Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001217

Physical Location & Seq

Genomic Coordinates Reverse (-)

5788950 .. 5790491

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1082600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCTTTCTAGTTTGATGGTTTTAAATATGAGAAAGAAGCACCAAAAGAGGGAACACACAGAAGAGATCAATTTTATACTCCCATCTTCTTTCTCAAATCTGTCCTTGCTATATGATCTGGATGCTTATGCTTGTAATATAGCTGGCAAAATATTTGATGATTTCGAGAGGTTGTCATCACTCGAAACCTTGAACTTAAGCCGCAATAGTTTTTGCAGCCTTCCAGCCAGTCTCAGGGGACTGTCCGTTCTTAAGAAGCTTTTGTTGTCTCATTGTAAAAAGCTCAAGTCTCTGCCTCCGCTTCCCTCGAGTTTGGATAAAGTGAATATTGCAAACTGCACCTCGTTAGAAAGTATCTCTGATATTTCAAACCTGCAAAACTTGGTGGAGCTGAACCTTACAAGTTGTGATAAAGTTGTCGATATTCCTGGCCTTGAATGCTTGAATTCCTTGGTGAGGTTGTATGCGAGTGGTTGCAATGCTTGCTCATCAGTTGTTAAGAAAAGACTTGCTAAGAGCTACTTGAGGAAAATACGCAATCTTAGCATGCCAGGAAGCAAGATACCAGACTGGTTTTCTCAAGATGTGGTTACATTCTCGGAGAGAAAAAACTGCGTTCTCAAAAGCGTGATCATAGGCGTCGTAGTCTCTCTCAACCAGCAAATACCAGATGAAATAAGAGAAGAACTCCCTGCAATAGTGGACATTCTAGCAAAGATCCTCGTAGTGGATTTTCCTACCTTCACTTCAGCATTGAACTTACAGGGAGTACCAAACACAAATGAAGACCAATTTCACTTGTGCCGATACCCGACGTGTCATCCCTTGGTTTCTCAGTTAAAAGAAGGTTATAAGATACATGTGACGAGGAGAGATCCGCCATTGATGAAAGGCGTCGAGCTGAAGAAGTGGGGGATTCGTTTGGTCTACGAAGATGATGATGATTACGAGGGAGATGAAGAGTCATTAAATGAAAGCCAGCAATCCTTGTCAGAAAAACTGGCCAAGTTTTTCGGCTCGTTTGAAGAAGGTGACTGCAGCTGCACACTCCTGAATCCAGTTCTAGTGCACATGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

361

Amino Acids

40.46

Weight (kDa)

