Rh4DG427200

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
63280681 .. 63285928
5248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG427200.1

Sequence Viewer

Length: 2832 bp
ATGGCCAAAGTAGGTGGCAAAGCTGGTTTTGTTGTCAACAGCAGCAACGAAGCAGAGAGGATTCAATCTCTAGTCGAAACGGTTTTGGCTGAAATAAACAAAATCCCGGTGGGTCTTGCAGCATACACAGATGATACGGGGACAAGATGTATACAAGGGATAGTCCTAGAGGACCTAGACACTGAAAGGAAAATGAATTTGCCAAGGGATCTAACCGGTGACAAAATTTCTTGGAACAATTTTAAAAATAGCCCCAATCTTACCTCTGCAGTTACATATGTAAGGGAAAGATACAAAGCATATCTTCAAAATCAAGCAGAGAAAAAGAGTTGGGTTACACTTCGCTCTAAACCCTTTGGAGCTATGGTCAATCTTAGACTGCTTCAGATGAATTATGTGAATTTGGAAGGGAGATTTGAATTTCTTCCTTCTGAATTGAAGTGGTTACAATGGAAAGGTTGTCCTTTGAAATCTCTTCCTTCTGTTCTTTTCCTTCGGCGACTTGCTGGCCTTGATCTTTCATACAGCAAAGTTGAAAGATTGTGTAGTGGTAACACGAATAAGGTGGCTGAGAAATTGATGTTCCTGAATCTAAGCGGCTGCAGTTTCCTCACTACTATTCCTGATTTATCTGGGAATCATGCCTTGGAAAAGCTTATTCTTAAGAATTGCGTTGGACTGATCAAGCTCCATGATTCGATTGGGAATTTGAATACATTAGTCCACTTGAACTTGCAAGACTGTGAAAACCTCGTTGAACTTCCAAGTGATGTCTCTGGCCTGAGAAAACTTGAGAACCTAATCCTCTCTGGTTGCTCAAAATTGAAAAGACTGCCAAAAAACATCGAAACCTTGGTATCACTGAAAGAACTTCTCCTTGATAAAACTGCTATTGAAAGTCTTCCCGAAGCTATATTCCATCTTACAAAACTTGAAAAGCTCAGCTTGAACCGATGCAGAGTTTTGAAAGGGCTACCTGAGGAGATTGGTAAGCTGTGTTCTTTGAAAGAAATCTCCCTTAATGGATCTGGTTTGGAAAAACTACCTGATTCCATTGGCTCTTTGGCAAACCTTGAGATACTAAGTTTGTTCTGGTGTGAGTCACTGACTACTATTCCTAACTCCCTTGGTGACCTTAATAACTTGATGGAATTTTTTACTTACGGTACTCCAATTGAAGAACTGCCATTGAGTTTTGGTTCATTATCAAACTTGAAGGAATTATCAGTGGGACGTGGTCAATTTCTGCGAACACTACCAGATTCCATTGGAGGACTGAAATCATTGGTTGTGTTAAAGATAGATGAGACATCAATCACAGGTCTTCCACAAGAGATAAGTGCCTTGAAAACACTTGAGAAACTTGAGCTGAGGAAATGTGAATCTCTTGGATCATTACCAGAGTCAATTGGAAGCATGTGGGCACTAACTTCTATAATCATAACTGCAGCAAATATCACCGAGTTGCCTGAATCCATAGGGAGGCTGGAAAATCTTACCATGTTACGGTTGAACACATGTAAACAGTTCCGCAAGCTTCCAGCATCAATAGGACAGTTAAAATCCTTGCACCGATTGCAGATGGTGGAAACTGCAGTGACAGAACTACCTGAAAGCTTCGGAATGCTGTCTAATTTGATGGTTTTGAGCATGGGAAAGAAGCCTCAAAATGGGAGACATACAGAAGAGAAGTTTATACTTCCAGCTTCCTTCTCAAATCTGTCCCTGCTGTACGAACTGGATGCCCGTGCTTGTAATATATCTGGTGAAATTGCTGATGATTTCGAGAAGTTGTCATCACTAGAAACTTTGAATCTTGGCCGTAATAGTTTCTGCCGCCTTCCAGCCAGCCTGAGTGGTCTGTCCACTCTCGGAAAACTTTCATTGCCTCACTGTAAGAAGCTCAAGTCTTTGCCTCCACTTCCCTCAAGTTTGAAACAGGTAGATGTTGCAAACTGTGTTGCATTAGAAAATATATCTGATGTTTCAAACCTGGAGAACTTGACAGATTTCAACCTTACAAATTGTGAGAAAGTGTTGGATATTCCCGGTATTGAATGCTTGGATTCCTTGACAAGGCTGTTTATGAGTGGCTGCAACAGTTGCTCATCAGCAGTCAAGAAAAGACTAGCAAAAAAGAGTTACCCAAGGAGAATACGGACTCTTAGCATTCCTGGAAGCAAGATACCAGACTGGTTTTCTCAAGATGTGATTACATTCTCAGAACGGAAAAACCATGTTCTCAAAGATGTGATTATAGCTGTTGTAGTTTCTCTCAACCATCAAATACCAGATGACCTACGAGAAGAGCTCCCAGCTGTGGTAGATATTGTAGCAAAGATCCTCATACTGGATTCTCCTACCTTCACTTCAACGTTGGTCTTATCAGGAGTACCAAATACAAATGAAGATCAATTTTTCTTGTGCCGGTATCCAATTTCTCATCCTTTGGTATTTCAACTGAAAGATGGTTATAAGATACATGTAGAGAGGAGAGAGCCGCCGTATGTGAAAGGAGTGGAGCTGAAGAAGTGGGGGATTCATTTGGTGTATGAAGGTGATGATGATTACGAGGGGGACGAAGAGTCATTGAAGGAAAGCCAGCAGTCCCTTTCAGAAAAATTGGCCAAGTTCTTTGGCTCCTTTGATGAAGAAGCTGACTCCACCTCCATTGTTGAACAAGTAGATTGCACCCCTGAATCTAGTCATAATGAAGATGAAGGAATGGCACAAGAGATGAGAGAAAGTGACCGCGGTTACTTCATTTCTTTCTTCCTAAAGCTCTTGTCTTTCTGTGGTTCAGTTGGTTGTGTTTCGGGGTCTGAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

943

Amino Acids

104.67

Weight (kDa)

5.78

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 206 - 314 5.3e-08 Leucine-rich repeat region
LRR_14 PF23598 274 - 340 5.4e-09 Leucine-rich repeat region
LRR_14 PF23598 323 - 384 3.5e-07 Leucine-rich repeat region
LRR_14 PF23598 389 - 460 3.7e-08 Leucine-rich repeat region
LRR_14 PF23598 509 - 584 6.8e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2475
AccI GTMKAC 1 cut(s) 151
AccII CGCG 1 cut(s) 2754
AciI CCGC 6 cut(s) 597, 1531, 1837, 2501, 2752, 2754
AclI AACGTT 1 cut(s) 2375
AclWI GGATC 4 cut(s) 216, 1033, 1399, 2335
AcoI YGGCCR 3 cut(s) 3, 1819, 2625
AcsI RAATTY 6 cut(s) 196, 225, 400, 419, 706, 1151
AcuI CTGAAG 2 cut(s) 368, 2546
AfaI GTAC 3 cut(s) 1168, 1733, 2394
AfiI CCNNNNNNNGG 6 cut(s) 1482, 1506, 1670, 2076, 2320, 2350
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 2 cut(s) 1517, 2482
AgeI ACCGGT 1 cut(s) 215
AhdI GACNNNNNGTC 1 cut(s) 2584
AjiI CACGTC 1 cut(s) 1235
AjnI CCWGG 2 cut(s) 1992, 2173
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
Alw21I GWGCWC 1 cut(s) 2313
Alw26I GTCTC 3 cut(s) 778, 1301, 1669
AlwI GGATC 4 cut(s) 216, 1033, 1399, 2335
AoxI GGCC 5 cut(s) 3, 508, 778, 1819, 2625
ApeKI GCWGC 5 cut(s) 42, 119, 600, 1448, 2094
ApoI RAATTY 6 cut(s) 196, 225, 400, 419, 706, 1151
AsiGI ACCGGT 1 cut(s) 215
Asp700I GAANNNNTTC 3 cut(s) 423, 900, 1879
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 2 cut(s) 107, 2049
AsuHPI GGTGA 5 cut(s) 230, 1142, 1450, 1778, 2570
AvaII GGWCC 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 978
BaeGI GKGCMC 1 cut(s) 1426
BaeI ACNNNNGTAYC 2 cut(s) 840, 873
BalI TGGCCA 2 cut(s) 5, 2627
BanII GRGCYC 1 cut(s) 2313
