Prupe.2G024300_v2.0.a1

Belongs to the CTL (choline transporter-like) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
2406871 .. 2411879
5009 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G024300.1

Sequence Viewer

Length: 1719 bp
ATGGGTGCTGCAGAGCCTGTGGTGGAGAGAGAAAGTGAAGAAGTTGAGGTGAGAGAGGAAAATGGGGAGAAGAAGGAAGAGGGGGAAGAGAGAGATGTTGAGAAAGGTGAGGAGGTGGGTTTTGAATATGAAGAACAGGCGGTGGCTGCAGAGAGCAACACCAATGATGACCATAATCAGAGAGATGTTCATATGTCAATGATGCATAGGCTAAATCCTACAAACCCTTTGAGAATCGTCATCAATAGTAACACCAGAGCTGCAACTCCACCTCCTCCTTCTCGGTTCTCTCATGGAAGTAATAATATCAGAGTTGGTGCTACTCCATCTCCTCCTCACTTCTCTCATACTCCCCCGCATTCTCAGCCTCGTTCTACACCAAACCCACAACCATCTATTACAACACTGAATTCAAGAAAATACACCAACAAGATATCTCTGTTCCTGTTCCTTCTACACATGGTTGCAGCTATTGGGCTTGTTGGTTTTCTTGTATTCAAGGGAGTTCAGGGGCTGATAGAAGCATCTGACAACAGAGTTAAGAGAGCAGAGAAAAGAGTTTTAAAGTTTTTTCTACCACAAGTTGAAGCTGCATCTCTTTTAAGCATTACCCTTGCATTTGCATGGCAAAAGGCAGTGAGGGTGTGGCCTAAATTTTTTGTTCATTTCATATTATGGACCACTTTTCTCATGTCTCTGTCTGCTGGAATTCTACTAATTTGCTTCCAAAAGCCTGCCAGTGATGGCGTTGGGGTCTGTTTTATTGCTTTTGCAATAGGCAATGGCTTATACGCTTGTTGGATCACGCAGCGGATTGGATTTTGTAGCAAGATATTGATCAAATCGCTCGAACCAGTATCAAAGTTCCCTGATTTGAATCAACCTACTTATTGGATGCTTGGGGTTGGATTTTTGTGGATGTCCCTATGGAATCTAGCAGTAATTGGAGCTCTGAATTTCTATTTTACCCCACTGATGATAGTTTTGCTGGGATTGAGCTTGGCTTGGACAGCCGAAGTAATGAGGAATGTGGCAAATATAACCGTGAGTAGGGTTATTTCTCTGTATTATCTCAGAGGAATGCAATCTAACACTAAATTTTGCTTTCAAAGAGCCTTGAGTAAAAGTCTTGGAAGTGCATGCTTTGGATCTCTCTTTGTGCCTGCAATTGAAGCCCTGAGAATTGTTGCTCGAGCCTTAAATTTACTTGAGGGAGAAGATGAGTTCATGTTTTCTTGTGCACATTGCTGTCTCAGGGTCATGGAGTCCATCTTCAGATATGGCAATGGCTGGGCCTTTGTACAGATAGCAGCATATGGGAAGGGTTTTGTGAAGGCATCACAAGACACTTGGGAGCTCTTTGAAAGGCAAGAAATGGAACAAATTGTTGATTCGGATATTACCAGCTCAATCTGCTTCTTAACCGGCGTCTGCAGTGGCTCAATGTGTGTCATAGTTGTGGCTGCTTGGACCGCCAAGGTGCACCAAAGTTTCACAGCCACCATTTCCCTCCTTGCATTCTTCATTGGATACCTTATGACCAGGATAGCCATGGCACTACCACATGCTTGTGTAGGTAGTTACCTTGTTTGCTATGCAGAGAACCCAGACAACAGATTATTTGACAGCACAATTAAGGATCGTCTGGCTTTGATGAAATCTGGTCGAGATGTAGCCATCCTCACACCTCGAGTACCCCGCAGGTTTGCAGCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

573

Amino Acids

63.88

Weight (kDa)