6.66

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_R13L1-DRL21	PF25019	4 - 112	9.3e-06	R13L1/DRL21 LRRs
LRR_14	PF23598	35 - 182	1.3e-06	Leucine-rich repeat region
LRR_8	PF13855	55 - 93	7.2e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27170 AT1G27170 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180
fragaria_vesca	FvH4_4g35411 FvH4_4g35411 FvH4_4g35420 FvH4_4g35430
malus_domestica	MD16G1082200.v1.1 MD16G1082300.v1.1 MD16G1082600.v1.1 MD16G1082700.v1.1
prunus_persica	Prupe.1G263400_v2.0.a1 Prupe.1G263500_v2.0.a1 Prupe.1G263600_v2.0.a1
pyrus_communis	pycom16g07120 pycom16g07140 pycom16g07150 pycom16g07160 pycom16g23330
rosa_chinensis	RchiOBHm_Chr4g0445031 RchiOBHm_Chr4g0445061
rosa_laevigata	RLG00000005773 RLG00000005775
rosa_multiflora	Rmu_co8224486.1_g000001 Rmu_co8310049.1_g000001 Rmu_co8516079.1_g000001 Rmu_sc0003784.1_g000008 Rmu_sc0003784.1_g000020 Rmu_sc0003784.1_g000021 Rmu_sc0019418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385560 Rroxscaffold_5G00385590
rosa_rugosa	Rorug04G0357900 Rorug04G0358000 Rorug04G0358100 Rorug04G0358200 Rorug04G0358300 Rorug04G0358400
rosa_samantha	Rh4AG419400 Rh4AG419500 Rh4BG431100 Rh4BG431200 Rh4CG445500 Rh4CG445700 Rh4DG427000 Rh4DG427200
rosa_wichuraiana	Rw4G035910 Rw4G035930 Rw4G035940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
Acc36I	ACCTGC	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	927
AciI	CCGC	3 cut(s)	202, 299, 878
AclWI	GGATC	2 cut(s)	712, 869
AcoI	YGGCCR	1 cut(s)	1002
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	2 cut(s)	732, 923
AcyI	GRCGYC	2 cut(s)	639, 894
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	4 cut(s)	49, 234, 456, 727
AflII	CTTAAG	2 cut(s)	196, 251
AflIII	ACRYGT	2 cut(s)	815, 859
AgsI	TTSAA	6 cut(s)	193, 369, 437, 445, 757, 1025
AjiI	CACGTC	1 cut(s)	816
AjnI	CCWGG	2 cut(s)	427, 550
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	7 cut(s)	143, 259, 283, 391, 519, 901, 1041
AluI	AGCT	7 cut(s)	143, 259, 283, 391, 519, 901, 1041
Alw21I	GWGCWC	1 cut(s)	1071
Alw26I	GTCTC	4 cut(s)	236, 273, 294, 652
Alw44I	GTGCAC	1 cut(s)	1067
AlwI	GGATC	2 cut(s)	712, 869
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	430, 1002
ApaLI	GTGCAC	1 cut(s)	1067
ApeKI	GCWGC	3 cut(s)	216, 1038, 1041
ApoI	RAATTY	1 cut(s)	445
AsuHPI	GGTGA	2 cut(s)	466, 1043
AvaI	CYCGRG	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	1071
BalI	TGGCCA	1 cut(s)	1004
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	1 cut(s)	1071
BbvI	GCAGC	3 cut(s)	228, 1028, 1050
BccI	CCATC	2 cut(s)	10, 91
BciT130I	CCWGG	2 cut(s)	429, 552
BclI	TGATCA	1 cut(s)	630
BcoDI	GTCTC	4 cut(s)	236, 273, 294, 652
BfaI	CTAG	3 cut(s)	9, 710, 1064
BfmI	CTRYAG	1 cut(s)	1036
BfrI	CTTAAG	2 cut(s)	196, 251
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	4 cut(s)	202, 217, 1039, 1042
BlsI	GCNGC	4 cut(s)	203, 218, 1040, 1043
Bme1390I	CCNGG	2 cut(s)	429, 552
BmeT110I	CYCGRG	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	816
BmrFI	CCNGG	2 cut(s)	429, 552
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	792
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
BpuEI	CTTGAG	3 cut(s)	269, 544, 564
BsaHI	GRCGYC	2 cut(s)	639, 894
BsaJI	CCNNGG	2 cut(s)	450, 825
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 234, 456, 727
Bse1I	ACTGG	4 cut(s)	228, 575, 1005, 1058
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	2 cut(s)	429, 552
BseDI	CCNNGG	2 cut(s)	450, 825
BseGI	GGATG	2 cut(s)	127, 820