BbsI GAAGAC 2 cut(s) 893, 1316
Bbv12I GWGCWC 1 cut(s) 2313
BbvCI CCTCAGC 1 cut(s) 1370
BbvI GCAGC 5 cut(s) 54, 131, 587, 1460, 2081
BccI CCATC 6 cut(s) 927, 1141, 1576, 1633, 2289, 2462
BceAI ACGGC 2 cut(s) 1806, 2488
BcgI CGANNNNNNTGC 2 cut(s) 1724, 1758
BciT130I CCWGG 2 cut(s) 1994, 2175
BciVI GTATCC 1 cut(s) 2442
BclI TGATCA 1 cut(s) 681
BcnI CCSGG 2 cut(s) 107, 2049
BcoDI GTCTC 3 cut(s) 778, 1301, 1669
BfaI CTAG 6 cut(s) 71, 167, 176, 1802, 2129, 2703
BfmI CTRYAG 4 cut(s) 267, 601, 1446, 1593
BfrI CTTAAG 1 cut(s) 662
BfuI GTATCC 1 cut(s) 2442
BisI GCNGC 8 cut(s) 43, 120, 598, 601, 1449, 1837, 2095, 2501
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 8 cut(s) 44, 121, 599, 602, 1450, 1838, 2096, 2502
Bme1390I CCNGG 4 cut(s) 107, 1994, 2049, 2175
Bme18I GGWCC 1 cut(s) 172
BmeRI GACNNNNNGTC 1 cut(s) 2584
BmgBI CACGTC 1 cut(s) 1235
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 2641
BmrFI CCNGG 4 cut(s) 107, 1994, 2049, 2175
BmsI GCATC 3 cut(s) 944, 1553, 1732
BpiI GAAGAC 2 cut(s) 893, 1316
BplI GAGNNNNNCTC 2 cut(s) 2295, 2327
BpmI CTGGAG 1 cut(s) 2015
Bpu10I CCTNAGC 1 cut(s) 1370
Bpu1102I GCTNAGC 1 cut(s) 941
BpuEI CTTGAG 7 cut(s) 812, 1094, 1376, 1385, 1889, 1912, 2187
BpuMI CCSGG 2 cut(s) 107, 2049
BsaJI CCNNGG 6 cut(s) 203, 645, 852, 1126, 2147, 2752
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 2651, 2681
Bsc4I CCNNNNNNNGG 6 cut(s) 1482, 1506, 1670, 2076, 2320, 2350
Bse118I RCCGGY 2 cut(s) 215, 2427
Bse1I ACTGG 3 cut(s) 1743, 2198, 2355
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 1 cut(s) 1883
BseBI CCWGG 2 cut(s) 1994, 2175
BseDI CCNNGG 6 cut(s) 203, 645, 852, 1126, 2147, 2752
BseGI GGATG 2 cut(s) 1747, 2443
BseLI CCNNNNNNNGG 6 cut(s) 1482, 1506, 1670, 2076, 2320, 2350
BseMI GCAATG 1 cut(s) 1883
BseMII CTCAG 7 cut(s) 561, 773, 955, 969, 1361, 1844, 2235
BseNI ACTGG 3 cut(s) 1743, 2198, 2355
BseRI GAGGAG 2 cut(s) 995, 2506
BseSI GKGCMC 1 cut(s) 1426
BseXI GCAGC 5 cut(s) 54, 131, 587, 1460, 2081
BseYI CCCAGC 1 cut(s) 2314
Bsh1236I CGCG 1 cut(s) 2754
BshFI GGCC 5 cut(s) 5, 510, 780, 1821, 2627
BshTI ACCGGT 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 2313
BsiSI CCGG 4 cut(s) 107, 216, 2049, 2428
BslFI GGGAC 5 cut(s) 154, 1245, 1708, 2591, 2593
BslI CCNNNNNNNGG 6 cut(s) 1482, 1506, 1670, 2076, 2320, 2350
BsmAI GTCTC 3 cut(s) 778, 1301, 1669
BsmFI GGGAC 5 cut(s) 154, 1245, 1708, 2591, 2593
