Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8310049.1

Orthogroup ID

OG0001217

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 877

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8310049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgaagctgttagatatcggatccaaaaccgttcaagttgtcggagttcatggcctgggcggtattggcaaaacaacccttgccaaggctctttttaatagactcgttggttattttgagcgccacagtttcatctcaaatgttagagaaatctcagcaggacatgatgagaagggtttagtaactcttcaaaacatactggtcagtgatctttccaatgggaagatggctaaaattaatcagactaccgctggtatcgctgccatcaaagtggttgtgaatgagaagcgagtacttgttgttctggatgatgttgacaacatagaccaactaagtgctttagttggcaacggacaatggttttatgaaggaagccgaattattgttacgacgagagatagagaactcttatcgaatcatcgtgtcaatcataaattgtatgaggtcagggagttggacaagtccgatgctctagaacttttcagtcaccatgcactgggaattagagaaataccggcagatacctttctgaaactatctaaggagattgtggatcttactggtgggctaccgttagcgcttgaagtatttggctctagcctctatgataagaggacagaaaaggtatggatagatgctctgcataaactgagacagattcgtccacgggatcttcaggatgtcctgatgataagctacaatgctctagatgaccaggagaagtgcatctttctagacattgcatgtttatttgttaaaatgaagaccaaaagagaagacgcaattgtcatattgaagggttgtggttttgatggtgagatagtacttactgtcctcacagcaagatcactcattaagatcactgaagacactaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

292

Amino Acids

32.55

Weight (kDa)

