RLG00000005775

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001217
Physical Location & Seq
Forward (+)
1644164 .. 1645402
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005775

Sequence Viewer

Length: 1002 bp
ATGGGAAAGAAGCCTCAAAATGGGAGACATGCAGAAGAGAAGTTTATACTTCCAGCTTCCTTCTCAAATCTGTCCCTGCTGTACGAACTGGATGCCCGTGCTTGTAATATATCTGGTAAAATTGCTGATGATTTCGAGAAGTTGTCATCGCTAGAAACTTTGAATCTGGGCCATAATAGTTTCTGCCGCCTTCCAGCCAGCCTGAGTGGTCTGTCCACTCTCGGAAAACTTTCATTGCCTCACTGTAAGAAGCTCAAATCTTTGCCACCGCTACCCTCAAGTTTGAAAGAGGTGGATGTTGCAAACTGTACTGCATTAGAAAGTATATCTGATATATCAAACCTAGAGAACTTGACAGATTTCAACCTTACAAGCTGTGAGAAAGTGATGGATATTCCCGGCCTTGAATGCTTGGATTCCTTGGTAAGGTTGTATATGAGTGGCTGCAATGCTTGCACATCAGCTGTTAAGAGAAGACTTGCGAAAAAGAGCTACCTGAGGAAAATACGCAATCTTAGCATGCCTGGAAGCAAGATACCCGACTGGTTTTCTCAAGAAATGGTTACATTCTCAAAACGAGAAAACCGCCCCCTCAAAAGTGTAATTCTCTGTGTTGTAGTCTCGCTCAACCATCAAACACCAGATGATACAAGAGAAGAATTTCCTGCTGTGGTAGATATTCAAGCACAGATCCTCATACTGGATTCTCCTACTTTCACTACAACATTGGTCTTATCGGGAGTACCAAATACAAATGAAGATCAACTTCACTTGTGCCGGTATCCAACTGATCATCCTTTGGTATCCCAATTGAAAGATGGTTATAAAATACACGTAATGAGGAGAGAGCCGCCATATATGAAAGGGGTGGAACTGAAGAAGTGGGGGCTTTATTTGATTTACGAAGGTGATGATGACTATGAAGGAGATGAAGAATCATTAAATGAAAGCCAGCAATCCCTTTCAGAACAACTGGCAAATTTCTTCAGCTCTTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

334

Amino Acids

37.31

Weight (kDa)

