Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002251

Physical Location & Seq

Genomic Coordinates Forward (+)

20940708 .. 20976284

Gene Structure 35577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAAGTTTCCCGCCTCTGCAATCGAAATTCCGTCACTCTTCACACAAATCTTGGCGACGTCATGTGCGAGGTCTTCTGCGACGAGCTCCCTAAAACCACCAAGAGGCTTAATCCTACAAACCCTTTGAGAATTGCTATCAATGCTAAGACCATAAGTGCTGCTCCTCCTCCTCCTTATCGGTTCCAACTGGCCCAAAATGTCAGAGTTGGTACTACTCCACCTTCATCTCTATCTGAATTCTCTCAGTCTCACACAACTCCTCCTCAGCATTCTCAGCCTCGCACTATTCCAACCCCTCAGGCAGCAATTACAACATTGAACTCAAGAGCCTACACAAACAAGATATCTTTGTTCCTTTTCATTGTGCACATGGTGGCTGCTATTGGGCTAGTTGCAATTGAAGCACTGAGAATTGTTGCTCAGGCTTTAAATCTACTTGAGGGTGAGGATGGGTTTATGTTTTCTTCTGCGCATTGCTTTCTCAATGTCATGCAGTGCATCTTTCGATATGGCGATGGCTGGGCCTTTGTTCAGATATATATTCCAACAAATCCTTCTGGTGCTGAAACACTACCACCAGGAATTGTTGTTCCACAAACTGATTTGTATATGCACAAATTATGGGGTAAACCCAGTGAGTTAGATAAGTGTAATGAAAAATATGATACTTCTACAAATGTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

229

Amino Acids

25.34

Weight (kDa)

