Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002251

Physical Location & Seq

Genomic Coordinates Reverse (-)

20987872 .. 20996798

Gene Structure 8927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAACCTCATCTCCCCGACTTCCTTGTCGCACCCAAAACTCGATTATCATTCTTCCTCGTTGCATCACTCCCCAGCAGCACAAACTCCAACTCATTCACCGCTAAGCTGGCACCTCCAAGCCCCCACAAGCTTCGTCAATACAACTTGACGGAAGCCAAAGCTTCTCCTCCTCCATCACATGACACACTTGTCCTTCTAAACATGCCTTCACGTTTGGTCATTCAGCTAAAAACTTTCTCAGTTTTGCCTTCTTCTAAGGAAGCTAGATCACCGGGACTAGATCTCCTCAAGATAAGTGATTCTTCTTGTTCTCCAAATAAGAAATTATGGACCGTGGATCATGATCTGTTTGCTTTCATCCATATTCAATCCATAAGAGGTGACAAGCATGTCCTTAGTTGGTCATCAAAGAGAGATATATGTTCCAACAAATCCTTCGGTGCTGAAACACTACCACCAGGAACTGTTGTTCCACAAACTGATTTGTGTATGCACAGATTATGGGGTAAACCCAGTGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

175

Amino Acids

19.35

Weight (kDa)

9.4

Isoelectric Point (pI)

67.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13760
fragaria_vesca	FvH4_5g01450 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810
malus_domestica	MD02G1300300.v1.1 MD07G1024500.v1.1
prunus_persica	Prupe.2G024300_v2.0.a1
pyrus_communis	pycom02g25230 pycom07g01900
rosa_chinensis	RchiOBHm_Chr1g0318441 RchiOBHm_Chr2g0108781 RchiOBHm_Chr2g0108791 RchiOBHm_Chr3g0495071
rosa_laevigata	RLG00000001167 RLG00000030537 RLG00000036230
rosa_multiflora	Rmu_sc0003936.1_g000042
rosa_roxburghii	Rroxscaffold_2G00099340 Rroxscaffold_3G00250150 Rroxscaffold_4G00329250 Rroxscaffold_7G00170850 Rroxscaffold_7G00196360
rosa_rugosa	Rorug01G0021200 Rorug01G0021300
rosa_samantha	Rh1AG033300 Rh1BG029400 Rh1CG031700 Rh1CG032900 Rh1DG037600 Rh1DG037800 Rh2AG206300 Rh2BG217600 Rh2CG209200 Rh2DG212500 Rh3AG318700 Rh3CG351300 Rh5AG311200 Rh5AG311300
rosa_wichuraiana	Rw1G002670 Rw5G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	26, 191, 392
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AloI	GAACNNNNNNTCC	5 cut(s)	29, 456, 457, 488, 489
AluBI	AGCT	5 cut(s)	109, 133, 164, 229, 266
AluI	AGCT	5 cut(s)	109, 133, 164, 229, 266
AlwI	GGATC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	467
ApeKI	GCWGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	333
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	91, 264, 395
AvaII	GGWCC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	2 cut(s)	267, 281
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	276, 462
Bme18I	GGWCC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	6, 114
BmrFI	CCNGG	2 cut(s)	276, 462
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	74
BmuI	ACTGGG	1 cut(s)	510
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 270, 300
Bse1I	ACTGG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	3 cut(s)	159, 162, 278
BseXI	GCAGC	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	269, 283, 340, 346
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	6, 114
BspPI	GGATC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	4 cut(s)	269, 283, 340, 346
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	337, 469
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	105, 241, 258, 398
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	4 cut(s)	272, 286, 343, 349
BstMBI	GATC	4 cut(s)	269, 283, 340, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	2 cut(s)	208, 395
BstSCI	CCNGG	2 cut(s)	274, 460
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	467
CciI	TCATGA	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	333
CviAII	CATG	4 cut(s)	182, 205, 344, 392
CviJI	RGCY	7 cut(s)	109, 123, 133, 158, 164, 229, 266
CviKI_1	RGCY	7 cut(s)	109, 123, 133, 158, 164, 229, 266
DdeI	CTNAG	4 cut(s)	105, 241, 258, 398
DpnI	GATC	4 cut(s)	271, 285, 342, 348
DpnII	GATC	4 cut(s)	269, 283, 340, 346
DrdI	GACNNNNNNGTC	3 cut(s)	26, 191, 392
DseDI	GACNNNNNNGTC	3 cut(s)	26, 191, 392
Eco47I	GGWCC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	460
FaeI	CATG	4 cut(s)	185, 208, 347, 395
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	4 cut(s)	181, 204, 343, 391
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	2 cut(s)	267, 281
GluI	GCNGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	78
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	4 cut(s)	185, 208, 347, 395
HindIII	AAGCTT	2 cut(s)	131, 162
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	3 cut(s)	91, 264, 395
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188III	TCNNGA	2 cut(s)	292, 344
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	4 cut(s)	206, 219, 261, 448
HpyCH4III	ACNGT	2 cut(s)	337, 469
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	65, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	4 cut(s)	105, 241, 258, 398
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	4 cut(s)	185, 208, 347, 395
Kzo9I	GATC	4 cut(s)	269, 283, 340, 346
LpnPI	CCDG	5 cut(s)	88, 95, 288, 447, 474
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	267, 281
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	4 cut(s)	271, 285, 342, 348
MboI	GATC	4 cut(s)	269, 283, 340, 346
MboII	GAAGA	3 cut(s)	46, 246, 297
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	114, 453
MnlI	CCTC	8 cut(s)	18, 68, 126, 180, 183, 299, 374, 514
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	276, 462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	4 cut(s)	269, 283, 340, 346
NlaIII	CATG	4 cut(s)	185, 208, 347, 395
NlaIV	GGNNCC	2 cut(s)	6, 114
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	2 cut(s)	208, 395
PagI	TCATGA	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	6, 114
PspPI	GGNCC	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	283
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	4 cut(s)	269, 283, 340, 346
Sau96I	GGNCC	1 cut(s)	333
ScrFI	CCNGG	2 cut(s)	276, 462
SfaNI	GCATC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	2 cut(s)	267, 281
StyD4I	CCNGG	2 cut(s)	274, 460
TaaI	ACNGT	2 cut(s)	337, 469
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	349
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	333
XceI	RCATGY	2 cut(s)	208, 395
XspI	CTAG	2 cut(s)	267, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.