Rh2AG206300

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002251
Physical Location & Seq
Forward (+)
20917911 .. 20920302
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG206300.1

Sequence Viewer

Length: 450 bp
ATGTGCCCTTTGAGAATTGCTATCAATGCTAAGACCATAAGTGCTGCTCCTCCTCCTCCTTATCGGTTCCAACTGGCCCAAAATGTCAGAGTTGGTACTACTCCACCTTCATCTCTATCTGAATTCTCTCAGTCTCACACAACTCCTCCTCAGCATTCTCAGCCTCGCACTATTCCAACCCCTCAGGCAGCAATTACAACACTGAACTCAAGAGCCTACACCAACAAGATATCTTTGTTCCTTTTCATTGTGCACATGGTGGCTGCTATTGGGCTATGCATCTTTCGATATGGCGATGGCTGGGCCTTTGTTCAGATATATATTCCAACAAACCCTTCTGGTGCTGAAACACTACCACCAGGAATTGTTGTTCCACAAACTGATTTGTATATGCACAGATTATGGGGTAAACCCAGTGAGGATCTAAAAACCAGCCAAAGTACTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

149

Amino Acids

16.43

Weight (kDa)

9.56

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 110 - 146 3.9e-06 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 429
AcsI RAATTY 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 2 cut(s) 97, 442
AjnI CCWGG 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 1 cut(s) 429
AoxI GGCC 2 cut(s) 75, 303
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 3 cut(s) 44, 188, 263
ApoI RAATTY 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 76, 303
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 2 cut(s) 8, 255
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 31, 200, 250
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 3 cut(s) 45, 189, 264
BlsI GCNGC 3 cut(s) 46, 190, 265
BmcAI AGTACT 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 360
BmgT120I GGNCC 2 cut(s) 76, 303
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse1I ACTGG 2 cut(s) 78, 414
Bse21I CCTNAGG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 360
BseMII CTCAG 4 cut(s) 143, 164, 173, 197
BseNI ACTGG 2 cut(s) 78, 414
BseRI GAGGAG 5 cut(s) 39, 42, 45, 135, 138
BseSI GKGCMC 2 cut(s) 8, 255
BseXI GCAGC 3 cut(s) 31, 200, 250
BseYI CCCAGC 1 cut(s) 300
BshFI GGCC 2 cut(s) 77, 305
BsiHKAI GWGCWC 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 2 cut(s) 77, 305
Bsp1286I GDGCHC 2 cut(s) 8, 255
Bsp143I GATC 1 cut(s) 421
BspANI GGCC 2 cut(s) 77, 305
BspCNI CTCAG 4 cut(s) 142, 163, 172, 196
BspLI GGNNCC 1 cut(s) 68
BspPI GGATC 1 cut(s) 429
BsrI ACTGG 2 cut(s) 78, 414
BssMI GATC 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 360
BstDEI CTNAG 5 cut(s) 30, 129, 150, 159, 183
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 2 cut(s) 26, 160
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstSLI GKGCMC 2 cut(s) 8, 255
BstV1I GCAGC 3 cut(s) 31, 200, 250
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 77, 305
BtgZI GCGATG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 200, 421
Cfr13I GGNCC 2 cut(s) 76, 303
Csp6I GTAC 2 cut(s) 96, 441
CviAII CATG 1 cut(s) 256
CviJI RGCY 8 cut(s) 77, 163, 215, 263, 274, 300, 305, 435
CviKI_1 RGCY 8 cut(s) 77, 163, 215, 263, 274, 300, 305, 435
CviQI GTAC 2 cut(s) 96, 441
DdeI CTNAG 5 cut(s) 30, 129, 150, 159, 183
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
DraIII CACNNNGTG 1 cut(s) 259
Eco32I GATATC 1 cut(s) 231
Eco81I CCTNAGG 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 358
EcoRV GATATC 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 281
FaeI CATG 1 cut(s) 259
FaiI YATR 9 cut(s) 38, 257, 277, 291, 319, 321, 390, 392, 403
FatI CATG 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 45, 189, 264
Fsp4HI GCNGC 3 cut(s) 45, 189, 264
GluI GCNGC 3 cut(s) 45, 189, 264
GsaI CCCAGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 77, 305
Hin1II CATG 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 253, 410
Hpy188I TCNGA 3 cut(s) 89, 121, 315
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 2 cut(s) 253, 410
HpyAV CCTTC 2 cut(s) 117, 345
HpyCH4V TGCA 3 cut(s) 253, 279, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 160
HpyF3I CTNAG 5 cut(s) 30, 129, 150, 159, 183
Hsp92II CATG 1 cut(s) 259
Kzo9I GATC 1 cut(s) 421
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 8 cut(s) 59, 170, 286, 324, 345, 372, 427, 445
Lsp1109I GCAGC 3 cut(s) 31, 200, 250
LweI GCATC 1 cut(s) 288
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 8, 255
MluCI AATT 4 cut(s) 15, 122, 192, 363
MmeI TCCRAC 3 cut(s) 94, 200, 350
MnlI CCTC 8 cut(s) 60, 63, 66, 156, 159, 174, 192, 412
Mph1103I ATGCAT 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 154
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 26, 160
NdeII GATC 1 cut(s) 421
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 281
PctI GAATGC 1 cut(s) 154
PkrI GCNGC 3 cut(s) 46, 190, 265
Psp6I CCWGG 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 68
PspPI GGNCC 2 cut(s) 76, 303
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 2 cut(s) 97, 442
RsaNI GTAC 2 cut(s) 96, 441
SatI GCNGC 3 cut(s) 45, 189, 264
Sau3AI GATC 1 cut(s) 421
Sau96I GGNCC 2 cut(s) 76, 303
ScaI AGTACT 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 2 cut(s) 8, 255
SetI ASST 1 cut(s) 109
SfaNI GCATC 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 4 cut(s) 15, 122, 192, 363
StyD4I CCNGG 1 cut(s) 358
TaqI TCGA 1 cut(s) 286
TasI AATT 4 cut(s) 15, 122, 192, 363
TatI WGTACW 1 cut(s) 440
TscAI CASTG 2 cut(s) 207, 421
TseI GCWGC 3 cut(s) 44, 188, 263
TspDTI ATGAA 2 cut(s) 99, 235
TspRI CASTG 2 cut(s) 207, 421
VneI GTGCAC 1 cut(s) 251
XapI RAATTY 1 cut(s) 122
ZrmI AGTACT 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.