Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003784.1

Orthogroup ID

OG0001217

Physical Location & Seq

Genomic Coordinates Forward (+)

75192 .. 76136

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003784.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgggtctcactccgtacccggtgggacttcattcccgagttgaagaggtgatgaagctgttagatatcggatccaaaaccgttcaagttgtcggagttcatggcctgggcggtattggcaaaacaacccttgccaaggctctttttaatagactcgttggttattttgagcgccacagtttcatctcaaatgttagagaaatctcagcaggacatgatgagaagggtttagtaactcttcaaaacatactggtcagtgatctttccaatgggaagatggctaaaattaatcagactaccgctggtatcgctgccatcaaagtggttgtgaatgagaagcgagtacttgttgttctggatgatgttgataacagagaccaactaagtgctttagttggcaacggacaatggttttatgaaggaagccgaattattgttacgacgagagatagagaactcttatcgaatcatcgtgtcaatcataaattgtatgaggtcagggagttggacaagtccgatgctctagaacttttcagtcaccatgcactgggaattagagaaataccggcagatacctttctgaaactatctaaggagattgtggatcttactggtgggctaccgttagcgcttgaagtatttggctctagcctctatgataagaggacagaaaaggtatggatagatgctctgcataaactgagacagattcgtccacgggatcttcaggatgtcctgatgataagctacaatgctctagatgaccaggagaagtgcatctttctagacattgcatgtttatttgttaaaataaagaccaaaagagaagacgcaattgtcatattgaagggttgtggttttgatggtgagatagtacttactgtcctcacagcaagatcactcattaagatcactgaagacactacatgcattatggatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

314

Amino Acids

34.98

Weight (kDa)

