Rw4G035930

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
62772155 .. 62777572
5418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035930.1

Sequence Viewer

Length: 4191 bp
ATGGCGGATGAGGACGACGACTTTTCGTCAACTCTTCCCCATGTTGGCGGTTTCCGGCTGCGCTGGGACGTATTTCTAAGCTTCAGAGGCGAAGACACCCGGGAAACGATCACCAAGAATCTCTACGAGGCGCTCCAACGACGCGGCGTTCGAGTTTTCCTAGACAATGACGGTTTGGACCGCGGGGACGACATCGGCCCGACTCTACTGGAAGCCATCGAGGACTCGGCGGCGGCCATCATCGTCCTGTCGCCGAGGTATGCCGACTCAAGATGGTGTCTCAAAGAGCTTGCTAAGATTTGCGAGGGCAGTAGGAGACTTATTCTGCCTCTGTTTTACCAAGTGGATCCCTCCGACGTTCGGCGGCAGACCGGACCGTTTGAGGAGCACTTTAGACTGCATGAGCAGATGTTTGATAGCGCCACGGTCTCTGGATGGAGGACTGCCATGACCAAAGTAGGTAATAAAGCTGGTTATCGCTTCAGCAGCTCAAGAAAAGAAGCAGAGCTAATTCCAGATGAGGAAAAAAAGAAAGAAGCAGAGTTAATTGAAAGATTGGTAAGACAGGTTATGACTGAAATAAACAAAACTCCGATGGGTCTCACTCCGTACCCGGTGGGACTTCATTCCCGAGTTGAAGAGGTGATGAAGCTGTTAGATATCGGATCCAAAACCGTTCAAGTTGTCGGAGTTCATGGCCTGGGCGGTATTGGCAAAACAACCCTTGCCAAGGCGCTTTTTAATAGACTTGTTGGTTATTTTGAGCGCCACAGTTTCATCTCAAATGTCAGAGAAATCTCAGCAGGACATGATGAGAAGGGTTTAGTAACTCTTCAAAACATACTGGTCAGTGATCTTTCCAATGGGAAGATGGCTAAAATTAATCAGACTACCGCTGGTATCGCTGCCATCAAAGTGGTTGTGAATGAGAAGCGAGTACTTGTTGTTCTGGATGATGTTGATAACATAGACCAACTAAGTGCTTTAGTTGGCAACGGACAATGGTTTTATGAAGGAAGCCGAATTATTGTTACGACAAGAGATAGAGAACTCTTATCGAATCATCGTGTCAATCATAAATTGTACGAGGTCAGGGAGTTGGACGGGTCCGATGCTCTAGAACTTTTCAGTCATCATGCACTGGGAATTAGAGAAAAACCGGCAGATACCTTTCTGAAACTATCTAAGGAGATTGTGGATCTTACTGGTGGGCTACCGTTAGCGCTTGAAGTATTTGGCTCTAGCCTCTATGATAAGAGGACAGAAAAGGTATGGATAGATGCTCTGCATAAACTGAGACAGATTCGTCCACGGGATCTTCAGGATGTCCTGATGATAAGCTACAATGCTCTAGATGACCAGGAGAAGTGCATCTTTCTAGACATTGCATGTTTATTTGTTAAAATGAAGACCAAAAGAGAAGACGCAATTGTCATATTGAAGGGTTGTGGTTTTGATGGTGAGATAGTACTTACTGTCCTCACAGCAAGATCACTCATTAAGATCACTGAAGACACTACATTATGGATGCATGATCAAGTCAGAGACATGGGAAGACAAATCGTTACACAAGAAAACATTTCACACCCTGGCATGCGTAGTAGACTGTGGGATCGCGATGAAATCATGAATGTTTTCAAGTATGATAAGGGAACACCATCTATACAAGGGATTGTTCTAGACTTTGAAATGAAAAGGATGGTGAGTGATATAGGAGGTGACAGAATTTCTTGGGTCAACTTTCGGAGAAGCCTCAATTGTACCACTGCATTGACATACCTAAAGGAAAGATACAAAGCACATCGTAAAAGCCAAGCAGAGAGAAAGGGAGAGGTTAACATTTCCTCTAAAGCTTTTGGAGCAATGGTCAATCTTAGGCTGCTTCAAATGAATAATGTGAATTTAGAAGGGAACTCAAAGTTTCTTCCTGCTGGAGTCAAGTGGTTACAATGGAAAGGTTGTCCTTTGAGATCTCTCCCTTCTGATTTCTTGCCTCCGCAACTCGCTGTCCTTGATCTTTCAGACAGCAATATCACAAGTTTGTGGGGAGGGTGCAGTATCATGGTATGCTTCAATTGTCTGACCTGCAGTGGAGACGGAAACAAGGTGGCTGAGAAATTGATGTTCTTGAATCTAAGCAACTGCATTTACCTAACAGCTATTCCTGATTTATCTGGGAATCGGGCGCTACAACAGCTTAATCTTGAGCACTGTATTTCACTGATTAATCTTCATGGCTCGATTGGGAACCTGAACACATTAGTCCACTTGAACCTTCGAGGGTGTTCAAAGCTTGTTGAACTTCCAAGTGATGTCTCCGGCCTGAAAAAGCTTGAGTACCTAATCCTATCTGGTTGCTCACAGTTCAAAAAACTGCCAAACATGGACAGCTTGGTGTCACTGAAAGAACTTCTCCTTGATGACACTGCTATACAAAGTCTTCCCCAATCTATCTTCCGGCTTACAAAACTCGAAAAGCTCAGCTTAAACCGGTGCAGTGAATTAAAAGAGCTACCTGTGGAGATTGGAAAGCTGTGTTCTTTGAAAGAAATCTCGCTTGATGGATCTGGTTTGGAAAAACTACCTAATTCCATTGGCTCTTTGGCAAACCTTGAGAAATTAAGTTTGTTCTGGTGTAAATCACTGACCACTCTTCCCAATTCCATTGGGAAGCTCAATTTCTTAGTGGAAGTTAGTACTTATGGTACTCCACTCACAGAACTGCCTGTGACCATTGGATCGTTGTCAAGCTTGAAGGACTTATCAGTTGGGCACGGTCAATTTCTGAGCTCATTGCCTGATTCAGTTGGAGAACTGCGCTCTTTAGTTGTGCTAAAGATAGAGCAGACATCAATCACAGACCTCCCACAGAAGATTGGTGAATTGAAAACACTTGAGAAACTTGAGCTGAGGAAATGTGAATCTCTTAGATCATTACCAGAGTCAATTGGAAGCATGAGGGCACTAACTTCTATAATCATAACTGCAGCAAATATCACTGAGTTGCCTGAATCCATAGGGAGGCTGGAAAATCTTACCATGTTACGGTTGAACACATGTAAACAGTTCCGCAAGCTTCCAGCATCAATAGGACAGTTAAAATCCTTGCACCGATTGCAGATGGTGGAAACTGCAGTGACAGAACTACCTGAAAGCTTCGGAATGCTTTCTAGTTTGATGGTTTTGAGCATGGGAAAGAAGCCTCAAAATGGGAGACATGCAGAAGAGAAGTTTATACTTCCAGCTTCCTTCTCAAATCTGTCCCTGCTGTACGAACTGGATGCCCGTGCTTGTAATATATCTGGTGAAATTGCTGATGATTTCGAGAAGTTGACATCGCTGGAAACTTTGAATCTGGGCCGTAATAGTTTCTGCCGCCTTCCAGCCAGCCTGAGTGGTCTGTCCACTCTCGGAAAACTTTCATTGCCTCACTGTAAGAAGCTCAAATCTTTGCCACCGCTACCCTCAAGTTTGAAAGAGGTGGATGTTGCAAACTGTACTGCATTAGAAAGTATATCTGATATATCAAACCTAGAGAACTTGACAAATTTCAACCTTACAAGCTGTGAGAAAGTGATGGATATTCCCGGCCTTGAATGCTTGGATTCTTTGGTAAGGTTGTATATGAGTGGCTGCAATGCTTGCACATCAGCTGTTAAGAGAAGACTTGCGAAAAAGAGCTACCTGAGGAAAATACGCAATCTTAGCATGCCTGGAAGCAAGATACCCGACTGGTTTTCTCAAGAAATGGTTACATTCTCAAAACGAGAAAACCGCCCCCTCAAAAGTGTAATTCTCTGTGTTGTAGTCTCGCTCAACCATCAAACACCAGACGACACAAGAGAAGAATTTCCTGCTGTGGTAGATATTCAAGCACAGATCCTCATACTGGATTCTCCTACTTTCACTACAACATTGGTCTTGTCGGGAGTACCAGATACAAATGAAGATCAATTTCACTTGTGCCGGTATCCAACTGATCATCCTTTGGTATCCCAATTGAAAGATGGTTATAAAATACACGTAATGAGGAGAGAGCCGCCACATATGAAAGGGGTGGAGCTGAAGAAGTGGGGGCTTTATTTGATTTACGAAGGTGATGATGACTATGAAGGAGATGAAGAATCATTAAATGAAAGCCAGCAATCCCTTTCAGAACAACTGGCAAATTTCTTCAGCTCTTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1396

Amino Acids

156.15

Weight (kDa)

6.44

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 22 - 171 4.2e-39 TIR domain
TIR_2 PF13676 24 - 117 1e-16 TIR domain
NB-ARC PF00931 211 - 380 2.5e-19 NB-ARC domain
