FvH4_5g01450

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002251
Physical Location & Seq
Forward (+)
902242 .. 902786
545 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01450.t1

Sequence Viewer

Length: 435 bp
ATGGGTGCCGAACAACCCGTGGTGGAGAGAGAGAGTGAAGAGCTAGAGGCGAGGGAGAGAGATGAGACGGAGGAAAAGAAAGATGCTGAGAAGAAAGGTGAGGTGGGTTTTGAGCAGCAGCAACAACAACAGAGTCAGAGAGATGATGTTCGTATGTCAATGTTGCAGAGGCTTAACCCTACAAACCCTTTGAGGATTGCTATTAATCCTAAAACCAGAAGCGCTGCTCCTCCTCCTCCCATGAGGTTCCAACAGACCCATAATGTCAGAGACTCAGAGTTCCTACTGCTACTCCTTCTCCATCTCCTTCTGACTTGTCTCGTCAGAAGGAGAGTGGGACATGGAGAGCTTGGGTTTGGTTTGATCGGAAATCTACACTACTTCCGGTTTCTGGCTTTTTCTTGTTTTCGGCAATGTCCACCTCATCAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

145

Amino Acids

16.75

Weight (kDa)

6.97

Isoelectric Point (pI)

66.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 391
AluBI AGCT 2 cut(s) 43, 349
AluI AGCT 2 cut(s) 43, 349
Alw26I GTCTC 3 cut(s) 59, 264, 323
Aor51HI AGCGCT 1 cut(s) 223
ApeKI GCWGC 3 cut(s) 115, 118, 224
AseI ATTAAT 1 cut(s) 204
AspLEI GCGC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 110
BanI GGYRCC 1 cut(s) 5
BbvI GCAGC 3 cut(s) 127, 130, 211
BccI CCATC 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 59, 264, 323
BfaI CTAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 3 cut(s) 116, 119, 225
BlsI GCNGC 3 cut(s) 117, 120, 226
BmiI GGNNCC 2 cut(s) 7, 248
BmsI GCATC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 4 cut(s) 276, 282, 306, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse3DI GCAATG 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMI GCAATG 1 cut(s) 419
BseMII CTCAG 2 cut(s) 78, 288
BseRI GAGGAG 3 cut(s) 219, 222, 225
BseXI GCAGC 3 cut(s) 127, 130, 211
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 385
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 3 cut(s) 59, 264, 323
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 363
BspCNI CTCAG 2 cut(s) 79, 287
BspLI GGNNCC 2 cut(s) 7, 248
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 87, 274
BstDSI CCRYGG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 366
BstMAI GTCTC 3 cut(s) 59, 264, 323
BstMBI GATC 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 127, 130, 211
BtgI CCRYGG 1 cut(s) 18
CfoI GCGC 1 cut(s) 224
CviAII CATG 2 cut(s) 241, 341
CviJI RGCY 4 cut(s) 43, 172, 349, 395
CviKI_1 RGCY 4 cut(s) 43, 172, 349, 395
DdeI CTNAG 2 cut(s) 87, 274
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco47III AGCGCT 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 59
FaeI CATG 2 cut(s) 244, 344
FaiI YATR 4 cut(s) 155, 242, 261, 342
FaqI GGGAC 1 cut(s) 351
FatI CATG 2 cut(s) 240, 340
Fnu4HI GCNGC 3 cut(s) 116, 119, 225
Fsp4HI GCNGC 3 cut(s) 116, 119, 225
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 223
GluI GCNGC 3 cut(s) 116, 119, 225
HaeII RGCGCY 1 cut(s) 225
HapII CCGG 1 cut(s) 385
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 244, 344
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 2 cut(s) 133, 272
HpaII CCGG 1 cut(s) 385
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 6 cut(s) 138, 269, 277, 312, 326, 368
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 305, 317, 321
HpyCH4V TGCA 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 87, 274
Hsp92II CATG 2 cut(s) 244, 344
HspAI GCGC 1 cut(s) 222
Kzo9I GATC 1 cut(s) 363
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 3 cut(s) 229, 377, 398
Lsp1109I GCAGC 3 cut(s) 127, 130, 211
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 44
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 2 cut(s) 50, 103
MluCI AATT 1 cut(s) 430
MlyI GAGTC 2 cut(s) 142, 266
MmeI TCCRAC 1 cut(s) 274
MseI TTAA 3 cut(s) 174, 204, 433
MspI CCGG 1 cut(s) 385
NdeII GATC 1 cut(s) 363
NlaIII CATG 2 cut(s) 244, 344
NlaIV GGNNCC 2 cut(s) 7, 248
PciSI GCTCTTC 1 cut(s) 33
PkrI GCNGC 3 cut(s) 117, 120, 226
PleI GAGTC 2 cut(s) 141, 266
PpsI GAGTC 2 cut(s) 141, 266
PshBI ATTAAT 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 7, 248
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 174, 204, 433
SatI GCNGC 3 cut(s) 116, 119, 225
Sau3AI GATC 1 cut(s) 363
SchI GAGTC 2 cut(s) 142, 266
SetI ASST 6 cut(s) 45, 100, 105, 248, 351, 424
SfaNI GCATC 1 cut(s) 73
Sse9I AATT 1 cut(s) 430
SspMI CTAG 1 cut(s) 44
TasI AATT 1 cut(s) 430
Tru1I TTAA 3 cut(s) 174, 204, 433
Tru9I TTAA 3 cut(s) 174, 204, 433
TseI GCWGC 3 cut(s) 115, 118, 224
TspGWI ACGGA 1 cut(s) 83
VspI ATTAAT 1 cut(s) 204
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.