5.62

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 30 - 186 2.2e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 825
AciI CCGC 4 cut(s) 187, 269, 586, 851
AclWI GGATC 1 cut(s) 685
AcsI RAATTY 2 cut(s) 659, 979
AcuI CTGAAG 2 cut(s) 896, 970
AfaI GTAC 3 cut(s) 83, 310, 744
AfiI CCNNNNNNNGG 3 cut(s) 20, 426, 700
AflIII ACRYGT 1 cut(s) 832
AgsI TTSAA 7 cut(s) 163, 286, 364, 407, 683, 814, 998
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 6 cut(s) 56, 253, 375, 464, 492, 990
AluI AGCT 6 cut(s) 56, 253, 375, 464, 492, 990
Alw26I GTCTC 2 cut(s) 19, 625
AlwI GGATC 1 cut(s) 685
AoxI GGCC 2 cut(s) 169, 400
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 2 cut(s) 659, 979
Asp700I GAANNNNTTC 2 cut(s) 229, 660
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 920
AxyI CCTNAGG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 431
BccI CCATC 3 cut(s) 382, 639, 812
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 1 cut(s) 525
BciVI GTATCC 2 cut(s) 792, 814
BclI TGATCA 1 cut(s) 790
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 19, 625
BfaI CTAG 2 cut(s) 152, 344
BfuI GTATCC 2 cut(s) 792, 814
BisI GCNGC 3 cut(s) 187, 445, 851
BlsI GCNGC 3 cut(s) 188, 446, 852
Bme1390I CCNGG 2 cut(s) 399, 525
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 399, 525
BmsI GCATC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 262, 537
BpuMI CCSGG 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 835
BsaJI CCNNGG 1 cut(s) 420
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 426, 700
Bse118I RCCGGY 1 cut(s) 777
Bse1I ACTGG 4 cut(s) 93, 548, 705, 978
Bse21I CCTNAGG 1 cut(s) 497
Bse3DI GCAATG 2 cut(s) 233, 454
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 3 cut(s) 97, 301, 793
BseLI CCNNNNNNNGG 3 cut(s) 20, 426, 700
BseMI GCAATG 2 cut(s) 233, 454
BseMII CTCAG 2 cut(s) 194, 488
BseNI ACTGG 4 cut(s) 93, 548, 705, 978
BseRI GAGGAG 1 cut(s) 856
BseXI GCAGC 1 cut(s) 431
BshFI GGCC 2 cut(s) 171, 402
BsiSI CCGG 2 cut(s) 399, 778
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 3 cut(s) 20, 426, 700
BsmAI GTCTC 2 cut(s) 19, 625
BsmFI GGGAC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 2 cut(s) 171, 402
Bsp143I GATC 3 cut(s) 690, 760, 790
BspACI CCGC 4 cut(s) 187, 269, 586, 851
BspANI GGCC 2 cut(s) 171, 402
BspCNI CTCAG 2 cut(s) 195, 489
BspPI GGATC 1 cut(s) 685
BsrDI GCAATG 2 cut(s) 233, 454
BsrFI RCCGGY 1 cut(s) 777
BsrI ACTGG 4 cut(s) 93, 548, 705, 978
BssAI RCCGGY 1 cut(s) 777
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 3 cut(s) 690, 760, 790
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 2 cut(s) 245, 308
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 453
BstBAI YACGTR 1 cut(s) 835
BstC8I GCNNGC 4 cut(s) 199, 454, 521, 953
BstDEI CTNAG 3 cut(s) 203, 497, 515
BstENI CCTNNNNNAGG 1 cut(s) 424
BstF5I GGATG 3 cut(s) 97, 301, 793
BstKTI GATC 3 cut(s) 693, 763, 793
BstMAI GTCTC 2 cut(s) 19, 625
BstMBI GATC 3 cut(s) 690, 760, 790
BstMWI GCNNNNNNNGC 3 cut(s) 408, 453, 516
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 2 cut(s) 32, 523
BstSCI CCNGG 2 cut(s) 397, 523
BstV1I GCAGC 1 cut(s) 431
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 690
BstYI RGATCY 1 cut(s) 690
Bsu36I CCTNAGG 1 cut(s) 497
BsuI GTATCC 2 cut(s) 792, 814
BsuRI GGCC 2 cut(s) 171, 402
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 3 cut(s) 97, 301, 793
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 4 cut(s) 199, 454, 521, 953
Cfr10I RCCGGY 1 cut(s) 777
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 82, 309, 743
CviAII CATG 2 cut(s) 29, 520
CviQI GTAC 3 cut(s) 82, 309, 743