ATPase_2 PF01637 211 - 410 1e-06 ATPase domain predominantly from Archaea
NACHT PF05729 228 - 379 3.3e-06 NACHT domain
WHD_ROQ1 PF23282 453 - 523 5.9e-14 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 720 - 831 2.7e-08 Leucine-rich repeat region
LRR_14 PF23598 782 - 880 6.5e-12 Leucine-rich repeat region
LRR_14 PF23598 881 - 947 1.7e-07 Leucine-rich repeat region
LRR_14 PF23598 935 - 1020 3.1e-12 Leucine-rich repeat region
LRR_14 PF23598 1021 - 1249 3.4e-15 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4014
AasI GACNNNNNNGTC 2 cut(s) 1305, 1430
Acc36I ACCTGC 1 cut(s) 2093
AccI GTMKAC 1 cut(s) 1603
AccII CGCG 3 cut(s) 144, 183, 1617
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 5 cut(s) 1725, 1900, 3547, 3848, 4168
AcuI CTGAAG 6 cut(s) 67, 466, 1304, 1530, 4085, 4159
AfeI AGCGCT 1 cut(s) 1224
AfiI CCNNNNNNNGG 7 cut(s) 44, 360, 730, 3021, 3045, 3209, 3889
AflIII ACRYGT 2 cut(s) 3056, 4021
AgeI ACCGGT 1 cut(s) 2490
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 4 cut(s) 699, 1359, 1588, 3712
Alw21I GWGCWC 3 cut(s) 390, 2211, 2792
Ama87I CYCGRG 2 cut(s) 99, 630
Aor51HI AGCGCT 1 cut(s) 1224
AoxI GGCC 6 cut(s) 196, 234, 697, 2320, 3358, 3589
ApeKI GCWGC 6 cut(s) 58, 486, 905, 1879, 2987, 3633
ApoI RAATTY 5 cut(s) 1725, 1900, 3547, 3848, 4168
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AseI ATTAAT 2 cut(s) 882, 2226
AsiGI ACCGGT 1 cut(s) 2490
Asp700I GAANNNNTTC 4 cut(s) 1634, 3166, 3418, 3849
AspLEI GCGC 8 cut(s) 63, 133, 422, 736, 768, 1225, 2188, 2820
AspS9I GGNCC 5 cut(s) 178, 197, 374, 1107, 3358
AsuC2I CCSGG 4 cut(s) 100, 101, 614, 3588
AsuHPI GGTGA 8 cut(s) 103, 655, 1472, 1714, 1730, 2891, 3317, 4109
AvaI CYCGRG 2 cut(s) 99, 630
AvaII GGWCC 3 cut(s) 178, 374, 1107
AxyI CCTNAGG 1 cut(s) 3686
BaeGI GKGCMC 2 cut(s) 2775, 2965
BamHI GGATCC 2 cut(s) 346, 665
BanII GRGCYC 1 cut(s) 2792
BbsI GAAGAC 7 cut(s) 99, 1415, 1428, 1518, 1561, 2432, 3670
Bbv12I GWGCWC 3 cut(s) 390, 2211, 2792
BbvCI CCTCAGC 1 cut(s) 2909
BbvI GCAGC 6 cut(s) 45, 498, 892, 1866, 2999, 3620
BceAI ACGGC 1 cut(s) 3345
BcgI CGANNNNNNTGC 2 cut(s) 3263, 3297
BciT130I CCWGG 4 cut(s) 701, 1361, 1590, 3714
BciVI GTATCC 2 cut(s) 3981, 4003
BclI TGATCA 2 cut(s) 1534, 3979
BcnI CCSGG 4 cut(s) 100, 101, 614, 3588
BfaI CTAG 8 cut(s) 161, 1118, 1242, 1352, 1379, 1679, 3171, 3533
