 250, 619, 822, 937, 2289, 2548, 3274
BseLI CCNNNNNNNGG 4 cut(s) 1770, 2471, 3121, 3265
BseMI GCAATG 1 cut(s) 2748
BseNI ACTGG 7 cut(s) 193, 351, 2091, 2544, 2896, 2999, 3429
BseRI GAGGAG 4 cut(s) 562, 745, 1796, 2965
BseSI GKGCMC 1 cut(s) 2227
BseXI GCAGC 3 cut(s) 1388, 2261, 2405
BsgI GTGCAG 3 cut(s) 560, 1366, 1777
Bsh1236I CGCG 2 cut(s) 638, 3039
BshFI GGCC 5 cut(s) 598, 1311, 1581, 3182, 3428
BshTI ACCGGT 1 cut(s) 1752
BsiHKAI GWGCWC 1 cut(s) 2673
BsiSI CCGG 5 cut(s) 1017, 1578, 1753, 1830, 3474
BslFI GGGAC 6 cut(s) 385, 848, 955, 2509, 3179, 3392
BslI CCNNNNNNNGG 4 cut(s) 1770, 2471, 3121, 3265
BsmAI GTCTC 7 cut(s) 103, 179, 492, 1579, 2102, 2715, 2885
BsmFI GGGAC 6 cut(s) 385, 848, 955, 2509, 3179, 3392
BsmI GAATGC 2 cut(s) 2430, 2864
BsnI GGCC 5 cut(s) 598, 1311, 1581, 3182, 3428
Bso31I GGTCTC 1 cut(s) 2715
Bsp1286I GDGCHC 3 cut(s) 1765, 2227, 2673
Bsp1720I GCTNAGC 1 cut(s) 1742
BspACI CCGC 5 cut(s) 102, 2332, 2638, 2720, 3037
BspANI GGCC 5 cut(s) 598, 1311, 1581, 3182, 3428
BspFNI CGCG 2 cut(s) 638, 3039
BspHI TCATGA 1 cut(s) 3580
BspLI GGNNCC 1 cut(s) 876
BspMAI CTGCAG 2 cut(s) 1406, 2251
BspPI GGATC 5 cut(s) 474, 869, 882, 1017, 3136
BspTI CTTAAG 1 cut(s) 1463
BspTNI GGTCTC 1 cut(s) 2715
BsrDI GCAATG 1 cut(s) 2748
BsrFI RCCGGY 2 cut(s) 1016, 1752
BsrI ACTGG 7 cut(s) 193, 351, 2091, 2544, 2896, 2999, 3429
BssAI RCCGGY 2 cut(s) 1016, 1752
BssECI CCNNGG 5 cut(s) 30, 157, 402, 1446, 1927
BssNAI GTATAC 1 cut(s) 953
BssSI CACGAG 2 cut(s) 328, 2547
BssT1I CCWWGG 2 cut(s) 1446, 1927
Bst1107I GTATAC 1 cut(s) 953
Bst2BI CACGAG 2 cut(s) 328, 2547
Bst2UI CCWGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
Bst6I CTCTTC 4 cut(s) 132, 433, 1281, 3378
BstAFI CTTAAG 1 cut(s) 1463
BstAPI GCANNNNNTGC 1 cut(s) 2904
BstC8I GCNNGC 9 cut(s) 679, 683, 884, 1309, 2052, 2336, 2650, 2905, 2972
BstDSI CCRYGG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 1931
BstF5I GGATG 7 cut(s) 250, 619, 822, 937, 2289, 2548, 3274
BstFNI CGCG 2 cut(s) 638, 3039
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 409, 640
BstMAI GTCTC 7 cut(s) 103, 179, 492, 1579, 2102, 2715, 2885
BstMWI GCNNNNNNNGC 4 cut(s) 206, 646, 2658, 2904
BstNI CCWGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
BstNSI RCATGY 5 cut(s) 681, 886, 2665, 2974, 3287
BstPI GGTNACC 1 cut(s) 1931
BstSCI CCNGG 7 cut(s) 157, 402, 877, 1551, 2793, 2848, 2974
BstSFI CTRYAG 2 cut(s) 1402, 2247
BstSLI GKGCMC 1 cut(s) 2227
BstUI CGCG 2 cut(s) 638, 3039
BstV1I GCAGC 3 cut(s) 1388, 2261, 2405
BstV2I GAAGAC 4 cut(s) 807, 850, 916, 2117
BstX2I RGATCY 5 cut(s) 466, 874, 1009, 1812, 3141
BstYI RGATCY 5 cut(s) 466, 874, 1009, 1812, 3141
BstZ17I GTATAC 1 cut(s) 953
Bsu36I CCTNAGG 1 cut(s) 1779
BsuRI GGCC 5 cut(s) 598, 1311, 1581, 3182, 3428
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 7 cut(s) 250, 619, 822, 937, 2289, 2548, 3274
BtsI GCAGTG 3 cut(s) 771, 1354, 2403
BtsIMutI CAGTG 8 cut(s) 431, 771, 981, 1354, 1904, 2084, 2403, 3389
Cac8I GCNNGC 9 cut(s) 679, 683, 884, 1309, 2052, 2336, 2650, 2905, 2972
CciI TCATGA 1 cut(s) 3580
CfoI GCGC 2 cut(s) 409, 640
Cfr10I RCCGGY 2 cut(s) 1016, 1752
Cfr13I GGNCC 2 cut(s) 973, 1001
CseI GACGC 1 cut(s) 644
CsiI ACCWGGT 1 cut(s) 1551
Csp6I GTAC 2 cut(s) 1968, 2760
CspAI ACCGGT 1 cut(s) 1752
CviQI GTAC 2 cut(s) 1968, 2760
DraIII CACNNNGTG 1 cut(s) 3308
DrdI GACNNNNNNGTC 1 cut(s) 54
DriI GACNNNNNGTC 1 cut(s) 3385
DseDI GACNNNNNNGTC 1 cut(s) 54
EaeI YGGCCR 2 cut(s) 596, 3426
Eam1104I CTCTTC 4 cut(s) 132, 433, 1281, 3378
Eam1105I GACNNNNNGTC 1 cut(s) 3385
EarI CTCTTC 4 cut(s) 132, 433, 1281, 3378
Eco130I CCWWGG 2 cut(s) 1446, 1927
Eco24I GRGCYC 1 cut(s) 1765
Eco31I GGTCTC 1 cut(s) 2715
Eco32I GATATC 1 cut(s) 2257
Eco47I GGWCC 2 cut(s) 973, 1001
Eco57I CTGAAG 4 cut(s) 261, 593, 1169, 3347
Eco81I CCTNAGG 1 cut(s) 1779
Eco91I GGTNACC 1 cut(s) 1931
EcoO109I RGGNCCY 1 cut(s) 973
EcoO65I GGTNACC 1 cut(s) 1931
EcoRI GAATTC 3 cut(s) 2866, 2955, 3154
EcoRII CCWGG 7 cut(s) 157, 402, 877, 1551, 2793, 2848, 2974
EcoRV GATATC 1 cut(s) 2257
EcoT14I CCWWGG 2 cut(s) 1446, 1927
EcoT38I GRGCYC 1 cut(s) 1765
ErhI CCWWGG 2 cut(s) 1446, 1927
FalI AAGNNNNNCTT 8 cut(s) 647, 679, 1089, 1121, 1730, 1762, 2930, 2962
FaqI GGGAC 6 cut(s) 385, 848, 955, 2509, 3179, 3392
FblI GTMKAC 4 cut(s) 892, 952, 1524, 1702
Fnu4HI GCNGC 4 cut(s) 1402, 2250, 2394, 2638
FokI GGATG 7 cut(s) 257, 626, 829, 944, 2296, 2555, 3281
FriOI GRGCYC 1 cut(s) 1765
Fsp4HI GCNGC 4 cut(s) 1402, 2250, 2394, 2638
FspBI CTAG 6 cut(s) 641, 968, 977, 2433, 3507, 3611
GlaI GCGC 2 cut(s) 408, 639
GluI GCNGC 4 cut(s) 1402, 2250, 2394, 2638
GsuI CTGGAG 1 cut(s) 3210