BseLI	CCNNNNNNNGG	4 cut(s)	49, 234, 456, 727
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	247, 848
BseNI	ACTGG	4 cut(s)	228, 575, 1005, 1058
BseRI	GAGGAG	1 cut(s)	883
BseSI	GKGCMC	1 cut(s)	1071
BseXI	GCAGC	3 cut(s)	228, 1028, 1050
BsgI	GTGCAG	2 cut(s)	322, 1027
BshFI	GGCC	2 cut(s)	432, 1004
BsiHKAI	GWGCWC	1 cut(s)	1071
BsiHKCI	CYCGRG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	4 cut(s)	49, 234, 456, 727
BsmAI	GTCTC	4 cut(s)	236, 273, 294, 652
BsmFI	GGGAC	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	432, 1004
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	1071
Bsp143I	GATC	5 cut(s)	66, 115, 630, 717, 874
BspACI	CCGC	3 cut(s)	202, 299, 878
BspANI	GGCC	2 cut(s)	432, 1004
BspCNI	CTCAG	2 cut(s)	246, 847
BspMAI	CTGCAG	1 cut(s)	1040
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	712, 869
BspTI	CTTAAG	2 cut(s)	196, 251
BsrDI	GCAATG	1 cut(s)	484
BsrI	ACTGG	4 cut(s)	228, 575, 1005, 1058
BssECI	CCNNGG	2 cut(s)	450, 825
BssMI	GATC	5 cut(s)	66, 115, 630, 717, 874
BssNI	GRCGYC	2 cut(s)	639, 894
BssT1I	CCWWGG	2 cut(s)	450, 825
Bst2UI	CCWGG	2 cut(s)	429, 552
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	57, 954
BstACI	GRCGYC	2 cut(s)	639, 894
BstAFI	CTTAAG	2 cut(s)	196, 251
BstAPI	GCANNNNNTGC	1 cut(s)	483
BstC8I	GCNNGC	4 cut(s)	145, 484, 548, 980
BstDEI	CTNAG	4 cut(s)	233, 513, 542, 834
BstENI	CCTNNNNNAGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	127, 820
BstKTI	GATC	5 cut(s)	69, 118, 633, 720, 877
BstMAI	GTCTC	4 cut(s)	236, 273, 294, 652
BstMBI	GATC	5 cut(s)	66, 115, 630, 717, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	438, 483, 543
BstNI	CCWGG	2 cut(s)	429, 552
BstNSI	RCATGY	2 cut(s)	550, 863
BstSCI	CCNGG	2 cut(s)	427, 550
BstSFI	CTRYAG	1 cut(s)	1036
BstSLI	GKGCMC	1 cut(s)	1071
BstV1I	GCAGC	3 cut(s)	228, 1028, 1050
BstV2I	GAAGAC	1 cut(s)	792
BstX2I	RGATCY	2 cut(s)	717, 874
BstYI	RGATCY	2 cut(s)	717, 874
BsuRI	GGCC	2 cut(s)	432, 1004
BtrI	CACGTC	1 cut(s)	816
BtsCI	GGATG	2 cut(s)	127, 820
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	4 cut(s)	145, 484, 548, 980
CseI	GACGC	2 cut(s)	628, 883
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	3 cut(s)	547, 860, 1072
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	4 cut(s)	233, 513, 542, 834
DpnI	GATC	5 cut(s)	68, 117, 632, 719, 876
DpnII	GATC	5 cut(s)	66, 115, 630, 717, 874
DraI	TTTAAA	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	1002
Eam1104I	CTCTTC	2 cut(s)	57, 954
EarI	CTCTTC	2 cut(s)	57, 954
EciI	GGCGGA	1 cut(s)	867
Eco130I	CCWWGG	2 cut(s)	450, 825
Eco57I	CTGAAG	2 cut(s)	732, 923
Eco88I	CYCGRG	1 cut(s)	307
EcoNI	CCTNNNNNAGG	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	427, 550
EcoT14I	CCWWGG	2 cut(s)	450, 825
ErhI	CCWWGG	2 cut(s)	450, 825
FaeI	CATG	3 cut(s)	550, 863, 1075
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	3 cut(s)	546, 859, 1071
FbaI	TGATCA	1 cut(s)	630
FblI	GTMKAC	1 cut(s)	927
Fnu4HI	GCNGC	4 cut(s)	202, 217, 1039, 1042
FokI	GGATG	2 cut(s)	134, 807
Fsp4HI	GCNGC	4 cut(s)	202, 217, 1039, 1042
FspBI	CTAG	3 cut(s)	9, 710, 1064
GluI	GCNGC	4 cut(s)	202, 217, 1039, 1042
HaeIII	GGCC	2 cut(s)	432, 1004
HgaI	GACGC	2 cut(s)	628, 883
Hin1I	GRCGYC	2 cut(s)	639, 894
Hin1II	CATG	3 cut(s)	550, 863, 1075
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	3 cut(s)	916, 962, 1054
HphI	GGTGA	2 cut(s)	466, 1043
Hpy166II	GTNNAC	3 cut(s)	703, 928, 1069
Hpy188I	TCNGA	3 cut(s)	361, 601, 994
Hpy188III	TCNNGA	4 cut(s)	119, 166, 581, 1051