BfmI CTRYAG 3 cut(s) 2086, 2985, 3132
BfoI RGCGCY 6 cut(s) 134, 423, 737, 769, 1226, 2189
BfuAI ACCTGC 1 cut(s) 2093
BfuI GTATCC 2 cut(s) 3981, 4003
BglII AGATCT 1 cut(s) 1970
BlpI GCTNAGC 1 cut(s) 2480
BmcAI AGTACT 3 cut(s) 939, 1470, 2698
Bme1390I CCNGG 8 cut(s) 100, 101, 614, 701, 1361, 1590, 3588, 3714
Bme18I GGWCC 3 cut(s) 178, 374, 1107
BmeRI GACNNNNNGTC 1 cut(s) 25
BmeT110I CYCGRG 2 cut(s) 99, 630
BmgT120I GGNCC 5 cut(s) 178, 197, 374, 1107, 3358
BmiI GGNNCC 4 cut(s) 348, 667, 1108, 2249
BmrFI CCNGG 8 cut(s) 100, 101, 614, 701, 1361, 1590, 3588, 3714
BmrI ACTGGG 1 cut(s) 1151
BmsI GCATC 6 cut(s) 1102, 1270, 1380, 1518, 3092, 3271
BmuI ACTGGG 1 cut(s) 1151
BpiI GAAGAC 7 cut(s) 99, 1415, 1428, 1518, 1561, 2432, 3670
BpmI CTGGAG 1 cut(s) 1953
Bpu10I CCTNAGC 1 cut(s) 2909
Bpu1102I GCTNAGC 1 cut(s) 2480
BpuEI CTTGAG 9 cut(s) 253, 475, 2225, 2354, 2633, 2915, 2924, 3451, 3726
BpuMI CCSGG 4 cut(s) 100, 101, 614, 3588
BsaAI YACGTR 1 cut(s) 4024
BsaI GGTCTC 2 cut(s) 433, 605
BsaJI CCNNGG 8 cut(s) 99, 181, 254, 423, 700, 729, 1310, 1588
BsaWI WCCGGW 2 cut(s) 371, 2490
BsaXI ACNNNNNCTCC 2 cut(s) 1851, 1881
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 360, 730, 3021, 3045, 3209, 3889
Bse118I RCCGGY 3 cut(s) 1159, 2490, 3966
Bse1I ACTGG 8 cut(s) 213, 849, 1146, 1210, 3282, 3737, 3894, 4167
Bse21I CCTNAGG 1 cut(s) 3686
Bse3DI GCAATG 5 cut(s) 1383, 1869, 2792, 3422, 3643
BseBI CCWGG 4 cut(s) 701, 1361, 1590, 3714
BseDI CCNNGG 8 cut(s) 99, 181, 254, 423, 700, 729, 1310, 1588
BseGI GGATG 9 cut(s) 13, 440, 958, 1330, 1533, 1704, 3286, 3490, 3982
BseLI CCNNNNNNNGG 7 cut(s) 44, 360, 730, 3021, 3045, 3209, 3889
BseMI GCAATG 5 cut(s) 1383, 1869, 2792, 3422, 3643
BseMII CTCAG 9 cut(s) 813, 1286, 2103, 2494, 2777, 2900, 2991, 3383, 3677
BseNI ACTGG 8 cut(s) 213, 849, 1146, 1210, 3282, 3737, 3894, 4167
BseRI GAGGAG 2 cut(s) 398, 4045
BseSI GKGCMC 2 cut(s) 2775, 2965
BseXI GCAGC 6 cut(s) 45, 498, 892, 1866, 2999, 3620
BseYI CCCAGC 1 cut(s) 63
BsgI GTGCAG 2 cut(s) 2074, 2515
Bsh1236I CGCG 3 cut(s) 144, 183, 1617
BshFI GGCC 6 cut(s) 198, 236, 699, 2322, 3360, 3591
BshTI ACCGGT 1 cut(s) 2490
BsiHKAI GWGCWC 3 cut(s) 390, 2211, 2792
BsiHKCI CYCGRG 2 cut(s) 99, 630
BslFI GGGAC 4 cut(s) 80, 200, 633, 3247
BslI CCNNNNNNNGG 7 cut(s) 44, 360, 730, 3021, 3045, 3209, 3889