6.52

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27170 AT1G27170 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180
fragaria_vesca	FvH4_4g35411 FvH4_4g35411 FvH4_4g35420 FvH4_4g35430
malus_domestica	MD16G1082200.v1.1 MD16G1082300.v1.1 MD16G1082600.v1.1 MD16G1082700.v1.1
prunus_persica	Prupe.1G263400_v2.0.a1 Prupe.1G263500_v2.0.a1 Prupe.1G263600_v2.0.a1
pyrus_communis	pycom16g07120 pycom16g07140 pycom16g07150 pycom16g07160 pycom16g23330
rosa_chinensis	RchiOBHm_Chr4g0445031 RchiOBHm_Chr4g0445061
rosa_laevigata	RLG00000005773 RLG00000005775
rosa_multiflora	Rmu_co8224486.1_g000001 Rmu_co8310049.1_g000001 Rmu_co8516079.1_g000001 Rmu_sc0003784.1_g000008 Rmu_sc0003784.1_g000020 Rmu_sc0003784.1_g000021 Rmu_sc0019418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385560 Rroxscaffold_5G00385590
rosa_rugosa	Rorug04G0357900 Rorug04G0358000 Rorug04G0358100 Rorug04G0358200 Rorug04G0358300 Rorug04G0358400
rosa_samantha	Rh4AG419400 Rh4AG419500 Rh4BG431100 Rh4BG431200 Rh4CG445500 Rh4CG445700 Rh4DG427000 Rh4DG427200
rosa_wichuraiana	Rw4G035910 Rw4G035930 Rw4G035940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	711, 836
AccB7I	CCANNNNNTGG	1 cut(s)	547
AciI	CCGC	2 cut(s)	111, 300
AclWI	GGATC	4 cut(s)	66, 79, 612, 729
AcuI	CTGAAG	2 cut(s)	710, 936
AfaI	GTAC	3 cut(s)	17, 345, 876
AfeI	AGCGCT	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	136, 547
AgsI	TTSAA	5 cut(s)	44, 86, 242, 635, 847
AjnI	CCWGG	2 cut(s)	105, 765
AluBI	AGCT	2 cut(s)	58, 747
AluI	AGCT	2 cut(s)	58, 747
Alw26I	GTCTC	3 cut(s)	11, 369, 697
AlwI	GGATC	4 cut(s)	66, 79, 612, 729
Ama87I	CYCGRG	1 cut(s)	36
Aor51HI	AGCGCT	1 cut(s)	630
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	311
AseI	ATTAAT	1 cut(s)	288
AspLEI	GCGC	2 cut(s)	174, 631
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	3 cut(s)	61, 530, 878
AvaI	CYCGRG	1 cut(s)	36
BamHI	GGATCC	1 cut(s)	71
BbsI	GAAGAC	2 cut(s)	834, 924
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	3 cut(s)	271, 323, 857
BciT130I	CCWGG	2 cut(s)	107, 767
BcnI	CCSGG	1 cut(s)	20
BcoDI	GTCTC	3 cut(s)	11, 369, 697
BfaI	CTAG	4 cut(s)	524, 648, 758, 785
BfoI	RGCGCY	2 cut(s)	175, 632
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
BmcAI	AGTACT	2 cut(s)	345, 876
Bme1390I	CCNGG	3 cut(s)	20, 107, 767
BmeT110I	CYCGRG	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	3 cut(s)	20, 107, 767
BmrI	ACTGGG	1 cut(s)	557
BmsI	GCATC	4 cut(s)	508, 676, 786, 928
BmuI	ACTGGG	1 cut(s)	557
BpiI	GAAGAC	2 cut(s)	834, 924
BpuMI	CCSGG	1 cut(s)	20
BsaI	GGTCTC	2 cut(s)	11, 369
BsaJI	CCNNGG	3 cut(s)	106, 135, 716
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 547
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	3 cut(s)	255, 552, 616
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	107, 767
BseDI	CCNNGG	3 cut(s)	106, 135, 716
BseGI	GGATG	3 cut(s)	364, 736, 943
BseLI	CCNNNNNNNGG	2 cut(s)	136, 547
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	219, 692
BseNI	ACTGG	3 cut(s)	255, 552, 616
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	20, 566
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	136, 547
BsmAI	GTCTC	3 cut(s)	11, 369, 697
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	2 cut(s)	11, 369
BsoBI	CYCGRG	1 cut(s)	36
Bsp143I	GATC	6 cut(s)	71, 259, 604, 721, 896, 909
BspACI	CCGC	2 cut(s)	111, 300
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	218, 693
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	4 cut(s)	66, 79, 612, 729
BspTNI	GGTCTC	2 cut(s)	11, 369
BsrDI	GCAATG	1 cut(s)	789
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	3 cut(s)	255, 552, 616
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	3 cut(s)	106, 135, 716
BssMI	GATC	6 cut(s)	71, 259, 604, 721, 896, 909
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	107, 767
Bst4CI	ACNGT	4 cut(s)	82, 179, 624, 883
Bst6I	CTCTTC	2 cut(s)	39, 243
BstDEI	CTNAG	4 cut(s)	205, 383, 591, 701
BstDSI	CCRYGG	1 cut(s)	716
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	364, 736, 943
BstH2I	RGCGCY	2 cut(s)	175, 632
BstHHI	GCGC	2 cut(s)	174, 631
BstKTI	GATC	6 cut(s)	74, 262, 607, 724, 899, 912
BstMAI	GTCTC	3 cut(s)	11, 369, 697
BstMBI	GATC	6 cut(s)	71, 259, 604, 721, 896, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 308
BstNI	CCWGG	2 cut(s)	107, 767
BstNSI	RCATGY	2 cut(s)	798, 930
BstSCI	CCNGG	3 cut(s)	18, 105, 765
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	2 cut(s)	834, 924
BstX2I	RGATCY	3 cut(s)	71, 604, 721
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstYI	RGATCY	3 cut(s)	71, 604, 721
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	716
BtsCI	GGATG	3 cut(s)	364, 736, 943
BtsIMutI	CAGTG	3 cut(s)	262, 545, 912
CfoI	GCGC	2 cut(s)	174, 631
Cfr10I	RCCGGY	1 cut(s)	565
CseI	GACGC	1 cut(s)	839
Csp6I	GTAC	3 cut(s)	16, 344, 875