Hpy8I	GTNNAC	3 cut(s)	703, 928, 1069
Hpy99I	CGWCG	3 cut(s)	644, 817, 899
HpyAV	CCTTC	4 cut(s)	230, 751, 839, 1022
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	815
HpyCH4V	TGCA	9 cut(s)	216, 332, 339, 376, 477, 695, 1038, 1044, 1069
HpyF10VI	GCNNNNNNNGC	3 cut(s)	438, 483, 543
HpyF3I	CTNAG	4 cut(s)	233, 513, 542, 834
HpySE526I	ACGT	1 cut(s)	815
Hsp92I	GRCGYC	2 cut(s)	639, 894
Hsp92II	CATG	3 cut(s)	550, 863, 1075
Ksp22I	TGATCA	1 cut(s)	630
Kzo9I	GATC	5 cut(s)	66, 115, 630, 717, 874
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	3 cut(s)	228, 1028, 1050
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	3 cut(s)	9, 710, 1064
MaeII	ACGT	1 cut(s)	815
MaeIII	GTNAC	3 cut(s)	589, 862, 1031
MalI	GATC	5 cut(s)	68, 117, 632, 719, 876
MboI	GATC	5 cut(s)	66, 115, 630, 717, 874
MboII	GAAGA	8 cut(s)	74, 78, 695, 797, 916, 944, 971, 1037
MflI	RGATCY	2 cut(s)	717, 874
MhlI	GDGCHC	1 cut(s)	1071
MlsI	TGGCCA	1 cut(s)	1004
MluCI	AATT	3 cut(s)	70, 445, 791
MluNI	TGGCCA	1 cut(s)	1004
MlyI	GAGTC	1 cut(s)	971
Mox20I	TGGCCA	1 cut(s)	1004
MscI	TGGCCA	1 cut(s)	1004
MseI	TTAA	6 cut(s)	23, 197, 252, 498, 839, 968
Msp20I	TGGCCA	1 cut(s)	1004
MspA1I	CMGCKG	1 cut(s)	1041
MspCI	CTTAAG	2 cut(s)	196, 251
MspR9I	CCNGG	2 cut(s)	429, 552
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	2 cut(s)	429, 552
MwoI	GCNNNNNNNGC	3 cut(s)	438, 483, 543
NdeII	GATC	5 cut(s)	66, 115, 630, 717, 874
NlaIII	CATG	3 cut(s)	550, 863, 1075
NmuCI	GTSAC	2 cut(s)	862, 1031
NspI	RCATGY	2 cut(s)	550, 863
PaeI	GCATGC	1 cut(s)	550
PaeR7I	CTCGAG	1 cut(s)	307
PciI	ACATGT	1 cut(s)	859
PctI	GAATGC	1 cut(s)	443
PfeI	GAWTC	2 cut(s)	916, 1054
PkrI	GCNGC	4 cut(s)	203, 218, 1040, 1043
PleI	GAGTC	1 cut(s)	970
PpsI	GAGTC	1 cut(s)	970
PscI	ACATGT	1 cut(s)	859
PsiI	TTATAA	1 cut(s)	852
Psp6I	CCWGG	2 cut(s)	427, 550
PspGI	CCWGG	2 cut(s)	427, 550
PspXI	VCTCGAGB	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	1040
PsuI	RGATCY	2 cut(s)	717, 874
PvuII	CAGCTG	1 cut(s)	1041
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
SaqAI	TTAA	6 cut(s)	23, 197, 252, 498, 839, 968
SatI	GCNGC	4 cut(s)	202, 217, 1039, 1042
Sau3AI	GATC	5 cut(s)	66, 115, 630, 717, 874
SchI	GAGTC	1 cut(s)	971
ScrFI	CCNGG	2 cut(s)	429, 552
SduI	GDGCHC	1 cut(s)	1071
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	1036
Sfr274I	CTCGAG	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	307
SmlI	CTYRAG	6 cut(s)	196, 251, 284, 307, 523, 579
SmoI	CTYRAG	6 cut(s)	196, 251, 284, 307, 523, 579
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	3 cut(s)	70, 445, 791
SsiI	CCGC	3 cut(s)	202, 299, 878
SspI	AATATT	2 cut(s)	153, 328
SspMI	CTAG	3 cut(s)	9, 710, 1064
StyD4I	CCNGG	2 cut(s)	427, 550
StyI	CCWWGG	2 cut(s)	450, 825
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	1 cut(s)	818
TaqI	TCGA	5 cut(s)	165, 183, 308, 420, 897
TasI	AATT	3 cut(s)	70, 445, 791
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	916, 1054
Tru1I	TTAA	6 cut(s)	23, 197, 252, 498, 839, 968
Tru9I	TTAA	6 cut(s)	23, 197, 252, 498, 839, 968
TseFI	GTSAC	2 cut(s)	862, 1031
TseI	GCWGC	3 cut(s)	216, 1038, 1041
Tsp45I	GTSAC	2 cut(s)	862, 1031
TspDTI	ATGAA	5 cut(s)	687, 798, 902, 972, 987
TspGWI	ACGGA	1 cut(s)	235
Vha464I	CTTAAG	2 cut(s)	196, 251
VneI	GTGCAC	1 cut(s)	1067
XagI	CCTNNNNNAGG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	2 cut(s)	550, 863
XhoI	CTCGAG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	927
XspI	CTAG	3 cut(s)	9, 710, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.