BsmBI CGTCTC 1 cut(s) 2088
BsmFI GGGAC 4 cut(s) 80, 200, 633, 3247
BsmI GAATGC 2 cut(s) 3168, 3602
BsnI GGCC 6 cut(s) 198, 236, 699, 2322, 3360, 3591
Bso31I GGTCTC 2 cut(s) 433, 605
BsoBI CYCGRG 2 cut(s) 99, 630
Bsp1286I GDGCHC 5 cut(s) 390, 2211, 2775, 2792, 2965
Bsp1720I GCTNAGC 1 cut(s) 2480
Bsp68I TCGCGA 1 cut(s) 1617
BspANI GGCC 6 cut(s) 198, 236, 699, 2322, 3360, 3591
BspCNI CTCAG 9 cut(s) 812, 1287, 2104, 2493, 2778, 2901, 2992, 3384, 3678
BspFNI CGCG 3 cut(s) 144, 183, 1617
BspHI TCATGA 1 cut(s) 1626
BspLI GGNNCC 4 cut(s) 348, 667, 1108, 2249
BspMAI CTGCAG 3 cut(s) 2090, 2989, 3136
BspMI ACCTGC 1 cut(s) 2093
BspTNI GGTCTC 2 cut(s) 433, 605
BsrDI GCAATG 5 cut(s) 1383, 1869, 2792, 3422, 3643
BsrFI RCCGGY 3 cut(s) 1159, 2490, 3966
BsrI ACTGG 8 cut(s) 213, 849, 1146, 1210, 3282, 3737, 3894, 4167
BssAI RCCGGY 3 cut(s) 1159, 2490, 3966
BssECI CCNNGG 8 cut(s) 99, 181, 254, 423, 700, 729, 1310, 1588
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 4 cut(s) 701, 1361, 1590, 3714
Bst6I CTCTTC 5 cut(s) 39, 633, 837, 2658, 3219
BstAPI GCANNNNNTGC 2 cut(s) 3115, 3642
BstBAI YACGTR 1 cut(s) 4024
BstC8I GCNNGC 7 cut(s) 291, 1595, 3074, 3388, 3643, 3710, 4142
BstDSI CCRYGG 3 cut(s) 181, 423, 1310
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 9 cut(s) 13, 440, 958, 1330, 1533, 1704, 3286, 3490, 3982
BstFNI CGCG 3 cut(s) 144, 183, 1617
BstH2I RGCGCY 6 cut(s) 134, 423, 737, 769, 1226, 2189
BstHHI GCGC 8 cut(s) 63, 133, 422, 736, 768, 1225, 2188, 2820
BstNI CCWGG 4 cut(s) 701, 1361, 1590, 3714
BstNSI RCATGY 5 cut(s) 1392, 1597, 3060, 3221, 3712
BstSCI CCNGG 8 cut(s) 98, 99, 612, 699, 1359, 1588, 3586, 3712
BstSFI CTRYAG 3 cut(s) 2086, 2985, 3132
BstSLI GKGCMC 2 cut(s) 2775, 2965
BstUI CGCG 3 cut(s) 144, 183, 1617
BstV1I GCAGC 6 cut(s) 45, 498, 892, 1866, 2999, 3620
BstV2I GAAGAC 7 cut(s) 99, 1415, 1428, 1518, 1561, 2432, 3670
BstX2I RGATCY 7 cut(s) 346, 665, 1198, 1315, 1970, 2564, 3879
BstXI CCANNNNNNTGG 1 cut(s) 916
BstYI RGATCY 7 cut(s) 346, 665, 1198, 1315, 1970, 2564, 3879
Bsu36I CCTNAGG 1 cut(s) 3686
BsuI GTATCC 2 cut(s) 3981, 4003
BsuRI GGCC 6 cut(s) 198, 236, 699, 2322, 3360, 3591
BtgI CCRYGG 3 cut(s) 181, 423, 1310
BtgZI GCGATG 2 cut(s) 1632, 3321
BtsCI GGATG 9 cut(s) 13, 440, 958, 1330, 1533, 1704, 3286, 3490, 3982
BtsI GCAGTG 5 cut(s) 1764, 2095, 2424, 2503, 3141