BsmI GAATGC 3 cut(s) 1629, 2063, 2169
BsnI GGCC 5 cut(s) 5, 510, 780, 1821, 2627
Bsp1286I GDGCHC 2 cut(s) 1426, 2313
Bsp143I GATC 7 cut(s) 208, 514, 681, 1025, 1391, 2340, 2410
Bsp1720I GCTNAGC 1 cut(s) 941
BspACI CCGC 6 cut(s) 597, 1531, 1837, 2501, 2752, 2754
BspANI GGCC 5 cut(s) 5, 510, 780, 1821, 2627
BspCNI CTCAG 7 cut(s) 562, 774, 954, 970, 1362, 1845, 2234
BspFNI CGCG 1 cut(s) 2754
BspLI GGNNCC 1 cut(s) 2641
BspMAI CTGCAG 4 cut(s) 271, 605, 1450, 1597
BspPI GGATC 4 cut(s) 216, 1033, 1399, 2335
BspQI GCTCTTC 1 cut(s) 2301
BspTI CTTAAG 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 1883
BsrFI RCCGGY 2 cut(s) 215, 2427
BsrI ACTGG 3 cut(s) 1743, 2198, 2355
BssAI RCCGGY 2 cut(s) 215, 2427
BssECI CCNNGG 6 cut(s) 203, 645, 852, 1126, 2147, 2752
BssMI GATC 7 cut(s) 208, 514, 681, 1025, 1391, 2340, 2410
BssNAI GTATAC 1 cut(s) 152
BssT1I CCWWGG 5 cut(s) 203, 645, 852, 1126, 2147
Bst1107I GTATAC 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 1994, 2175
Bst4CI ACNGT 9 cut(s) 82, 743, 1166, 1509, 1527, 1557, 1895, 1958, 2102
Bst6I CTCTTC 4 cut(s) 480, 1680, 2301, 2577
BstAFI CTTAAG 1 cut(s) 662
BstAPI GCANNNNNTGC 2 cut(s) 1576, 2103
BstC8I GCNNGC 4 cut(s) 508, 1535, 1849, 2603
BstDSI CCRYGG 1 cut(s) 2752
BstEII GGTNACC 1 cut(s) 1130
BstENI CCTNNNNNAGG 1 cut(s) 2074
BstF5I GGATG 2 cut(s) 1747, 2443
BstFNI CGCG 1 cut(s) 2754
BstKTI GATC 7 cut(s) 211, 517, 684, 1028, 1394, 2343, 2413
BstMAI GTCTC 3 cut(s) 778, 1301, 1669
BstMBI GATC 7 cut(s) 208, 514, 681, 1025, 1391, 2340, 2410
BstMWI GCNNNNNNNGC 2 cut(s) 1576, 2103
BstNI CCWGG 2 cut(s) 1994, 2175
BstNSI RCATGY 3 cut(s) 1420, 1521, 2486
BstPI GGTNACC 1 cut(s) 1130
BstSCI CCNGG 4 cut(s) 105, 1992, 2047, 2173
BstSFI CTRYAG 4 cut(s) 267, 601, 1446, 1593
BstSLI GKGCMC 1 cut(s) 1426
BstUI CGCG 1 cut(s) 2754
BstV1I GCAGC 5 cut(s) 54, 131, 587, 1460, 2081
BstV2I GAAGAC 2 cut(s) 893, 1316
BstX2I RGATCY 3 cut(s) 208, 1025, 2340
BstYI RGATCY 3 cut(s) 208, 1025, 2340
BstZ17I GTATAC 1 cut(s) 152
Bsu36I CCTNAGG 1 cut(s) 978
BsuI GTATCC 1 cut(s) 2442
BsuRI GGCC 5 cut(s) 5, 510, 780, 1821, 2627
BtgI CCRYGG 1 cut(s) 2752
BtrI CACGTC 1 cut(s) 1235
BtsCI GGATG 2 cut(s) 1747, 2443
BtsI GCAGTG 1 cut(s) 1602
BtsIMutI CAGTG 6 cut(s) 180, 860, 1103, 1233, 1602, 1891
Cac8I GCNNGC 4 cut(s) 508, 1535, 1849, 2603
Cfr10I RCCGGY 2 cut(s) 215, 2427
Cfr13I GGNCC 1 cut(s) 172