8.46

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1692
AciI CCGC 5 cut(s) 140, 356, 811, 1473, 1699
AclWI GGATC 3 cut(s) 809, 1156, 1647
AcsI RAATTY 6 cut(s) 409, 653, 708, 955, 1097, 1201
AcuI CTGAAG 1 cut(s) 1258
AcyI GRCGYC 1 cut(s) 1428
AfaI GTAC 2 cut(s) 1302, 1695
AfiI CCNNNNNNNGG 1 cut(s) 1050
AgsI TTSAA 8 cut(s) 125, 414, 499, 587, 877, 1109, 1172, 1364
AjnI CCWGG 1 cut(s) 1541
AluBI AGCT 7 cut(s) 260, 470, 590, 950, 999, 1357, 1407
AluI AGCT 7 cut(s) 260, 470, 590, 950, 999, 1357, 1407
Alw21I GWGCWC 4 cut(s) 952, 1243, 1359, 1485
Alw26I GTCTC 2 cut(s) 699, 1256
Alw44I GTGCAC 2 cut(s) 1239, 1481
AlwI GGATC 3 cut(s) 809, 1156, 1647
AlwNI CAGNNNCTG 2 cut(s) 17, 514
Ama87I CYCGRG 2 cut(s) 1191, 1689
AoxI GGCC 2 cut(s) 647, 1293
ApaLI GTGCAC 2 cut(s) 1239, 1481
ApeKI GCWGC 9 cut(s) 8, 146, 260, 467, 590, 808, 1310, 1463, 1709
ApoI RAATTY 6 cut(s) 409, 653, 708, 955, 1097, 1201
AspS9I GGNCC 3 cut(s) 678, 1293, 1470
AsuHPI GGTGA 2 cut(s) 61, 119
AvaI CYCGRG 2 cut(s) 1191, 1689
AvaII GGWCC 2 cut(s) 678, 1470
BaeGI GKGCMC 2 cut(s) 1243, 1485
BanII GRGCYC 2 cut(s) 952, 1359
Bbv12I GWGCWC 4 cut(s) 952, 1243, 1359, 1485
BbvI GCAGC 7 cut(s) 133, 247, 479, 577, 820, 1322, 1450
BccI CCATC 5 cut(s) 334, 400, 737, 1277, 1685
BciT130I CCWGG 1 cut(s) 1543
BciVI GTATCC 1 cut(s) 1523
BclI TGATCA 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 699, 1256
BfaI CTAG 1 cut(s) 935
BfmI CTRYAG 3 cut(s) 9, 147, 1432
BfuAI ACCTGC 1 cut(s) 1692
BfuI GTATCC 1 cut(s) 1523
BisI GCNGC 9 cut(s) 9, 147, 261, 468, 591, 809, 1311, 1464, 1710
BlsI GCNGC 9 cut(s) 10, 148, 262, 469, 592, 810, 1312, 1465, 1711
Bme1390I CCNGG 1 cut(s) 1543
Bme18I GGWCC 2 cut(s) 678, 1470
BmeT110I CYCGRG 2 cut(s) 1191, 1689
BmgT120I GGNCC 3 cut(s) 678, 1293, 1470
BmrFI CCNGG 1 cut(s) 1543
BmsI GCATC 5 cut(s) 192, 533, 602, 885, 1346
BpuEI CTTGAG 2 cut(s) 1138, 1229
BsaBI GATNNNNATC 2 cut(s) 836, 876
BsaHI GRCGYC 1 cut(s) 1428
BsaJI CCNNGG 2 cut(s) 1476, 1551
BsaXI ACNNNNNCTCC 4 cut(s) 256, 286, 313, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 1050
Bse118I RCCGGY 1 cut(s) 1424
Bse1I ACTGG 2 cut(s) 738, 854
Bse3DI GCAATG 3 cut(s) 787, 1243, 1291
Bse8I GATNNNNATC 2 cut(s) 836, 876
BseBI CCWGG 1 cut(s) 1543
BseDI CCNNGG 2 cut(s) 1476, 1551
BseGI GGATG 3 cut(s) 900, 924, 1677
BseJI GATNNNNATC 2 cut(s) 836, 876
BseLI CCNNNNNNNGG 1 cut(s) 1050
BseMI GCAATG 3 cut(s) 787, 1243, 1291
BseMII CTCAG 4 cut(s) 377, 1087, 1169, 1267
BseNI ACTGG 2 cut(s) 738, 854
BseRI GAGGAG 4 cut(s) 125, 264, 321, 324
BseSI GKGCMC 2 cut(s) 1243, 1485
BseXI GCAGC 7 cut(s) 133, 247, 479, 577, 820, 1322, 1450
