RLG00000030537

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002251
Physical Location & Seq
Forward (+)
63178791 .. 63182551
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030537

Sequence Viewer

Length: 1383 bp
ATGGGTGCCGCTGAACCTGTAGTGGTGGAGAGAGAAAGTGAAAAGCTTGAGGCAAGGGAGAGAGATGAGAGGGAGGAGGAGGAAGAGGAGGAGGAGAGGAGAGAGCAGGAAGTGAAAGATGTGGAGAAAGTTCAGGTGGGTTTTGAACAACAGAGCAATATTAATCATGATCAGAGTAGTCAGAGAGATGTTCATGTGTCAATGTTGCAGAGGCTTAATCCTACAAACCCTTTGAGAATTGCTATCAATGCTAAAACCAGAAGCGCTGCTCCTCCTCCTCCTCATCGGTTCCAACAGGCCCAAAATGTCAGAGTTGGTACTACTCCATCTCCATCTCTATCTGATTTCTCTCAGTCTCACACAACTCCTTCCCACACAACTCCTCCTCCTCCTCCTCCTCAGCATTCTCAGCCTCGCTCTATTCCAACCCCTCAACCAGCGATTACAACACTGAACTCAAGAGCCTACACCAACAAGATATCTTTGTTCCTTTTCGTTGTGCACATGGTCGGCGCTATTGGGCTAGTTGGTTTTCTGACATTCAAGGGAGTTCAGGGTCTGATAAAAGATTCAGGCAGTATTTCGAGAAAGGAGAAAAGGGTGTTAAAGTATTTTCTACCACAAGTGGAAGCTGCATCTCTTATGAGCATTACTCTTGCATTTGCATGGCAAAAGGCATTTAGGAAATGGCCTACATTTATGGTTCATTTCATACTATGGAACACTTTTGTCATGAGTTTATCTGCTGGAATCCTACTAATTTGTTTCCAAAAGCCCACCACCACTGGCGTGGGAGTCTGTTTCATTGGCTTTGCCATAGGGAATAGCTTGTACGCTTGTTGGATCACGCCGCGGATAGGATTTTGTATCAAGATATTGATCAAGTCGCTCGAACCTGTATCAAAGTTCCGTGATTTGAATCAACCCACTTACTGGATGCTTGGGTTCGGATTTTTGTGGATGTCTCTATGGATTTTAGGAGTCATTGGAGCCTTGAATTTCTACTTTCCTCCACTGGTCATAATTTCATTGGTATTGAGCCTGATGTGGACAGCCGAAGTAATGAGGAATGTAGTTAATATAACTGTGAGTAGGGTGATTGCTCTATATTATCTCAGAGGAATGCAGTCCAATACTCAGTTTTGTTTCCAGAGAGCCTTGAGCAAAAATCTTGGAAGTGCTTGTTTTGGATCTCTGTTTGTGCCAGCAATTGAAGCGCTGAGAATTGTTGCTCGAGCTTTAAATCTACTTGAGGGAGAGGATGAGTTCATGTTTTCTTGTGCGCATTGCTGTCTCCATGTCATGCAGTGCATCTTCCGATATGGCAATGGCTGGGCCTTTGTTCAGGTACCTTTACTCAAGTCATTAGCAATTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

461

Amino Acids

51.76

Weight (kDa)