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 5 cut(s) 598, 1311, 1581, 3182, 3428
HapII CCGG 5 cut(s) 1017, 1578, 1753, 1830, 3474
HgaI GACGC 1 cut(s) 644
HhaI GCGC 2 cut(s) 409, 640
Hin6I GCGC 2 cut(s) 407, 638
HinP1I GCGC 2 cut(s) 407, 638
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 3 cut(s) 1454, 2162, 2416
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 5 cut(s) 1017, 1578, 1753, 1830, 3474
HphI GGTGA 6 cut(s) 761, 2251, 2579, 3371, 3460, 3527
Hpy166II GTNNAC 9 cut(s) 262, 893, 953, 1525, 1549, 1703, 1904, 2746, 3560
Hpy8I GTNNAC 9 cut(s) 262, 893, 953, 1525, 1549, 1703, 1904, 2746, 3560
HpyCH4IV ACGT 1 cut(s) 2773
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 646, 2658, 2904
HpySE526I ACGT 1 cut(s) 2773
HspAI GCGC 2 cut(s) 407, 638
KspAI GTTAAC 1 cut(s) 262
LmnI GCTCC 9 cut(s) 732, 901, 1160, 1212, 1326, 1494, 2343, 2676, 3322
Lsp1109I GCAGC 3 cut(s) 1388, 2261, 2405
LweI GCATC 6 cut(s) 156, 559, 703, 807, 2274, 2533
MabI ACCWGGT 1 cut(s) 1551
MaeI CTAG 6 cut(s) 641, 968, 977, 2433, 3507, 3611
MaeII ACGT 1 cut(s) 2773
MaeIII GTNAC 9 cut(s) 172, 422, 1245, 1352, 1931, 2304, 2398, 3387, 3573
MfeI CAATTG 6 cut(s) 717, 759, 1622, 1974, 2208, 3260
MflI RGATCY 5 cut(s) 466, 874, 1009, 1812, 3141
MhlI GDGCHC 3 cut(s) 1765, 2227, 2673
MlsI TGGCCA 1 cut(s) 3428
MluNI TGGCCA 1 cut(s) 3428
MlyI GAGTC 7 cut(s) 407, 1138, 2887, 2922, 2971, 3201, 3395
MmeI TCCRAC 3 cut(s) 1112, 1456, 2814
Mox20I TGGCCA 1 cut(s) 3428
MroXI GAANNNNTTC 1 cut(s) 2428
MscI TGGCCA 1 cut(s) 3428
MslI CAYNNNNRTG 2 cut(s) 2282, 2666
Msp20I TGGCCA 1 cut(s) 3428
MspCI CTTAAG 1 cut(s) 1463
MspI CCGG 5 cut(s) 1017, 1578, 1753, 1830, 3474
MspR9I CCNGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
MunI CAATTG 6 cut(s) 717, 759, 1622, 1974, 2208, 3260
Mva1269I GAATGC 2 cut(s) 2430, 2864
MvaI CCWGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
MvnI CGCG 2 cut(s) 638, 3039
MwoI GCNNNNNNNGC 4 cut(s) 206, 646, 2658, 2904
NlaIV GGNNCC 1 cut(s) 876
NmuCI GTSAC 3 cut(s) 172, 2398, 3387
NspI RCATGY 5 cut(s) 681, 886, 2665, 2974, 3287
PaeI GCATGC 3 cut(s) 681, 886, 2974
PagI TCATGA 1 cut(s) 3580
PciI ACATGT 1 cut(s) 3283
PcsI WCGNNNNNNNCGW 3 cut(s) 642, 858, 3378
PctI GAATGC 2 cut(s) 2430, 2864
PdmI GAANNNNTTC 1 cut(s) 2428
PflFI GACNNNGTC 1 cut(s) 2037
PinAI ACCGGT 1 cut(s) 1752