6.72

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27170 AT1G27170 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180 AT1G27180
fragaria_vesca	FvH4_4g35411 FvH4_4g35411 FvH4_4g35420 FvH4_4g35430
malus_domestica	MD16G1082200.v1.1 MD16G1082300.v1.1 MD16G1082600.v1.1 MD16G1082700.v1.1
prunus_persica	Prupe.1G263400_v2.0.a1 Prupe.1G263500_v2.0.a1 Prupe.1G263600_v2.0.a1
pyrus_communis	pycom16g07120 pycom16g07140 pycom16g07150 pycom16g07160 pycom16g23330
rosa_chinensis	RchiOBHm_Chr4g0445031 RchiOBHm_Chr4g0445061
rosa_laevigata	RLG00000005773 RLG00000005775
rosa_multiflora	Rmu_co8224486.1_g000001 Rmu_co8310049.1_g000001 Rmu_co8516079.1_g000001 Rmu_sc0003784.1_g000008 Rmu_sc0003784.1_g000020 Rmu_sc0003784.1_g000021 Rmu_sc0019418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00385560 Rroxscaffold_5G00385590
rosa_rugosa	Rorug04G0357900 Rorug04G0358000 Rorug04G0358100 Rorug04G0358200 Rorug04G0358300 Rorug04G0358400
rosa_samantha	Rh4AG419400 Rh4AG419500 Rh4BG431100 Rh4BG431200 Rh4CG445500 Rh4CG445700 Rh4DG427000 Rh4DG427200
rosa_wichuraiana	Rw4G035910 Rw4G035930 Rw4G035940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	660, 785
AccB7I	CCANNNNNTGG	1 cut(s)	496
AciI	CCGC	2 cut(s)	60, 249
AclWI	GGATC	4 cut(s)	15, 28, 561, 678
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	294, 825
AfeI	AGCGCT	1 cut(s)	579
AfiI	CCNNNNNNNGG	2 cut(s)	85, 496
AgsI	TTSAA	4 cut(s)	35, 191, 584, 796
AjnI	CCWGG	2 cut(s)	54, 714
AluBI	AGCT	2 cut(s)	7, 696
AluI	AGCT	2 cut(s)	7, 696
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	4 cut(s)	15, 28, 561, 678
Aor51HI	AGCGCT	1 cut(s)	579
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	260
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	123, 580
AsuHPI	GGTGA	2 cut(s)	479, 827
BamHI	GGATCC	1 cut(s)	20
BbsI	GAAGAC	2 cut(s)	770, 783
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	220, 272, 806
BciT130I	CCWGG	2 cut(s)	56, 716
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	4 cut(s)	473, 597, 707, 734
BfoI	RGCGCY	2 cut(s)	124, 581
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmcAI	AGTACT	2 cut(s)	294, 825
Bme1390I	CCNGG	2 cut(s)	56, 716
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	56, 716
BmrI	ACTGGG	1 cut(s)	506
BmsI	GCATC	3 cut(s)	457, 625, 735
BmuI	ACTGGG	1 cut(s)	506
BpiI	GAAGAC	2 cut(s)	770, 783
BsaJI	CCNNGG	3 cut(s)	55, 84, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 496
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	3 cut(s)	204, 501, 565
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	2 cut(s)	56, 716
BseDI	CCNNGG	3 cut(s)	55, 84, 665
BseGI	GGATG	2 cut(s)	313, 685
BseLI	CCNNNNNNNGG	2 cut(s)	85, 496
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	168, 641
BseNI	ACTGG	3 cut(s)	204, 501, 565
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	85, 496
BsmAI	GTCTC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	6 cut(s)	20, 208, 553, 670, 845, 858
BspACI	CCGC	2 cut(s)	60, 249
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	167, 642
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	4 cut(s)	15, 28, 561, 678
BsrDI	GCAATG	1 cut(s)	738
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	3 cut(s)	204, 501, 565
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	3 cut(s)	55, 84, 665
BssMI	GATC	6 cut(s)	20, 208, 553, 670, 845, 858
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	56, 716
Bst4CI	ACNGT	4 cut(s)	31, 128, 573, 832
Bst6I	CTCTTC	1 cut(s)	192
BstDEI	CTNAG	4 cut(s)	154, 332, 540, 650
BstDSI	CCRYGG	1 cut(s)	665
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	313, 685
BstH2I	RGCGCY	2 cut(s)	124, 581
BstHHI	GCGC	2 cut(s)	123, 580
BstKTI	GATC	6 cut(s)	23, 211, 556, 673, 848, 861
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	6 cut(s)	20, 208, 553, 670, 845, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 257
BstNI	CCWGG	2 cut(s)	56, 716
BstNSI	RCATGY	1 cut(s)	747
BstSCI	CCNGG	2 cut(s)	54, 714
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	2 cut(s)	770, 783
BstX2I	RGATCY	3 cut(s)	20, 553, 670
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	3 cut(s)	20, 553, 670
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	2 cut(s)	313, 685
BtsIMutI	CAGTG	3 cut(s)	211, 494, 861
CfoI	GCGC	2 cut(s)	123, 580
Cfr10I	RCCGGY	1 cut(s)	514
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	293, 824