9.06

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 267 - 450 4.3e-19 Plasma-membrane choline transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1284
Acc65I GGTACC 1 cut(s) 1348
AccB1I GGYRCC 2 cut(s) 5, 1348
AccB7I CCANNNNNTGG 1 cut(s) 933
AccII CGCG 1 cut(s) 853
AciI CCGC 3 cut(s) 9, 851, 853
AclWI GGATC 2 cut(s) 851, 1198
AcsI RAATTY 1 cut(s) 997
AfaI GTAC 3 cut(s) 319, 833, 1350
AfeI AGCGCT 2 cut(s) 265, 1218
AfiI CCNNNNNNNGG 2 cut(s) 857, 933
AgsI TTSAA 5 cut(s) 146, 544, 919, 997, 1214
AleI CACNNNNGTG 1 cut(s) 788
AluBI AGCT 4 cut(s) 46, 632, 828, 1238
AluI AGCT 4 cut(s) 46, 632, 828, 1238
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 3 cut(s) 360, 969, 1298
Alw44I GTGCAC 1 cut(s) 500
AlwI GGATC 2 cut(s) 851, 1198
AlwNI CAGNNNCTG 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 1233
Aor51HI AGCGCT 2 cut(s) 265, 1218
AoxI GGCC 3 cut(s) 297, 689, 1335
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 2 cut(s) 266, 632
ApoI RAATTY 1 cut(s) 997
AseI ATTAAT 1 cut(s) 162
Asp718I GGTACC 1 cut(s) 1348
AspLEI GCGC 4 cut(s) 266, 515, 1219, 1285
AspS9I GGNCC 2 cut(s) 298, 1335
AsuHPI GGTGA 1 cut(s) 1108
AvaI CYCGRG 1 cut(s) 1233
BaeGI GKGCMC 1 cut(s) 504
BanI GGYRCC 2 cut(s) 5, 1348
Bbv12I GWGCWC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 253, 619
BccI CCATC 2 cut(s) 334, 340
BclI TGATCA 2 cut(s) 169, 879
BcoDI GTCTC 3 cut(s) 360, 969, 1298
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 3 cut(s) 267, 516, 1220
BisI GCNGC 4 cut(s) 9, 267, 633, 851
BlsI GCNGC 4 cut(s) 10, 268, 634, 852
BmeT110I CYCGRG 1 cut(s) 1233
BmgT120I GGNCC 2 cut(s) 298, 1335
BmiI GGNNCC 4 cut(s) 7, 290, 991, 1350
BmsI GCATC 3 cut(s) 644, 927, 1320
BplI GAGNNNNNCTC 2 cut(s) 637, 669
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 5 cut(s) 68, 442, 1180, 1271, 1343
BsaBI GATNNNNATC 2 cut(s) 878, 918
BsaJI CCNNGG 1 cut(s) 851
BsaXI ACNNNNNCTCC 6 cut(s) 313, 343, 367, 370, 397, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 857, 933
Bse1I ACTGG 3 cut(s) 790, 938, 1020
Bse3DI GCAATG 2 cut(s) 1285, 1333
Bse8I GATNNNNATC 2 cut(s) 878, 918
BseDI CCNNGG 1 cut(s) 851
BseGI GGATG 3 cut(s) 942, 966, 1267
BseJI GATNNNNATC 2 cut(s) 878, 918
BseLI CCNNNNNNNGG 2 cut(s) 857, 933
BseMI GCAATG 2 cut(s) 1285, 1333
BseMII CTCAG 6 cut(s) 365, 413, 422, 1129, 1151, 1211
BseNI ACTGG 3 cut(s) 790, 938, 1020
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 2 cut(s) 253, 619
BseYI CCCAGC 1 cut(s) 1332
Bsh1236I CGCG 1 cut(s) 853
BshFI GGCC 3 cut(s) 299, 691, 1337