Cfr42I CCGCGG 1 cut(s) 2755
Csp6I GTAC 3 cut(s) 1167, 1732, 2393
CspAI ACCGGT 1 cut(s) 215
CspCI CAANNNNNGTGG 3 cut(s) 30, 2653, 2688
CviAII CATG 9 cut(s) 641, 692, 1417, 1501, 1518, 1651, 2237, 2483, 2829
CviQI GTAC 3 cut(s) 1167, 1732, 2393
DpnI GATC 7 cut(s) 210, 516, 683, 1027, 1393, 2342, 2412
DpnII GATC 7 cut(s) 208, 514, 681, 1025, 1391, 2340, 2410
DraI TTTAAA 1 cut(s) 244
DriI GACNNNNNGTC 1 cut(s) 2584
EaeI YGGCCR 3 cut(s) 3, 1819, 2625
Eam1104I CTCTTC 4 cut(s) 480, 1680, 2301, 2577
Eam1105I GACNNNNNGTC 1 cut(s) 2584
EarI CTCTTC 4 cut(s) 480, 1680, 2301, 2577
Ecl136II GAGCTC 1 cut(s) 2311
Eco130I CCWWGG 5 cut(s) 203, 645, 852, 1126, 2147
Eco24I GRGCYC 1 cut(s) 2313
Eco47I GGWCC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 2311
Eco57I CTGAAG 2 cut(s) 368, 2546
Eco81I CCTNAGG 1 cut(s) 978
Eco91I GGTNACC 1 cut(s) 1130
EcoICRI GAGCTC 1 cut(s) 2311
EcoNI CCTNNNNNAGG 1 cut(s) 2074
EcoO109I RGGNCCY 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 1130
EcoRII CCWGG 2 cut(s) 1992, 2173
EcoT14I CCWWGG 5 cut(s) 203, 645, 852, 1126, 2147
EcoT38I GRGCYC 1 cut(s) 2313
ErhI CCWWGG 5 cut(s) 203, 645, 852, 1126, 2147
FaeI CATG 9 cut(s) 644, 695, 1420, 1504, 1521, 1654, 2240, 2486, 2832
FalI AAGNNNNNCTT 4 cut(s) 288, 320, 929, 961
FaqI GGGAC 5 cut(s) 154, 1245, 1708, 2591, 2593
FatI CATG 9 cut(s) 640, 691, 1416, 1500, 1517, 1650, 2236, 2482, 2828
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 681
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 8 cut(s) 43, 120, 598, 601, 1449, 1837, 2095, 2501
FokI GGATG 2 cut(s) 1754, 2430
FriOI GRGCYC 1 cut(s) 2313
Fsp4HI GCNGC 8 cut(s) 43, 120, 598, 601, 1449, 1837, 2095, 2501
FspBI CTAG 6 cut(s) 71, 167, 176, 1802, 2129, 2703
GluI GCNGC 8 cut(s) 43, 120, 598, 601, 1449, 1837, 2095, 2501
GsaI CCCAGC 1 cut(s) 2318
GsuI CTGGAG 1 cut(s) 2015
HaeIII GGCC 5 cut(s) 5, 510, 780, 1821, 2627
HapII CCGG 4 cut(s) 107, 216, 2049, 2428
Hin1II CATG 9 cut(s) 644, 695, 1420, 1504, 1521, 1654, 2240, 2486, 2832
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 3 cut(s) 653, 1535, 1615
HpaII CCGG 4 cut(s) 107, 216, 2049, 2428
HphI GGTGA 5 cut(s) 230, 1142, 1450, 1778, 2570
Hpy166II GTNNAC 5 cut(s) 37, 152, 724, 1523, 1866
Hpy188I TCNGA 8 cut(s) 387, 433, 1622, 1874, 1981, 2224, 2617, 2824
Hpy188III TCNNGA 7 cut(s) 586, 623, 905, 1786, 2119, 2204, 2388
Hpy8I GTNNAC 5 cut(s) 37, 152, 724, 1523, 1866