BtuMI TCGCGA 1 cut(s) 1617
BveI ACCTGC 1 cut(s) 2093
Cac8I GCNNGC 7 cut(s) 291, 1595, 3074, 3388, 3643, 3710, 4142
CciI TCATGA 1 cut(s) 1626
CfoI GCGC 8 cut(s) 63, 133, 422, 736, 768, 1225, 2188, 2820
Cfr10I RCCGGY 3 cut(s) 1159, 2490, 3966
Cfr13I GGNCC 5 cut(s) 178, 197, 374, 1107, 3358
Cfr42I CCGCGG 1 cut(s) 184
Cfr9I CCCGGG 1 cut(s) 99
CpoI CGGWCCG 1 cut(s) 374
CseI GACGC 2 cut(s) 150, 1433
CspAI ACCGGT 1 cut(s) 2490
CspI CGGWCCG 1 cut(s) 374
DrdI GACNNNNNNGTC 2 cut(s) 1305, 1430
DriI GACNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 2 cut(s) 1305, 1430
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 5 cut(s) 39, 633, 837, 2658, 3219
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 5 cut(s) 39, 633, 837, 2658, 3219
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 2790
Eco130I CCWWGG 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 2792
Eco31I GGTCTC 2 cut(s) 433, 605
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 3 cut(s) 178, 374, 1107
Eco47III AGCGCT 1 cut(s) 1224
Eco53kI GAGCTC 1 cut(s) 2790
Eco57I CTGAAG 6 cut(s) 67, 466, 1304, 1530, 4085, 4159
Eco81I CCTNAGG 1 cut(s) 3686
Eco88I CYCGRG 2 cut(s) 99, 630
EcoICRI GAGCTC 1 cut(s) 2790
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoRII CCWGG 4 cut(s) 699, 1359, 1588, 3712
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 1533
EcoT38I GRGCYC 1 cut(s) 2792
ErhI CCWWGG 1 cut(s) 729
Esp3I CGTCTC 1 cut(s) 2088
FalI AAGNNNNNCTT 4 cut(s) 1358, 1390, 2468, 2500
FaqI GGGAC 4 cut(s) 80, 200, 633, 3247
FauI CCCGC 1 cut(s) 176
FauNDI CATATG 1 cut(s) 4047
FbaI TGATCA 2 cut(s) 1534, 3979
FblI GTMKAC 1 cut(s) 1603
FokI GGATG 9 cut(s) 20, 447, 965, 1337, 1540, 1711, 3293, 3497, 3969
FriOI GRGCYC 1 cut(s) 2792
FspBI CTAG 8 cut(s) 161, 1118, 1242, 1352, 1379, 1679, 3171, 3533
GlaI GCGC 8 cut(s) 62, 132, 421, 735, 767, 1224, 2187, 2819
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 1953
HaeII RGCGCY 6 cut(s) 134, 423, 737, 769, 1226, 2189
HaeIII GGCC 6 cut(s) 198, 236, 699, 2322, 3360, 3591
HgaI GACGC 2 cut(s) 150, 1433
HhaI GCGC 8 cut(s) 63, 133, 422, 736, 768, 1225, 2188, 2820
Hin6I GCGC 8 cut(s) 61, 131, 420, 734, 766, 1223, 2186, 2818
HinP1I GCGC 8 cut(s) 61, 131, 420, 734, 766, 1223, 2186, 2818
HincII GTYRAC 4 cut(s) 30, 1738, 1837, 3333
HindII GTYRAC 4 cut(s) 30, 1738, 1837, 3333