BseYI CCCAGC 2 cut(s) 988, 1290
BshFI GGCC 2 cut(s) 649, 1295
BsiHKAI GWGCWC 4 cut(s) 952, 1243, 1359, 1485
BsiHKCI CYCGRG 2 cut(s) 1191, 1689
BsiSI CCGG 1 cut(s) 1425
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 1 cut(s) 1050
BsmAI GTCTC 2 cut(s) 699, 1256
BsmFI GGGAC 1 cut(s) 907
BsmI GAATGC 3 cut(s) 358, 1086, 1517
BsnI GGCC 2 cut(s) 649, 1295
BsoBI CYCGRG 2 cut(s) 1191, 1689
Bsp1286I GDGCHC 4 cut(s) 952, 1243, 1359, 1485
Bsp1407I TGTACA 1 cut(s) 1300
Bsp143I GATC 4 cut(s) 801, 837, 1148, 1639
Bsp19I CCATGG 1 cut(s) 1551
BspACI CCGC 5 cut(s) 140, 356, 811, 1473, 1699
BspANI GGCC 2 cut(s) 649, 1295
BspCNI CTCAG 4 cut(s) 376, 1086, 1170, 1266
BspMAI CTGCAG 3 cut(s) 13, 151, 1436
BspMI ACCTGC 1 cut(s) 1692
BspPI GGATC 3 cut(s) 809, 1156, 1647
BsrDI GCAATG 3 cut(s) 787, 1243, 1291
BsrFI RCCGGY 1 cut(s) 1424
BsrGI TGTACA 1 cut(s) 1300
BsrI ACTGG 2 cut(s) 738, 854
BssAI RCCGGY 1 cut(s) 1424
BssECI CCNNGG 2 cut(s) 1476, 1551
BssMI GATC 4 cut(s) 801, 837, 1148, 1639
BssNI GRCGYC 1 cut(s) 1428
BssT1I CCWWGG 2 cut(s) 1476, 1551
Bst2UI CCWGG 1 cut(s) 1543
Bst4CI ACNGT 1 cut(s) 1045
Bst6I CTCTTC 2 cut(s) 72, 81
BstACI GRCGYC 1 cut(s) 1428
BstAUI TGTACA 1 cut(s) 1300
BstC8I GCNNGC 3 cut(s) 735, 1141, 1164
BstDEI CTNAG 4 cut(s) 363, 1073, 1178, 1253
BstDSI CCRYGG 1 cut(s) 1551
BstF5I GGATG 3 cut(s) 900, 924, 1677
BstKTI GATC 4 cut(s) 804, 840, 1151, 1642
BstMAI GTCTC 2 cut(s) 699, 1256
BstMBI GATC 4 cut(s) 801, 837, 1148, 1639
BstMWI GCNNNNNNNGC 6 cut(s) 146, 364, 1010, 1172, 1413, 1472
BstNI CCWGG 1 cut(s) 1543
BstNSI RCATGY 2 cut(s) 1143, 1568
BstSCI CCNGG 1 cut(s) 1541
BstSFI CTRYAG 3 cut(s) 9, 147, 1432
BstSLI GKGCMC 2 cut(s) 1243, 1485
BstV1I GCAGC 7 cut(s) 133, 247, 479, 577, 820, 1322, 1450
BstX2I RGATCY 1 cut(s) 1148
BstYI RGATCY 1 cut(s) 1148
BsuI GTATCC 1 cut(s) 1523
BsuRI GGCC 2 cut(s) 649, 1295
BtgI CCRYGG 1 cut(s) 1551
BtsCI GGATG 3 cut(s) 900, 924, 1677
BtsI GCAGTG 2 cut(s) 642, 1441
BtsIMutI CAGTG 5 cut(s) 404, 642, 745, 971, 1441
BveI ACCTGC 1 cut(s) 1692
Cac8I GCNNGC 3 cut(s) 735, 1141, 1164
CaiI CAGNNNCTG 2 cut(s) 17, 514
Cfr10I RCCGGY 1 cut(s) 1424
Cfr13I GGNCC 3 cut(s) 678, 1293, 1470
CseI GACGC 1 cut(s) 1417
Csp6I GTAC 2 cut(s) 1301, 1694
CviAII CATG 9 cut(s) 293, 460, 624, 691, 1140, 1228, 1261, 1552, 1565
CviQI GTAC 2 cut(s) 1301, 1694
DdeI CTNAG 4 cut(s) 363, 1073, 1178, 1253
DpnI GATC 4 cut(s) 803, 839, 1150, 1641
DpnII GATC 4 cut(s) 801, 837, 1148, 1639
DraI TTTAAA 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 72, 81
EarI CTCTTC 2 cut(s) 72, 81
Ecl136II GAGCTC 2 cut(s) 950, 1357