CviAII	CATG	6 cut(s)	101, 215, 542, 795, 927, 942
CviJI	RGCY	9 cut(s)	58, 105, 140, 281, 426, 619, 645, 651, 747
CviKI_1	RGCY	9 cut(s)	58, 105, 140, 281, 426, 619, 645, 651, 747
CviQI	GTAC	3 cut(s)	16, 344, 875
DdeI	CTNAG	4 cut(s)	205, 383, 591, 701
DpnI	GATC	6 cut(s)	73, 261, 606, 723, 898, 911
DpnII	GATC	6 cut(s)	71, 259, 604, 721, 896, 909
DrdI	GACNNNNNNGTC	2 cut(s)	711, 836
DseDI	GACNNNNNNGTC	2 cut(s)	711, 836
Eam1104I	CTCTTC	2 cut(s)	39, 243
EarI	CTCTTC	2 cut(s)	39, 243
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	2 cut(s)	11, 369
Eco32I	GATATC	1 cut(s)	67
Eco47III	AGCGCT	1 cut(s)	630
Eco57I	CTGAAG	2 cut(s)	710, 936
Eco88I	CYCGRG	1 cut(s)	36
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	105, 765
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	2 cut(s)	932, 943
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	6 cut(s)	104, 218, 545, 798, 930, 945
FalI	AAGNNNNNCTT	2 cut(s)	764, 796
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	6 cut(s)	100, 214, 541, 794, 926, 941
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	371, 743
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	4 cut(s)	524, 648, 758, 785
GlaI	GCGC	2 cut(s)	173, 630
GluI	GCNGC	1 cut(s)	312
HaeII	RGCGCY	2 cut(s)	175, 632
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	2 cut(s)	20, 566
HgaI	GACGC	1 cut(s)	839
HhaI	GCGC	2 cut(s)	174, 631
Hin1II	CATG	6 cut(s)	104, 218, 545, 798, 930, 945
Hin6I	GCGC	2 cut(s)	172, 629
HinP1I	GCGC	2 cut(s)	172, 629
HinfI	GANTC	3 cut(s)	153, 466, 709
HpaII	CCGG	2 cut(s)	20, 566
HphI	GGTGA	3 cut(s)	61, 530, 878
Hpy166II	GTNNAC	1 cut(s)	716
Hpy188I	TCNGA	5 cut(s)	71, 95, 294, 517, 582
Hpy188III	TCNNGA	7 cut(s)	36, 356, 524, 728, 736, 758, 785
Hpy8I	GTNNAC	1 cut(s)	716
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	3 cut(s)	217, 413, 841
HpyCH4III	ACNGT	4 cut(s)	82, 179, 624, 883
HpyCH4V	TGCA	6 cut(s)	545, 694, 777, 794, 930, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 308
HpyF3I	CTNAG	4 cut(s)	205, 383, 591, 701
Hsp92II	CATG	6 cut(s)	104, 218, 545, 798, 930, 945
HspAI	GCGC	2 cut(s)	172, 629
Kzo9I	GATC	6 cut(s)	71, 259, 604, 721, 896, 909
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	4 cut(s)	508, 676, 786, 928
MaeI	CTAG	4 cut(s)	524, 648, 758, 785
MaeIII	GTNAC	3 cut(s)	232, 436, 536
MalI	GATC	6 cut(s)	73, 261, 606, 723, 898, 911
MboI	GATC	6 cut(s)	71, 259, 604, 721, 896, 909
MboII	GAAGA	6 cut(s)	56, 230, 286, 716, 839, 929
MfeI	CAATTG	1 cut(s)	834
MflI	RGATCY	3 cut(s)	71, 604, 721
MluCI	AATT	5 cut(s)	285, 429, 485, 552, 834
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	2 cut(s)	73, 486
MnlI	CCTC	5 cut(s)	40, 487, 657, 662, 896
Mph1103I	ATGCAT	2 cut(s)	932, 943
MseI	TTAA	4 cut(s)	147, 288, 807, 906
MslI	CAYNNNNRTG	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	20, 566
MspR9I	CCNGG	3 cut(s)	20, 107, 767
MunI	CAATTG	1 cut(s)	834
MvaI	CCWGG	2 cut(s)	107, 767
MwoI	GCNNNNNNNGC	2 cut(s)	117, 308
NciI	CCSGG	1 cut(s)	20
NdeII	GATC	6 cut(s)	71, 259, 604, 721, 896, 909
NlaIII	CATG	6 cut(s)	104, 218, 545, 798, 930, 945
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	2 cut(s)	932, 943
NspI	RCATGY	2 cut(s)	798, 930
PfeI	GAWTC	2 cut(s)	466, 709
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	105, 765
PspGI	CCWGG	2 cut(s)	105, 765
PspN4I	GGNNCC	1 cut(s)	73
PsrI	GAACNNNNNNTAC	2 cut(s)	336, 368
PsuI	RGATCY	3 cut(s)	71, 604, 721
RsaI	GTAC	3 cut(s)	17, 345, 876
RsaNI	GTAC	3 cut(s)	16, 344, 875
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	4 cut(s)	147, 288, 807, 906
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	6 cut(s)	71, 259, 604, 721, 896, 909
ScaI	AGTACT	2 cut(s)	345, 876
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	3 cut(s)	20, 107, 767
SetI	ASST	6 cut(s)	51, 60, 498, 578, 678, 749
SfaNI	GCATC	4 cut(s)	508, 676, 786, 928
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	285, 429, 485, 552, 834
SsiI	CCGC	2 cut(s)	111, 300
SspMI	CTAG	4 cut(s)	524, 648, 758, 785
StyD4I	CCNGG	3 cut(s)	18, 105, 765
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	82, 179, 624, 883
TaqI	TCGA	1 cut(s)	464
TasI	AATT	5 cut(s)	285, 429, 485, 552, 834
TatI	WGTACW	2 cut(s)	343, 874
TfiI	GAWTC	2 cut(s)	466, 709
Tru1I	TTAA	4 cut(s)	147, 288, 807, 906
Tru9I	TTAA	4 cut(s)	147, 288, 807, 906
TscAI	CASTG	3 cut(s)	262, 552, 919
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	5 cut(s)	20, 68, 89, 172, 432
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	3 cut(s)	262, 552, 919
Van91I	CCANNNNNTGG	1 cut(s)	547
VspI	ATTAAT	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	134
XbaI	TCTAGA	3 cut(s)	523, 757, 784
XceI	RCATGY	2 cut(s)	798, 930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	4 cut(s)	524, 648, 758, 785
ZrmI	AGTACT	2 cut(s)	345, 876
Zsp2I	ATGCAT	2 cut(s)	932, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.