HpyCH4III ACNGT 9 cut(s) 82, 743, 1166, 1509, 1527, 1557, 1895, 1958, 2102
HpyCH4IV ACGT 2 cut(s) 1234, 2375
HpyF10VI GCNNNNNNNGC 2 cut(s) 1576, 2103
HpySE526I ACGT 2 cut(s) 1234, 2375
Hsp92II CATG 9 cut(s) 644, 695, 1420, 1504, 1521, 1654, 2240, 2486, 2832
Ksp22I TGATCA 1 cut(s) 681
KspI CCGCGG 1 cut(s) 2755
Kzo9I GATC 7 cut(s) 208, 514, 681, 1025, 1391, 2340, 2410
LguI GCTCTTC 1 cut(s) 2301
LmnI GCTCC 5 cut(s) 359, 693, 2316, 2521, 2645
Lsp1109I GCAGC 5 cut(s) 54, 131, 587, 1460, 2081
LweI GCATC 3 cut(s) 944, 1553, 1732
MaeI CTAG 6 cut(s) 71, 167, 176, 1802, 2129, 2703
MaeII ACGT 2 cut(s) 1234, 2375
MalI GATC 7 cut(s) 210, 516, 683, 1027, 1393, 2342, 2412
MboI GATC 7 cut(s) 208, 514, 681, 1025, 1391, 2340, 2410
MfeI CAATTG 2 cut(s) 1173, 1407
MflI RGATCY 3 cut(s) 208, 1025, 2340
MhlI GDGCHC 2 cut(s) 1426, 2313
MlsI TGGCCA 2 cut(s) 5, 2627
MluNI TGGCCA 2 cut(s) 5, 2627
MlyI GAGTC 5 cut(s) 1109, 1412, 2155, 2594, 2654
MmeI TCCRAC 2 cut(s) 655, 2019
Mox20I TGGCCA 2 cut(s) 5, 2627
MroXI GAANNNNTTC 3 cut(s) 423, 900, 1879
MscI TGGCCA 2 cut(s) 5, 2627
MseI TTAA 6 cut(s) 243, 663, 1020, 1137, 1295, 1559
Msp20I TGGCCA 2 cut(s) 5, 2627
MspA1I CMGCKG 2 cut(s) 2318, 2754
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 4 cut(s) 107, 216, 2049, 2428
MspR9I CCNGG 4 cut(s) 107, 1994, 2049, 2175
MunI CAATTG 2 cut(s) 1173, 1407
Mva1269I GAATGC 3 cut(s) 1629, 2063, 2169
MvaI CCWGG 2 cut(s) 1994, 2175
MvnI CGCG 1 cut(s) 2754
MwoI GCNNNNNNNGC 2 cut(s) 1576, 2103
NciI CCSGG 2 cut(s) 107, 2049
NdeI CATATG 1 cut(s) 277
NdeII GATC 7 cut(s) 208, 514, 681, 1025, 1391, 2340, 2410
NlaIII CATG 9 cut(s) 644, 695, 1420, 1504, 1521, 1654, 2240, 2486, 2832
NlaIV GGNNCC 1 cut(s) 2641
NmuCI GTSAC 5 cut(s) 218, 1101, 1130, 1597, 2747
NspI RCATGY 3 cut(s) 1420, 1521, 2486
PciI ACATGT 2 cut(s) 1517, 2482
PciSI GCTCTTC 1 cut(s) 2301
PcsI WCGNNNNNNNCGW 1 cut(s) 2577
PctI GAATGC 3 cut(s) 1629, 2063, 2169
PdmI GAANNNNTTC 3 cut(s) 423, 900, 1879
PflFI GACNNNGTC 1 cut(s) 1236
PfoI TCCNGGA 1 cut(s) 2173
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 8 cut(s) 44, 121, 599, 602, 1450, 1838, 2096, 2502
PleI GAGTC 5 cut(s) 1108, 1411, 2155, 2593, 2654
PpsI GAGTC 5 cut(s) 1108, 1411, 2155, 2593, 2654
PpuMI RGGWCCY 1 cut(s) 172
PscI ACATGT 2 cut(s) 1517, 2482
PsiI TTATAA 1 cut(s) 2475
Psp124BI GAGCTC 1 cut(s) 2313
Psp1406I AACGTT 1 cut(s) 2375
