Rw5G029080

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002251
Physical Location & Seq
Reverse (-)
44298344 .. 44300352
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029080.1

Sequence Viewer

Length: 444 bp
ATGTTGCAGAGGCTTAATCCTACAAACCCTTTGAGAATTGCTATCAATGCTAAGACCATAAGCGCTGCTCCTCCTCCTTCTTATCGGTTCCAATCGGCCCAAAATGTCAGAGTTGGTACTACTCCACCTTCATCTCTATCTGATTTCTCTCAGTCTCACACAATTCCTCCTCAGCATTCTCAGCCTCACTCTATTCGAACCCCTCAGATATATGTTCCAACAAATCCTTCTGGTGCTGAAACACTACCACCAGGAACTGTTGTTCCACAAACTGATTTGTTTATGCACAGATTATGGGATAAACCCAGTGAGGTTTGTGAAATGTCTTACTATGATACTTTTGAATCTGCAGGATCTAAAAACCAGCCAAAGTACTTGGTAACATTTACCATTGGTATTAATCAGAAGAAAAATATTGATGCAGCAGTTAAAATTAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

147

Amino Acids

16.27

Weight (kDa)

9.37

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 74 - 144 6.9e-09 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 361
AfaI GTAC 2 cut(s) 118, 374
AfeI AGCGCT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
AloI GAACNNNNNNTCC 4 cut(s) 246, 247, 278, 279
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 361
AlwNI CAGNNNCTG 1 cut(s) 257
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 65, 422
AseI ATTAAT 1 cut(s) 399
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 97
AsuII TTCGAA 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 52, 434
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 2 cut(s) 66, 423
BlsI GCNGC 2 cut(s) 67, 424
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 252
BmrI ACTGGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 252
BseMII CTCAG 4 cut(s) 164, 185, 194, 218
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 3 cut(s) 60, 63, 159
BseXI GCAGC 2 cut(s) 52, 434
BshFI GGCC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 196
Bsp143I GATC 1 cut(s) 353
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 4 cut(s) 163, 184, 193, 217
BspLI GGNNCC 1 cut(s) 89
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 1 cut(s) 361
BspT104I TTCGAA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 306
BssMI GATC 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 259
BstBI TTCGAA 1 cut(s) 196
BstDEI CTNAG 5 cut(s) 51, 150, 171, 180, 204
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 1 cut(s) 356
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 353
BstMWI GCNNNNNNNGC 2 cut(s) 47, 181
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 52, 434
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 257
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 117, 373
CviJI RGCY 4 cut(s) 13, 98, 184, 367
CviKI_1 RGCY 4 cut(s) 13, 98, 184, 367
CviQI GTAC 2 cut(s) 117, 373
DdeI CTNAG 5 cut(s) 51, 150, 171, 180, 204
DpnI GATC 1 cut(s) 355
DpnII GATC 1 cut(s) 353
Eco47III AGCGCT 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 250
FaiI YATR 6 cut(s) 59, 211, 213, 284, 295, 333
Fnu4HI GCNGC 2 cut(s) 66, 423
Fsp4HI GCNGC 2 cut(s) 66, 423
GlaI GCGC 1 cut(s) 64
GluI GCNGC 2 cut(s) 66, 423
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 98
HhaI GCGC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 344
Hpy188I TCNGA 4 cut(s) 110, 142, 207, 405
HpyAV CCTTC 3 cut(s) 87, 138, 237
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 4 cut(s) 7, 286, 350, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 181
HpyF3I CTNAG 5 cut(s) 51, 150, 171, 180, 204
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 1 cut(s) 353
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 216, 237, 264, 319, 336, 377
Lsp1109I GCAGC 2 cut(s) 52, 434
LweI GCATC 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 379
MalI GATC 1 cut(s) 355
MboI GATC 1 cut(s) 353
MboII GAAGA 1 cut(s) 418
MflI RGATCY 1 cut(s) 353
MluCI AATT 4 cut(s) 36, 162, 432, 439
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 8 cut(s) 3, 81, 84, 177, 180, 195, 213, 304
MseI TTAA 5 cut(s) 15, 399, 429, 435, 442
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 47, 181
NdeII GATC 1 cut(s) 353
NlaIV GGNNCC 1 cut(s) 89
NspV TTCGAA 1 cut(s) 196
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 2 cut(s) 67, 424
PshBI ATTAAT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 2 cut(s) 118, 374
RsaNI GTAC 2 cut(s) 117, 373
SaqAI TTAA 5 cut(s) 15, 399, 429, 435, 442
SatI GCNGC 2 cut(s) 66, 423
Sau3AI GATC 1 cut(s) 353
Sau96I GGNCC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 252
SetI ASST 2 cut(s) 130, 315
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 196
SgeI CNNG 7 cut(s) 243, 263, 264, 318, 363, 376, 388
Sse9I AATT 4 cut(s) 36, 162, 432, 439
SspI AATATT 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 36, 162, 432, 439
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 5 cut(s) 15, 399, 429, 435, 442
Tru9I TTAA 5 cut(s) 15, 399, 429, 435, 442
TscAI CASTG 1 cut(s) 313
TseI GCWGC 2 cut(s) 65, 422
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 313
VspI ATTAAT 1 cut(s) 399
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.