CviAII	CATG	4 cut(s)	50, 164, 491, 744
CviJI	RGCY	9 cut(s)	7, 54, 89, 230, 375, 568, 594, 600, 696
CviKI_1	RGCY	9 cut(s)	7, 54, 89, 230, 375, 568, 594, 600, 696
CviQI	GTAC	2 cut(s)	293, 824
DdeI	CTNAG	4 cut(s)	154, 332, 540, 650
DpnI	GATC	6 cut(s)	22, 210, 555, 672, 847, 860
DpnII	GATC	6 cut(s)	20, 208, 553, 670, 845, 858
DrdI	GACNNNNNNGTC	2 cut(s)	660, 785
DseDI	GACNNNNNNGTC	2 cut(s)	660, 785
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	659
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	54, 714
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	4 cut(s)	53, 167, 494, 747
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FatI	CATG	4 cut(s)	49, 163, 490, 743
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	320, 692
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	4 cut(s)	473, 597, 707, 734
GlaI	GCGC	2 cut(s)	122, 579
GluI	GCNGC	1 cut(s)	261
HaeII	RGCGCY	2 cut(s)	124, 581
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	515
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	2 cut(s)	123, 580
Hin1II	CATG	4 cut(s)	53, 167, 494, 747
Hin6I	GCGC	2 cut(s)	121, 578
HinP1I	GCGC	2 cut(s)	121, 578
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	102, 415, 658
HpaII	CCGG	1 cut(s)	515
HphI	GGTGA	2 cut(s)	479, 827
Hpy166II	GTNNAC	2 cut(s)	316, 665
Hpy188I	TCNGA	5 cut(s)	20, 44, 243, 466, 531
Hpy188III	TCNNGA	6 cut(s)	305, 473, 677, 685, 707, 734
Hpy8I	GTNNAC	2 cut(s)	316, 665
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	166, 362, 790
HpyCH4III	ACNGT	4 cut(s)	31, 128, 573, 832
HpyCH4V	TGCA	4 cut(s)	494, 643, 726, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 257
HpyF3I	CTNAG	4 cut(s)	154, 332, 540, 650
Hsp92II	CATG	4 cut(s)	53, 167, 494, 747
HspAI	GCGC	2 cut(s)	121, 578
Kzo9I	GATC	6 cut(s)	20, 208, 553, 670, 845, 858
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	3 cut(s)	457, 625, 735
MaeI	CTAG	4 cut(s)	473, 597, 707, 734
MaeIII	GTNAC	3 cut(s)	181, 385, 485
MalI	GATC	6 cut(s)	22, 210, 555, 672, 847, 860
MboI	GATC	6 cut(s)	20, 208, 553, 670, 845, 858
MboII	GAAGA	5 cut(s)	179, 235, 665, 775, 788
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	3 cut(s)	20, 553, 670
MluCI	AATT	5 cut(s)	234, 378, 434, 501, 783
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	22, 435
MnlI	CCTC	4 cut(s)	436, 606, 611, 845
MseI	TTAA	4 cut(s)	96, 237, 756, 855
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	515
MspR9I	CCNGG	2 cut(s)	56, 716
MunI	CAATTG	1 cut(s)	783
MvaI	CCWGG	2 cut(s)	56, 716
MwoI	GCNNNNNNNGC	2 cut(s)	66, 257
NdeII	GATC	6 cut(s)	20, 208, 553, 670, 845, 858
NlaIII	CATG	4 cut(s)	53, 167, 494, 747
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	747
PfeI	GAWTC	2 cut(s)	415, 658
PflMI	CCANNNNNTGG	1 cut(s)	496
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PshBI	ATTAAT	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	54, 714
PspGI	CCWGG	2 cut(s)	54, 714
PspN4I	GGNNCC	1 cut(s)	22
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PsuI	RGATCY	3 cut(s)	20, 553, 670
RsaI	GTAC	2 cut(s)	294, 825
RsaNI	GTAC	2 cut(s)	293, 824
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	4 cut(s)	96, 237, 756, 855
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	6 cut(s)	20, 208, 553, 670, 845, 858
ScaI	AGTACT	2 cut(s)	294, 825
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	56, 716
SetI	ASST	5 cut(s)	9, 447, 527, 627, 698
SfaNI	GCATC	3 cut(s)	457, 625, 735
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	5 cut(s)	234, 378, 434, 501, 783
SsiI	CCGC	2 cut(s)	60, 249
SspMI	CTAG	4 cut(s)	473, 597, 707, 734
StyD4I	CCNGG	2 cut(s)	54, 714
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	31, 128, 573, 832
TaqI	TCGA	1 cut(s)	413
TasI	AATT	5 cut(s)	234, 378, 434, 501, 783
TatI	WGTACW	2 cut(s)	292, 823
TfiI	GAWTC	2 cut(s)	415, 658
Tru1I	TTAA	4 cut(s)	96, 237, 756, 855
Tru9I	TTAA	4 cut(s)	96, 237, 756, 855
TscAI	CASTG	3 cut(s)	211, 501, 868
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	5 cut(s)	17, 38, 121, 381, 776
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	211, 501, 868
Van91I	CCANNNNNTGG	1 cut(s)	496
VspI	ATTAAT	1 cut(s)	237
XagI	CCTNNNNNAGG	1 cut(s)	83
XbaI	TCTAGA	3 cut(s)	472, 706, 733
XceI	RCATGY	1 cut(s)	747
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XspI	CTAG	4 cut(s)	473, 597, 707, 734
ZrmI	AGTACT	2 cut(s)	294, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.