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 1992, 2173
PspEI GGTNACC 1 cut(s) 1130
PspFI CCCAGC 1 cut(s) 2314
PspGI CCWGG 2 cut(s) 1992, 2173
PspN4I GGNNCC 1 cut(s) 2641
PspPI GGNCC 1 cut(s) 172
PspPPI RGGWCCY 1 cut(s) 172
PsrI GAACNNNNNNTAC 2 cut(s) 982, 1014
PstI CTGCAG 4 cut(s) 271, 605, 1450, 1597
PsuI RGATCY 3 cut(s) 208, 1025, 2340
PsyI GACNNNGTC 1 cut(s) 1236
PvuII CAGCTG 1 cut(s) 2318
RsaI GTAC 3 cut(s) 1168, 1733, 2394
RsaNI GTAC 3 cut(s) 1167, 1732, 2393
SacI GAGCTC 1 cut(s) 2313
SacII CCGCGG 1 cut(s) 2755
SapI GCTCTTC 1 cut(s) 2301
SaqAI TTAA 6 cut(s) 243, 663, 1020, 1137, 1295, 1559
SatI GCNGC 8 cut(s) 43, 120, 598, 601, 1449, 1837, 2095, 2501
Sau3AI GATC 7 cut(s) 208, 514, 681, 1025, 1391, 2340, 2410
Sau96I GGNCC 1 cut(s) 172
SchI GAGTC 5 cut(s) 1109, 1412, 2155, 2594, 2654
ScrFI CCNGG 4 cut(s) 107, 1994, 2049, 2175
SduI GDGCHC 2 cut(s) 1426, 2313
SfaNI GCATC 3 cut(s) 944, 1553, 1732
SfcI CTRYAG 4 cut(s) 267, 601, 1446, 1593
Sfr303I CCGCGG 1 cut(s) 2755
SgrBI CCGCGG 1 cut(s) 2755
SinI GGWCC 1 cut(s) 172
SmlI CTYRAG 8 cut(s) 662, 791, 1073, 1355, 1364, 1904, 1927, 2202
SmoI CTYRAG 8 cut(s) 662, 791, 1073, 1355, 1364, 1904, 1927, 2202
SsiI CCGC 6 cut(s) 597, 1531, 1837, 2501, 2752, 2754
SspMI CTAG 6 cut(s) 71, 167, 176, 1802, 2129, 2703
SstI GAGCTC 1 cut(s) 2313
StyD4I CCNGG 4 cut(s) 105, 1992, 2047, 2173
StyI CCWWGG 5 cut(s) 203, 645, 852, 1126, 2147
TaaI ACNGT 9 cut(s) 82, 743, 1166, 1509, 1527, 1557, 1895, 1958, 2102
TaiI ACGT 2 cut(s) 1237, 2378
TaqI TCGA 4 cut(s) 75, 698, 846, 1785
TauI GCSGC 3 cut(s) 600, 1839, 2503
Tru1I TTAA 6 cut(s) 243, 663, 1020, 1137, 1295, 1559
Tru9I TTAA 6 cut(s) 243, 663, 1020, 1137, 1295, 1559
TscAI CASTG 6 cut(s) 187, 867, 1110, 1233, 1602, 1898
TseFI GTSAC 5 cut(s) 218, 1101, 1130, 1597, 2747
TseI GCWGC 5 cut(s) 42, 119, 600, 1448, 2094
Tsp45I GTSAC 5 cut(s) 218, 1101, 1130, 1597, 2747
TspGWI ACGGA 2 cut(s) 2173, 2242
TspRI CASTG 6 cut(s) 187, 867, 1110, 1233, 1602, 1898
Tth111I GACNNNGTC 1 cut(s) 1236
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 172
XagI CCTNNNNNAGG 1 cut(s) 2074
XapI RAATTY 6 cut(s) 196, 225, 400, 419, 706, 1151
XceI RCATGY 3 cut(s) 1420, 1521, 2486
XcmI CCANNNNNNNNNTGG 3 cut(s) 698, 1060, 1483
XmiI GTMKAC 1 cut(s) 151
XmnI GAANNNNTTC 3 cut(s) 423, 900, 1879
XspI CTAG 6 cut(s) 71, 167, 176, 1802, 2129, 2703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.