8.22

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13760
fragaria_vesca	FvH4_5g01450 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810
malus_domestica	MD02G1300300.v1.1 MD07G1024500.v1.1
prunus_persica	Prupe.2G024300_v2.0.a1
pyrus_communis	pycom02g25230 pycom07g01900
rosa_chinensis	RchiOBHm_Chr1g0318441 RchiOBHm_Chr2g0108781 RchiOBHm_Chr2g0108791 RchiOBHm_Chr3g0495071
rosa_laevigata	RLG00000001167 RLG00000030537 RLG00000036230
rosa_multiflora	Rmu_sc0003936.1_g000042
rosa_roxburghii	Rroxscaffold_2G00099340 Rroxscaffold_3G00250150 Rroxscaffold_4G00329250 Rroxscaffold_7G00170850 Rroxscaffold_7G00196360
rosa_rugosa	Rorug01G0021200 Rorug01G0021300
rosa_samantha	Rh1AG033300 Rh1BG029400 Rh1CG031700 Rh1CG032900 Rh1DG037600 Rh1DG037800 Rh2AG206300 Rh2BG217600 Rh2CG209200 Rh2DG212500 Rh3AG318700 Rh3CG351300 Rh5AG311200 Rh5AG311300
rosa_wichuraiana	Rw1G002670 Rw5G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc16I	TGCGCA	1 cut(s)	474
AciI	CCGC	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	28, 239
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	322, 404
AjnI	CCWGG	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	541, 573
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	2 cut(s)	90, 372
Alw26I	GTCTC	1 cut(s)	255
Alw44I	GTGCAC	1 cut(s)	368
AoxI	GGCC	2 cut(s)	192, 525
ApaLI	GTGCAC	1 cut(s)	368
ApeKI	GCWGC	3 cut(s)	161, 305, 380
ApoI	RAATTY	2 cut(s)	28, 239
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	193, 525
AsuHPI	GGTGA	1 cut(s)	458
AxyI	CCTNAGG	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	90, 372
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	148, 317, 367
BccI	CCATC	2 cut(s)	446, 512
BciT130I	CCWGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	3 cut(s)	162, 306, 381
BlsI	GCNGC	3 cut(s)	163, 307, 382
Bme1390I	CCNGG	1 cut(s)	582
BmgT120I	GGNCC	2 cut(s)	193, 525
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	582
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	67
Bpu10I	CCTNAGC	2 cut(s)	267, 423
BpuEI	CTTGAG	2 cut(s)	310, 461
BsaHI	GRCGYC	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	195, 636
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	6 cut(s)	260, 281, 290, 314, 401, 437
BseNI	ACTGG	2 cut(s)	195, 636
BseRI	GAGGAG	5 cut(s)	156, 159, 162, 252, 255
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	3 cut(s)	148, 317, 367
BseYI	CCCAGC	1 cut(s)	522
BshFI	GGCC	2 cut(s)	194, 527
BsiHKAI	GWGCWC	2 cut(s)	90, 372
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	194, 527
Bsp1286I	GDGCHC	2 cut(s)	90, 372
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	194, 527
BspCNI	CTCAG	6 cut(s)	259, 280, 289, 313, 402, 436
BspLI	GGNNCC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	195, 636
BssNI	GRCGYC	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	582
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	60
BstDEI	CTNAG	7 cut(s)	147, 246, 267, 276, 300, 410, 423
BstF5I	GGATG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 277, 404
BstNI	CCWGG	1 cut(s)	582
BstSCI	CCNGG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	3 cut(s)	148, 317, 367
BstV2I	GAAGAC	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	194, 527
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	3 cut(s)	407, 503, 643
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	193, 525
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	3 cut(s)	64, 373, 493
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	7 cut(s)	147, 246, 267, 276, 300, 410, 423
DraI	TTTAAA	1 cut(s)	432
DraIII	CACNNNGTG	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	3 cut(s)	67, 376, 496
FatI	CATG	3 cut(s)	63, 372, 492
FauI	CCCGC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	162, 306, 381
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	162, 306, 381
FspBI	CTAG	1 cut(s)	392
FspI	TGCGCA	1 cut(s)	474
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	3 cut(s)	162, 306, 381
GsaI	CCCAGC	1 cut(s)	526
HaeIII	GGCC	2 cut(s)	194, 527
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	67, 376, 496
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	370, 632
Hpy188I	TCNGA	3 cut(s)	206, 238, 537
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	2 cut(s)	370, 632
Hpy99I	CGWCG	2 cut(s)	62, 86
HpyAV	CCTTC	2 cut(s)	234, 567
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	21, 370, 398, 496, 501, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 277, 404
HpyF3I	CTNAG	7 cut(s)	147, 246, 267, 276, 300, 410, 423
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	67, 376, 496
HspAI	GCGC	1 cut(s)	473
LmnI	GCTCC	2 cut(s)	93, 169
LpnPI	CCDG	8 cut(s)	176, 287, 410, 508, 546, 567, 594, 649
Lsp1109I	GCAGC	3 cut(s)	148, 317, 367
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	32, 67, 459
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	90, 372
MluCI	AATT	8 cut(s)	28, 132, 239, 309, 399, 414, 585, 620
MmeI	TCCRAC	3 cut(s)	211, 317, 572
MseI	TTAA	2 cut(s)	111, 431
MspR9I	CCNGG	1 cut(s)	582
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	3 cut(s)	143, 277, 404
NlaIII	CATG	3 cut(s)	67, 376, 496
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	34
NsbI	TGCGCA	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	163, 307, 382
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	580
PspFI	CCCAGC	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	2 cut(s)	193, 525
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	111, 431
SatI	GCNGC	3 cut(s)	162, 306, 381
Sau96I	GGNCC	2 cut(s)	193, 525
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	2 cut(s)	90, 372
SetI	ASST	4 cut(s)	63, 75, 90, 226
SfaNI	GCATC	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	325, 440
SmoI	CTYRAG	2 cut(s)	325, 440
Sse9I	AATT	8 cut(s)	28, 132, 239, 309, 399, 414, 585, 620
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	580
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	25, 508
TasI	AATT	8 cut(s)	28, 132, 239, 309, 399, 414, 585, 620
Tru1I	TTAA	2 cut(s)	111, 431
Tru9I	TTAA	2 cut(s)	111, 431
TscAI	CASTG	3 cut(s)	414, 503, 643
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	161, 305, 380
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	3 cut(s)	216, 352, 672
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	3 cut(s)	414, 503, 643
VneI	GTGCAC	1 cut(s)	368
XapI	RAATTY	2 cut(s)	28, 239
XspI	CTAG	1 cut(s)	392
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.