Eco130I CCWWGG 2 cut(s) 1476, 1551
Eco24I GRGCYC 2 cut(s) 952, 1359
Eco32I GATATC 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 678, 1470
Eco53kI GAGCTC 2 cut(s) 950, 1357
Eco57I CTGAAG 1 cut(s) 1258
Eco88I CYCGRG 2 cut(s) 1191, 1689
EcoICRI GAGCTC 2 cut(s) 950, 1357
EcoRI GAATTC 2 cut(s) 409, 708
EcoRII CCWGG 1 cut(s) 1541
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 1476, 1551
EcoT22I ATGCAT 1 cut(s) 207
EcoT38I GRGCYC 2 cut(s) 952, 1359
ErhI CCWWGG 2 cut(s) 1476, 1551
FaeI CATG 9 cut(s) 296, 463, 627, 694, 1143, 1231, 1264, 1555, 1568
FaqI GGGAC 1 cut(s) 907
FatI CATG 9 cut(s) 292, 459, 623, 690, 1139, 1227, 1260, 1551, 1564
FauI CCCGC 2 cut(s) 363, 1706
FauNDI CATATG 2 cut(s) 192, 1315
FbaI TGATCA 1 cut(s) 837
Fnu4HI GCNGC 9 cut(s) 9, 147, 261, 468, 591, 809, 1311, 1464, 1710
FokI GGATG 3 cut(s) 907, 931, 1664
FriOI GRGCYC 2 cut(s) 952, 1359
Fsp4HI GCNGC 9 cut(s) 9, 147, 261, 468, 591, 809, 1311, 1464, 1710
FspBI CTAG 1 cut(s) 935
GluI GCNGC 9 cut(s) 9, 147, 261, 468, 591, 809, 1311, 1464, 1710
GsaI CCCAGC 2 cut(s) 992, 1294
HaeIII GGCC 2 cut(s) 649, 1295
HapII CCGG 1 cut(s) 1425
HgaI GACGC 1 cut(s) 1417
Hin1I GRCGYC 1 cut(s) 1428
Hin1II CATG 9 cut(s) 296, 463, 627, 694, 1143, 1231, 1264, 1555, 1568
HinfI GANTC 5 cut(s) 234, 877, 931, 1265, 1391
HpaII CCGG 1 cut(s) 1425
HphI GGTGA 2 cut(s) 61, 119
Hpy166II GTNNAC 2 cut(s) 1241, 1483
Hpy188I TCNGA 7 cut(s) 180, 311, 529, 954, 1076, 1277, 1396
Hpy188III TCNNGA 2 cut(s) 414, 1667
Hpy8I GTNNAC 2 cut(s) 1241, 1483
HpyAV CCTTC 5 cut(s) 67, 288, 461, 1315, 1327
HpyCH4III ACNGT 1 cut(s) 1045
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 364, 1010, 1172, 1413, 1472
HpyF3I CTNAG 4 cut(s) 363, 1073, 1178, 1253
Hsp92I GRCGYC 1 cut(s) 1428
Hsp92II CATG 9 cut(s) 296, 463, 627, 694, 1143, 1231, 1264, 1555, 1568
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 4 cut(s) 801, 837, 1148, 1639
LmnI GCTCC 2 cut(s) 947, 1354
Lsp1109I GCAGC 7 cut(s) 133, 247, 479, 577, 820, 1322, 1450
LweI GCATC 5 cut(s) 192, 533, 602, 885, 1346
MaeI CTAG 1 cut(s) 935
MaeIII GTNAC 2 cut(s) 248, 1580
MalI GATC 4 cut(s) 803, 839, 1150, 1641
MboI GATC 4 cut(s) 801, 837, 1148, 1639
MboII GAAGA 8 cut(s) 50, 82, 89, 98, 143, 1229, 1264, 1513
MfeI CAATTG 1 cut(s) 1167
MflI RGATCY 1 cut(s) 1148
MhlI GDGCHC 4 cut(s) 952, 1243, 1359, 1485
MlyI GAGTC 1 cut(s) 1274
MmeI TCCRAC 2 cut(s) 779, 886
Mph1103I ATGCAT 1 cut(s) 207
MseI TTAA 6 cut(s) 540, 563, 602, 1199, 1421, 1635
MslI CAYNNNNRTG 3 cut(s) 622, 1457, 1569
MspA1I CMGCKG 1 cut(s) 811
MspI CCGG 1 cut(s) 1425
MspR9I CCNGG 1 cut(s) 1543
