Rroxscaffold_7G00170850

Protein of unknown function (DUF707)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
11212042 .. 11213740
1699 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00170850.1

Sequence Viewer

Length: 213 bp
ATGTTTTCTTGTGCGCATTGCTTTCTCAATGTCATGCAGTGCATCTTTCGATATGGCGATGGCTGGGCCTTTGTTCAGATATATGTTCCAACAAATCCTTCCGGTGCTGAAACACTACCACCAGGAACTGTTGTTCCACAAACTGATTTGTGTATGCACATATTATGGGGTAAACCCAGTGAGGATCTAAAAACCAGCCAAAGTACTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

7.85

Weight (kDa)

5.34

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 15
AclWI GGATC 1 cut(s) 192
AfaI GTAC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 82, 114
AloI GAACNNNNNNTCC 4 cut(s) 117, 118, 149, 150
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 66
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 123
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 68
BsiSI CCGG 1 cut(s) 102
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 184
BspANI GGCC 1 cut(s) 68
BspPI GGATC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 177
BssMI GATC 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 130
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 44, 184
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 204
CviAII CATG 1 cut(s) 34
CviJI RGCY 3 cut(s) 63, 68, 198
CviKI_1 RGCY 3 cut(s) 63, 68, 198
CviQI GTAC 1 cut(s) 204
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 37
FaiI YATR 7 cut(s) 35, 54, 82, 84, 155, 161, 166
FatI CATG 1 cut(s) 33
FspAI RTGCGCAY 1 cut(s) 15
FspI TGCGCA 1 cut(s) 15
GlaI GCGC 1 cut(s) 15
GsaI CCCAGC 1 cut(s) 67
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 102
HhaI GCGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HpaII CCGG 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 78
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 37, 42, 157
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 6 cut(s) 49, 108, 115, 135, 190, 208
LweI GCATC 1 cut(s) 51
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MflI RGATCY 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 1 cut(s) 175
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 37
NsbI TGCGCA 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 66
ScaI AGTACT 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 123
SfaNI GCATC 1 cut(s) 51
SgeI CNNG 8 cut(s) 21, 46, 76, 114, 134, 135, 189, 207
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 49
TatI WGTACW 1 cut(s) 203
TscAI CASTG 2 cut(s) 44, 184
TspRI CASTG 2 cut(s) 44, 184
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.