HindIII AAGCTT 7 cut(s) 79, 1851, 2291, 2330, 2749, 3074, 3154
HpaI GTTAAC 1 cut(s) 1837
HphI GGTGA 8 cut(s) 103, 655, 1472, 1714, 1730, 2891, 3317, 4109
Hpy166II GTNNAC 9 cut(s) 30, 1310, 1604, 1738, 1837, 2266, 3062, 3333, 3405
Hpy8I GTNNAC 9 cut(s) 30, 1310, 1604, 1738, 1837, 2266, 3062, 3333, 3405
Hpy99I CGWCG 3 cut(s) 20, 144, 359
HpyCH4IV ACGT 3 cut(s) 69, 357, 4023
HpySE526I ACGT 3 cut(s) 69, 357, 4023
HspAI GCGC 8 cut(s) 61, 131, 420, 734, 766, 1223, 2186, 2818
Ksp22I TGATCA 2 cut(s) 1534, 3979
KspAI GTTAAC 1 cut(s) 1837
KspI CCGCGG 1 cut(s) 184
LmnI GCTCC 4 cut(s) 138, 385, 1859, 4060
Lsp1109I GCAGC 6 cut(s) 45, 498, 892, 1866, 2999, 3620
LweI GCATC 6 cut(s) 1102, 1270, 1380, 1518, 3092, 3271
MaeI CTAG 8 cut(s) 161, 1118, 1242, 1352, 1379, 1679, 3171, 3533
MaeII ACGT 3 cut(s) 69, 357, 4023
MfeI CAATTG 5 cut(s) 1428, 1756, 2074, 2946, 3998
MflI RGATCY 7 cut(s) 346, 665, 1198, 1315, 1970, 2564, 3879
MhlI GDGCHC 5 cut(s) 390, 2211, 2775, 2792, 2965
MlyI GAGTC 5 cut(s) 196, 218, 260, 1944, 2951
MmeI TCCRAC 6 cut(s) 160, 378, 667, 1080, 2788, 3998
Mph1103I ATGCAT 1 cut(s) 1533
MroXI GAANNNNTTC 4 cut(s) 1634, 3166, 3418, 3849
MslI CAYNNNNRTG 1 cut(s) 914
MspA1I CMGCKG 3 cut(s) 183, 896, 3653
MspR9I CCNGG 8 cut(s) 100, 101, 614, 701, 1361, 1590, 3588, 3714
MunI CAATTG 5 cut(s) 1428, 1756, 2074, 2946, 3998
Mva1269I GAATGC 2 cut(s) 3168, 3602
MvaI CCWGG 4 cut(s) 701, 1361, 1590, 3714
MvnI CGCG 3 cut(s) 144, 183, 1617
NciI CCSGG 4 cut(s) 100, 101, 614, 3588
NdeI CATATG 1 cut(s) 4047
NlaIV GGNNCC 4 cut(s) 348, 667, 1108, 2249
NmeAIII GCCGAG 2 cut(s) 206, 279
NmuCI GTSAC 4 cut(s) 1718, 2397, 2728, 3136
NruI TCGCGA 1 cut(s) 1617
NsiI ATGCAT 1 cut(s) 1533
NspI RCATGY 5 cut(s) 1392, 1597, 3060, 3221, 3712
PaeI GCATGC 2 cut(s) 1597, 3712
PagI TCATGA 1 cut(s) 1626
PciI ACATGT 1 cut(s) 3056
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PctI GAATGC 2 cut(s) 3168, 3602
PdmI GAANNNNTTC 4 cut(s) 1634, 3166, 3418, 3849
PinAI ACCGGT 1 cut(s) 2490
PleI GAGTC 5 cut(s) 196, 218, 260, 1943, 2950
PpsI GAGTC 5 cut(s) 196, 218, 260, 1943, 2950
Ppu21I YACGTR 1 cut(s) 4024
PscI ACATGT 1 cut(s) 3056
PshBI ATTAAT 2 cut(s) 882, 2226
PsiI TTATAA 1 cut(s) 4014
Psp124BI GAGCTC 1 cut(s) 2792
Psp6I CCWGG 4 cut(s) 699, 1359, 1588, 3712