DdeI CTNAG 3 cut(s) 203, 497, 515
DpnI GATC 3 cut(s) 692, 762, 792
DpnII GATC 3 cut(s) 690, 760, 790
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 420
Eco57I CTGAAG 2 cut(s) 896, 970
Eco81I CCTNAGG 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 2 cut(s) 32, 523
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 58
FatI CATG 2 cut(s) 28, 519
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 3 cut(s) 187, 445, 851
FokI GGATG 3 cut(s) 104, 308, 780
Fsp4HI GCNGC 3 cut(s) 187, 445, 851
FspBI CTAG 2 cut(s) 152, 344
GluI GCNGC 3 cut(s) 187, 445, 851
HaeIII GGCC 2 cut(s) 171, 402
HapII CCGG 2 cut(s) 399, 778
Hin1II CATG 2 cut(s) 32, 523
HinfI GANTC 4 cut(s) 163, 416, 704, 935
HpaII CCGG 2 cut(s) 399, 778
HphI GGTGA 1 cut(s) 920
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 3 cut(s) 224, 331, 967
Hpy188III TCNNGA 3 cut(s) 136, 554, 738
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 4 cut(s) 70, 200, 899, 917
HpyCH4III ACNGT 2 cut(s) 245, 308
HpyCH4IV ACGT 1 cut(s) 834
HpyCH4V TGCA 5 cut(s) 32, 302, 314, 447, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 408, 453, 516
HpyF3I CTNAG 3 cut(s) 203, 497, 515
HpySE526I ACGT 1 cut(s) 834
Hsp92II CATG 2 cut(s) 32, 523
Ksp22I TGATCA 1 cut(s) 790
Kzo9I GATC 3 cut(s) 690, 760, 790
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 152, 344
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 1 cut(s) 562
MalI GATC 3 cut(s) 692, 762, 792
MboI GATC 3 cut(s) 690, 760, 790
MboII GAAGA 7 cut(s) 47, 486, 668, 770, 889, 944, 976
MfeI CAATTG 1 cut(s) 809
MflI RGATCY 1 cut(s) 690
MluCI AATT 5 cut(s) 120, 603, 659, 809, 979
MmeI TCCRAC 1 cut(s) 809
MnlI CCTC 8 cut(s) 24, 249, 283, 286, 492, 602, 704, 834
MroXI GAANNNNTTC 2 cut(s) 229, 660
MseI TTAA 2 cut(s) 468, 941
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 399, 778
MspR9I CCNGG 2 cut(s) 399, 525
MunI CAATTG 1 cut(s) 809
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 1 cut(s) 525
MwoI GCNNNNNNNGC 3 cut(s) 408, 453, 516
NciI CCSGG 1 cut(s) 399
NdeII GATC 3 cut(s) 690, 760, 790
NlaIII CATG 2 cut(s) 32, 523
NspI RCATGY 2 cut(s) 32, 523
PaeI GCATGC 1 cut(s) 523
PctI GAATGC 1 cut(s) 413
PdmI GAANNNNTTC 2 cut(s) 229, 660
PfeI GAWTC 4 cut(s) 163, 416, 704, 935
PkrI GCNGC 3 cut(s) 188, 446, 852
Ppu21I YACGTR 1 cut(s) 835
PsiI TTATAA 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 1 cut(s) 690
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 3 cut(s) 83, 310, 744
RsaNI GTAC 3 cut(s) 82, 309, 743
SaqAI TTAA 2 cut(s) 468, 941
SatI GCNGC 3 cut(s) 187, 445, 851
Sau3AI GATC 3 cut(s) 690, 760, 790
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 2 cut(s) 399, 525
SfaNI GCATC 1 cut(s) 82
SmlI CTYRAG 2 cut(s) 277, 552
SmoI CTYRAG 2 cut(s) 277, 552
SphI GCATGC 1 cut(s) 523
Sse9I AATT 5 cut(s) 120, 603, 659, 809, 979
SsiI CCGC 4 cut(s) 187, 269, 586, 851
SspMI CTAG 2 cut(s) 152, 344
StyD4I CCNGG 2 cut(s) 397, 523
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 2 cut(s) 245, 308
TaiI ACGT 1 cut(s) 837
TaqI TCGA 1 cut(s) 135
TasI AATT 5 cut(s) 120, 603, 659, 809, 979
TatI WGTACW 1 cut(s) 308
TauI GCSGC 2 cut(s) 189, 853
TfiI GAWTC 4 cut(s) 163, 416, 704, 935
Tru1I TTAA 2 cut(s) 468, 941
Tru9I TTAA 2 cut(s) 468, 941
TscAI CASTG 1 cut(s) 248
TseI GCWGC 1 cut(s) 444
TspDTI ATGAA 6 cut(s) 222, 771, 875, 936, 945, 960
TspRI CASTG 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 424
XapI RAATTY 2 cut(s) 659, 979
XceI RCATGY 2 cut(s) 32, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 815
XmnI GAANNNNTTC 2 cut(s) 229, 660
XspI CTAG 2 cut(s) 152, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.