Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002251

Physical Location & Seq

Genomic Coordinates Forward (+)

23247628 .. 23248479

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25230.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTGCCGCAGAACCTGTGGAGGCGAGAGAAAGAGAGGAGCTTGAGGAGAGAGAGGAAATTGGGAGGAAGCAGGAGGAGGAGGAGGTGAGAGATGTTGAGAGAGGGGAGGTGGGTTTTGAAGAACAGGCGGTGGGAGCTCAGAGAAATATTGATATTAATCATGGAAATAATAATATTAATCAGAACGAGAGAGAAGGAGATGTTCACGTGTCAATGCTGCAGAGGCTGAATCCAACAAACCCTTTGAGAATTGTAATAAATAGCAAAACCAGAACTGCAACTCCGCCGCCGCCGCCGTCTCGGATCTCTAATATCAGAGGCGGTGGCGGCGGTGGTGGCGGTGCCACTGCTACTCCTTCTCCTTCTCAGTTCTCCTCTCGCACTAACAGTCCCCAGCATTCTCAGCCTCGTTCTACACCAACCCCACAAGTAATTTTTAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

150

Amino Acids

16.33

Weight (kDa)

5.63

Isoelectric Point (pI)

68.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13760
fragaria_vesca	FvH4_5g01450 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810
malus_domestica	MD02G1300300.v1.1 MD07G1024500.v1.1
prunus_persica	Prupe.2G024300_v2.0.a1
pyrus_communis	pycom02g25230 pycom07g01900
rosa_chinensis	RchiOBHm_Chr1g0318441 RchiOBHm_Chr2g0108781 RchiOBHm_Chr2g0108791 RchiOBHm_Chr3g0495071
rosa_laevigata	RLG00000001167 RLG00000030537 RLG00000036230
rosa_multiflora	Rmu_sc0003936.1_g000042
rosa_roxburghii	Rroxscaffold_2G00099340 Rroxscaffold_3G00250150 Rroxscaffold_4G00329250 Rroxscaffold_7G00170850 Rroxscaffold_7G00196360
rosa_rugosa	Rorug01G0021200 Rorug01G0021300
rosa_samantha	Rh1AG033300 Rh1BG029400 Rh1CG031700 Rh1CG032900 Rh1DG037600 Rh1DG037800 Rh2AG206300 Rh2BG217600 Rh2CG209200 Rh2DG212500 Rh3AG318700 Rh3CG351300 Rh5AG311200 Rh5AG311300
rosa_wichuraiana	Rw1G002670 Rw5G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	5, 344
AclWI	GGATC	1 cut(s)	314
AcvI	CACGTG	1 cut(s)	211
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	268, 300
AluBI	AGCT	2 cut(s)	43, 140
AluI	AGCT	2 cut(s)	43, 140
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	2 cut(s)	17, 229
ApeKI	GCWGC	1 cut(s)	220
AseI	ATTAAT	2 cut(s)	159, 180
AsuHPI	GGTGA	1 cut(s)	100
BanI	GGYRCC	2 cut(s)	5, 344
BanII	GRGCYC	1 cut(s)	142
BbrPI	CACGTG	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	221
BisI	GCNGC	6 cut(s)	9, 221, 290, 293, 296, 331
BlsI	GCNGC	6 cut(s)	10, 222, 291, 294, 297, 332
BmiI	GGNNCC	2 cut(s)	7, 346
BpuEI	CTTGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	6 cut(s)	268, 298, 340, 346, 370, 376
Bse8I	GATNNNNATC	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	159
BseMII	CTCAG	3 cut(s)	155, 383, 419
BseRI	GAGGAG	6 cut(s)	53, 62, 92, 95, 98, 367
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	396
BshNI	GGYRCC	2 cut(s)	5, 344
BsiHKAI	GWGCWC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	306
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	306
BspCNI	CTCAG	3 cut(s)	154, 382, 418
BspLI	GGNNCC	2 cut(s)	7, 346
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	314
BspT107I	GGYRCC	2 cut(s)	5, 344
BssMI	GATC	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	211
BstDEI	CTNAG	3 cut(s)	141, 369, 405
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	306
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 226, 295, 330, 339, 406
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 445
CaiI	CAGNNNCTG	2 cut(s)	17, 229
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	4 cut(s)	43, 140, 229, 409
CviKI_1	RGCY	4 cut(s)	43, 140, 229, 409
DdeI	CTNAG	3 cut(s)	141, 369, 405
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DraI	TTTAAA	1 cut(s)	442
EciI	GGCGGA	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	140
Eco72I	CACGTG	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	1 cut(s)	167
FaiI	YATR	1 cut(s)	165
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	6 cut(s)	9, 221, 290, 293, 296, 331
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	6 cut(s)	9, 221, 290, 293, 296, 331
GluI	GCNGC	6 cut(s)	9, 221, 290, 293, 296, 331
GsaI	CCCAGC	1 cut(s)	400
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	1 cut(s)	232
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	144, 186, 306, 320
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	191, 369, 375
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	223, 281
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 226, 295, 330, 339, 406
HpyF3I	CTNAG	3 cut(s)	141, 369, 405
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	40, 137
LpnPI	CCDG	5 cut(s)	30, 59, 113, 286, 410
Lsp1109I	GCAGC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	210
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	3 cut(s)	60, 252, 435
MmeI	TCCRAC	1 cut(s)	260
MseI	TTAA	3 cut(s)	159, 180, 441
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	6 cut(s)	137, 226, 295, 330, 339, 406
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	7, 346
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	6 cut(s)	10, 222, 291, 294, 297, 332
PmaCI	CACGTG	1 cut(s)	211
PmlI	CACGTG	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	211
PshBI	ATTAAT	2 cut(s)	159, 180
Psp124BI	GAGCTC	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	7, 346
PstI	CTGCAG	1 cut(s)	225
PstNI	CAGNNNCTG	2 cut(s)	17, 229
PsuI	RGATCY	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	3 cut(s)	159, 180, 441
SatI	GCNGC	6 cut(s)	9, 221, 290, 293, 296, 331
Sau3AI	GATC	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	6 cut(s)	19, 45, 90, 114, 142, 213
SfcI	CTRYAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	60, 252, 435
SspI	AATATT	2 cut(s)	151, 178
SstI	GAGCTC	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	1 cut(s)	213
TasI	AATT	3 cut(s)	60, 252, 435
TauI	GCSGC	5 cut(s)	11, 292, 295, 298, 333
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	159, 180, 441
Tru9I	TTAA	3 cut(s)	159, 180, 441
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	1 cut(s)	220
TspRI	CASTG	1 cut(s)	355
VspI	ATTAAT	2 cut(s)	159, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.