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 4 cut(s) 699, 1359, 1588, 3712
PspN4I GGNNCC 4 cut(s) 348, 667, 1108, 2249
PspPI GGNCC 5 cut(s) 178, 197, 374, 1107, 3358
PsrI GAACNNNNNNTAC 2 cut(s) 930, 962
PstI CTGCAG 3 cut(s) 2090, 2989, 3136
PsuI RGATCY 7 cut(s) 346, 665, 1198, 1315, 1970, 2564, 3879
PvuII CAGCTG 1 cut(s) 3653
RruI TCGCGA 1 cut(s) 1617
RseI CAYNNNNRTG 1 cut(s) 914
Rsr2I CGGWCCG 1 cut(s) 374
RsrII CGGWCCG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 2792
SacII CCGCGG 1 cut(s) 184
Sau96I GGNCC 5 cut(s) 178, 197, 374, 1107, 3358
ScaI AGTACT 3 cut(s) 939, 1470, 2698
SchI GAGTC 5 cut(s) 196, 218, 260, 1944, 2951
ScrFI CCNGG 8 cut(s) 100, 101, 614, 701, 1361, 1590, 3588, 3714
SduI GDGCHC 5 cut(s) 390, 2211, 2775, 2792, 2965
SfaNI GCATC 6 cut(s) 1102, 1270, 1380, 1518, 3092, 3271
SfcI CTRYAG 3 cut(s) 2086, 2985, 3132
Sfr303I CCGCGG 1 cut(s) 184
SgrBI CCGCGG 1 cut(s) 184
SinI GGWCC 3 cut(s) 178, 374, 1107
SmaI CCCGGG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 9 cut(s) 268, 490, 2204, 2333, 2612, 2894, 2903, 3466, 3741
SmoI CTYRAG 9 cut(s) 268, 490, 2204, 2333, 2612, 2894, 2903, 3466, 3741
SphI GCATGC 2 cut(s) 1597, 3712
SspMI CTAG 8 cut(s) 161, 1118, 1242, 1352, 1379, 1679, 3171, 3533
SstI GAGCTC 1 cut(s) 2792
StyD4I CCNGG 8 cut(s) 98, 99, 612, 699, 1359, 1588, 3586, 3712
StyI CCWWGG 1 cut(s) 729
TaiI ACGT 3 cut(s) 72, 360, 4026
TaqI TCGA 7 cut(s) 151, 219, 1058, 2240, 2278, 2472, 3324
TatI WGTACW 4 cut(s) 937, 1468, 2696, 3497
TauI GCSGC 6 cut(s) 147, 233, 236, 367, 3378, 4042
TseFI GTSAC 4 cut(s) 1718, 2397, 2728, 3136
TseI GCWGC 6 cut(s) 58, 486, 905, 1879, 2987, 3633
Tsp45I GTSAC 4 cut(s) 1718, 2397, 2728, 3136
TspGWI ACGGA 3 cut(s) 597, 1011, 2112
TspMI CCCGGG 1 cut(s) 99
VpaK11BI GGWCC 3 cut(s) 178, 374, 1107
VspI ATTAAT 2 cut(s) 882, 2226
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 5 cut(s) 1725, 1900, 3547, 3848, 4168
XbaI TCTAGA 4 cut(s) 1117, 1351, 1378, 1678
XceI RCATGY 5 cut(s) 1392, 1597, 3060, 3221, 3712
XcmI CCANNNNNNNNNTGG 4 cut(s) 868, 2599, 3022, 4004
XmaI CCCGGG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 1603
XmnI GAANNNNTTC 4 cut(s) 1634, 3166, 3418, 3849
XspI CTAG 8 cut(s) 161, 1118, 1242, 1352, 1379, 1679, 3171, 3533
ZrmI AGTACT 3 cut(s) 939, 1470, 2698
Zsp2I ATGCAT 1 cut(s) 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.