PkrI GCNGC 4 cut(s) 1403, 2251, 2395, 2639
PleI GAGTC 7 cut(s) 406, 1137, 2886, 2922, 2970, 3200, 3394
PpsI GAGTC 7 cut(s) 406, 1137, 2886, 2922, 2970, 3200, 3394
PpuMI RGGWCCY 1 cut(s) 973
PscI ACATGT 1 cut(s) 3283
PshBI ATTAAT 1 cut(s) 918
PsiI TTATAA 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 973
Psp6I CCWGG 7 cut(s) 157, 402, 877, 1551, 2793, 2848, 2974
PspEI GGTNACC 1 cut(s) 1931
PspGI CCWGG 7 cut(s) 157, 402, 877, 1551, 2793, 2848, 2974
PspN4I GGNNCC 1 cut(s) 876
PspPI GGNCC 2 cut(s) 973, 1001
PspPPI RGGWCCY 1 cut(s) 973
PsrI GAACNNNNNNTAC 2 cut(s) 1783, 1815
PstI CTGCAG 2 cut(s) 1406, 2251
PsuI RGATCY 5 cut(s) 466, 874, 1009, 1812, 3141
PsyI GACNNNGTC 1 cut(s) 2037
RsaI GTAC 2 cut(s) 1969, 2761
RsaNI GTAC 2 cut(s) 1968, 2760
RseI CAYNNNNRTG 2 cut(s) 2282, 2666
SatI GCNGC 4 cut(s) 1402, 2250, 2394, 2638
Sau96I GGNCC 2 cut(s) 973, 1001
SchI GAGTC 7 cut(s) 407, 1138, 2887, 2922, 2971, 3201, 3395
ScrFI CCNGG 7 cut(s) 159, 404, 879, 1553, 2795, 2850, 2976
SduI GDGCHC 3 cut(s) 1765, 2227, 2673
SexAI ACCWGGT 1 cut(s) 1551
SfaNI GCATC 6 cut(s) 156, 559, 703, 807, 2274, 2533
SfcI CTRYAG 2 cut(s) 1402, 2247
SinI GGWCC 2 cut(s) 973, 1001
SmiMI CAYNNNNRTG 2 cut(s) 2282, 2666
SmlI CTYRAG 6 cut(s) 1463, 1592, 1874, 2156, 2165, 2947
SmoI CTYRAG 6 cut(s) 1463, 1592, 1874, 2156, 2165, 2947
SphI GCATGC 3 cut(s) 681, 886, 2974
SsiI CCGC 5 cut(s) 102, 2332, 2638, 2720, 3037
SspMI CTAG 6 cut(s) 641, 968, 977, 2433, 3507, 3611
StyD4I CCNGG 7 cut(s) 157, 402, 877, 1551, 2793, 2848, 2974
StyI CCWWGG 2 cut(s) 1446, 1927
TaiI ACGT 1 cut(s) 2776
TaqI TCGA 3 cut(s) 1499, 2586, 3235
TatI WGTACW 1 cut(s) 2759
TauI GCSGC 1 cut(s) 2640
TscAI CASTG 8 cut(s) 438, 778, 988, 1354, 1911, 2091, 2403, 3396
TseFI GTSAC 3 cut(s) 172, 2398, 3387
TseI GCWGC 3 cut(s) 1401, 2249, 2393
Tsp45I GTSAC 3 cut(s) 172, 2398, 3387
TspGWI ACGGA 2 cut(s) 2656, 3043
TspRI CASTG 8 cut(s) 438, 778, 988, 1354, 1911, 2091, 2403, 3396
Tth111I GACNNNGTC 1 cut(s) 2037
Vha464I CTTAAG 1 cut(s) 1463
VpaK11BI GGWCC 2 cut(s) 973, 1001
VspI ATTAAT 1 cut(s) 918
XceI RCATGY 5 cut(s) 681, 886, 2665, 2974, 3287
XcmI CCANNNNNNNNNTGG 4 cut(s) 1499, 1861, 2284, 3266
XmiI GTMKAC 4 cut(s) 892, 952, 1524, 1702
XmnI GAANNNNTTC 1 cut(s) 2428
XspI CTAG 6 cut(s) 641, 968, 977, 2433, 3507, 3611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.