MunI CAATTG 1 cut(s) 1167
Mva1269I GAATGC 3 cut(s) 358, 1086, 1517
MvaI CCWGG 1 cut(s) 1543
MwoI GCNNNNNNNGC 6 cut(s) 146, 364, 1010, 1172, 1413, 1472
NcoI CCATGG 1 cut(s) 1551
NdeI CATATG 2 cut(s) 192, 1315
NdeII GATC 4 cut(s) 801, 837, 1148, 1639
NlaIII CATG 9 cut(s) 296, 463, 627, 694, 1143, 1231, 1264, 1555, 1568
NsiI ATGCAT 1 cut(s) 207
NspI RCATGY 2 cut(s) 1143, 1568
PaeI GCATGC 1 cut(s) 1143
PaeR7I CTCGAG 2 cut(s) 1191, 1689
PctI GAATGC 3 cut(s) 358, 1086, 1517
PfeI GAWTC 4 cut(s) 234, 877, 931, 1391
PkrI GCNGC 9 cut(s) 10, 148, 262, 469, 592, 810, 1312, 1465, 1711
PleI GAGTC 1 cut(s) 1273
PpsI GAGTC 1 cut(s) 1273
Psp124BI GAGCTC 2 cut(s) 952, 1359
Psp6I CCWGG 1 cut(s) 1541
PspFI CCCAGC 2 cut(s) 988, 1290
PspGI CCWGG 1 cut(s) 1541
PspPI GGNCC 3 cut(s) 678, 1293, 1470
PspXI VCTCGAGB 2 cut(s) 1191, 1689
PstI CTGCAG 3 cut(s) 13, 151, 1436
PstNI CAGNNNCTG 2 cut(s) 17, 514
PsuI RGATCY 1 cut(s) 1148
RsaI GTAC 2 cut(s) 1302, 1695
RsaNI GTAC 2 cut(s) 1301, 1694
RseI CAYNNNNRTG 3 cut(s) 622, 1457, 1569
SacI GAGCTC 2 cut(s) 952, 1359
SaqAI TTAA 6 cut(s) 540, 563, 602, 1199, 1421, 1635
SatI GCNGC 9 cut(s) 9, 147, 261, 468, 591, 809, 1311, 1464, 1710
Sau3AI GATC 4 cut(s) 801, 837, 1148, 1639
Sau96I GGNCC 3 cut(s) 678, 1293, 1470
SchI GAGTC 1 cut(s) 1274
ScrFI CCNGG 1 cut(s) 1543
SduI GDGCHC 4 cut(s) 952, 1243, 1359, 1485
SfaNI GCATC 5 cut(s) 192, 533, 602, 885, 1346
SfcI CTRYAG 3 cut(s) 9, 147, 1432
Sfr274I CTCGAG 2 cut(s) 1191, 1689
SinI GGWCC 2 cut(s) 678, 1470
SlaI CTCGAG 2 cut(s) 1191, 1689
SmiMI CAYNNNNRTG 3 cut(s) 622, 1457, 1569
SmlI CTYRAG 4 cut(s) 1117, 1191, 1208, 1689
SmoI CTYRAG 4 cut(s) 1117, 1191, 1208, 1689
SphI GCATGC 1 cut(s) 1143
SsiI CCGC 5 cut(s) 140, 356, 811, 1473, 1699
SspMI CTAG 1 cut(s) 935
SstI GAGCTC 2 cut(s) 952, 1359
StyD4I CCNGG 1 cut(s) 1541
StyI CCWWGG 2 cut(s) 1476, 1551
TaaI ACNGT 1 cut(s) 1045
TaqI TCGA 4 cut(s) 849, 1192, 1666, 1690
TatI WGTACW 1 cut(s) 1300
TfiI GAWTC 4 cut(s) 234, 877, 931, 1391
Tru1I TTAA 6 cut(s) 540, 563, 602, 1199, 1421, 1635
Tru9I TTAA 6 cut(s) 540, 563, 602, 1199, 1421, 1635
TscAI CASTG 5 cut(s) 411, 642, 745, 978, 1441
TseI GCWGC 9 cut(s) 8, 146, 260, 467, 590, 808, 1310, 1463, 1709
TspDTI ATGAA 7 cut(s) 144, 179, 653, 658, 1216, 1513, 1670
TspRI CASTG 5 cut(s) 411, 642, 745, 978, 1441
VneI GTGCAC 2 cut(s) 1239, 1481
VpaK11BI GGWCC 2 cut(s) 678, 1470
XapI RAATTY 6 cut(s) 409, 653, 708, 955, 1097, 1201
XceI RCATGY 2 cut(s) 1143, 1568
XcmI CCANNNNNNNNNTGG 1 cut(s) 1549
XhoI CTCGAG 2 cut(s) 1191, 1689
XspI CTAG 1 cut(s) 935
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.