BshNI GGYRCC 2 cut(s) 5, 1348
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 1233
BslI CCNNNNNNNGG 2 cut(s) 857, 933
BsmAI GTCTC 3 cut(s) 360, 969, 1298
BsmI GAATGC 2 cut(s) 403, 1128
BsnI GGCC 3 cut(s) 299, 691, 1337
BsoBI CYCGRG 1 cut(s) 1233
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 169, 843, 879, 1190
BspACI CCGC 3 cut(s) 9, 851, 853
BspANI GGCC 3 cut(s) 299, 691, 1337
BspCNI CTCAG 6 cut(s) 364, 412, 421, 1128, 1150, 1212
BspFNI CGCG 1 cut(s) 853
BspHI TCATGA 2 cut(s) 166, 732
BspLI GGNNCC 4 cut(s) 7, 290, 991, 1350
BspPI GGATC 2 cut(s) 851, 1198
BspT107I GGYRCC 2 cut(s) 5, 1348
BsrDI GCAATG 2 cut(s) 1285, 1333
BsrI ACTGG 3 cut(s) 790, 938, 1020
BssECI CCNNGG 1 cut(s) 851
BssMI GATC 4 cut(s) 169, 843, 879, 1190
Bst4CI ACNGT 1 cut(s) 1087
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 1206
BstDEI CTNAG 6 cut(s) 351, 399, 408, 1115, 1137, 1220
BstDSI CCRYGG 1 cut(s) 851
BstF5I GGATG 3 cut(s) 942, 966, 1267
BstFNI CGCG 1 cut(s) 853
BstH2I RGCGCY 3 cut(s) 267, 516, 1220
BstHHI GCGC 4 cut(s) 266, 515, 1219, 1285
BstKTI GATC 4 cut(s) 172, 846, 882, 1193
BstMAI GTCTC 3 cut(s) 360, 969, 1298
BstMBI GATC 4 cut(s) 169, 843, 879, 1190
BstMWI GCNNNNNNNGC 3 cut(s) 248, 409, 1214
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 504
BstUI CGCG 1 cut(s) 853
BstV1I GCAGC 2 cut(s) 253, 619
BstX2I RGATCY 1 cut(s) 1190
BstXI CCANNNNNNTGG 1 cut(s) 790
BstYI RGATCY 1 cut(s) 1190
BsuRI GGCC 3 cut(s) 299, 691, 1337
BtgI CCRYGG 1 cut(s) 851
BtsCI GGATG 3 cut(s) 942, 966, 1267
BtsI GCAGTG 1 cut(s) 1313
BtsIMutI CAGTG 4 cut(s) 449, 783, 1013, 1313
Cac8I GCNNGC 1 cut(s) 1206
CaiI CAGNNNCTG 1 cut(s) 559
CciI TCATGA 2 cut(s) 166, 732
CfoI GCGC 4 cut(s) 266, 515, 1219, 1285
Cfr13I GGNCC 2 cut(s) 298, 1335
Cfr42I CCGCGG 1 cut(s) 854
Csp6I GTAC 3 cut(s) 318, 832, 1349
CviAII CATG 8 cut(s) 167, 194, 505, 666, 733, 1270, 1298, 1303
CviQI GTAC 3 cut(s) 318, 832, 1349
DdeI CTNAG 6 cut(s) 351, 399, 408, 1115, 1137, 1220
DpnI GATC 4 cut(s) 171, 845, 881, 1192
DpnII GATC 4 cut(s) 169, 843, 879, 1190
DraI TTTAAA 1 cut(s) 1242
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 480
Eco47III AGCGCT 2 cut(s) 265, 1218
Eco88I CYCGRG 1 cut(s) 1233
EcoRV GATATC 1 cut(s) 480
FaeI CATG 8 cut(s) 170, 197, 508, 669, 736, 1273, 1301, 1306
FatI CATG 8 cut(s) 166, 193, 504, 665, 732, 1269, 1297, 1302
FbaI TGATCA 2 cut(s) 169, 879
Fnu4HI GCNGC 4 cut(s) 9, 267, 633, 851
FokI GGATG 3 cut(s) 949, 973, 1274
Fsp4HI GCNGC 4 cut(s) 9, 267, 633, 851
FspAI RTGCGCAY 1 cut(s) 1284
FspBI CTAG 1 cut(s) 524
FspI TGCGCA 1 cut(s) 1284
GlaI GCGC 4 cut(s) 265, 514, 1218, 1284
GluI GCNGC 4 cut(s) 9, 267, 633, 851
GsaI CCCAGC 1 cut(s) 1336
HaeII RGCGCY 3 cut(s) 267, 516, 1220
HaeIII GGCC 3 cut(s) 299, 691, 1337
HhaI GCGC 4 cut(s) 266, 515, 1219, 1285
Hin1II CATG 8 cut(s) 170, 197, 508, 669, 736, 1273, 1301, 1306
Hin6I GCGC 4 cut(s) 264, 513, 1217, 1283
HinP1I GCGC 4 cut(s) 264, 513, 1217, 1283
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 5 cut(s) 569, 750, 795, 919, 981
HphI GGTGA 1 cut(s) 1108
Hpy166II GTNNAC 2 cut(s) 502, 1050
Hpy188I TCNGA 9 cut(s) 174, 183, 311, 343, 537, 561, 950, 1118, 1319
Hpy188III TCNNGA 7 cut(s) 167, 459, 585, 733, 871, 1150, 1380
Hpy8I GTNNAC 2 cut(s) 502, 1050
HpyAV CCTTC 1 cut(s) 378
HpyCH4III ACNGT 1 cut(s) 1087
HpyCH4V TGCA 8 cut(s) 208, 502, 635, 659, 665, 1126, 1306, 1311
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 409, 1214
HpyF3I CTNAG 6 cut(s) 351, 399, 408, 1115, 1137, 1220
Hsp92II CATG 8 cut(s) 170, 197, 508, 669, 736, 1273, 1301, 1306
HspAI GCGC 4 cut(s) 264, 513, 1217, 1283
KpnI GGTACC 1 cut(s) 1352
Ksp22I TGATCA 2 cut(s) 169, 879
KspI CCGCGG 1 cut(s) 854
Kzo9I GATC 4 cut(s) 169, 843, 879, 1190
LmnI GCTCC 2 cut(s) 274, 989
Lsp1109I GCAGC 2 cut(s) 253, 619
LweI GCATC 3 cut(s) 644, 927, 1320
MaeI CTAG 1 cut(s) 524
MalI GATC 4 cut(s) 171, 845, 881, 1192
MboI GATC 4 cut(s) 169, 843, 879, 1190
MboII GAAGA 3 cut(s) 95, 1306, 1368
MfeI CAATTG 1 cut(s) 1209
MflI RGATCY 1 cut(s) 1190
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 7 cut(s) 237, 759, 997, 1023, 1209, 1224, 1371
MlyI GAGTC 2 cut(s) 804, 990
MmeI TCCRAC 3 cut(s) 316, 449, 821
MseI TTAA 5 cut(s) 162, 216, 605, 1077, 1241
MslI CAYNNNNRTG 2 cut(s) 664, 788
MspA1I CMGCKG 2 cut(s) 11, 853
MunI CAATTG 1 cut(s) 1209
Mva1269I GAATGC 2 cut(s) 403, 1128
MvnI CGCG 1 cut(s) 853
MwoI GCNNNNNNNGC 3 cut(s) 248, 409, 1214
NdeII GATC 4 cut(s) 169, 843, 879, 1190
NlaIII CATG 8 cut(s) 170, 197, 508, 669, 736, 1273, 1301, 1306
NlaIV GGNNCC 4 cut(s) 7, 290, 991, 1350
NsbI TGCGCA 1 cut(s) 1284
OliI CACNNNNGTG 1 cut(s) 788
PaeR7I CTCGAG 1 cut(s) 1233
PagI TCATGA 2 cut(s) 166, 732
PctI GAATGC 2 cut(s) 403, 1128
PfeI GAWTC 3 cut(s) 569, 750, 919
PflMI CCANNNNNTGG 1 cut(s) 933
PkrI GCNGC 4 cut(s) 10, 268, 634, 852
PleI GAGTC 2 cut(s) 803, 989
PpsI GAGTC 2 cut(s) 803, 989
PshBI ATTAAT 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 1332
PspN4I GGNNCC 4 cut(s) 7, 290, 991, 1350
PspPI GGNCC 2 cut(s) 298, 1335
PspXI VCTCGAGB 1 cut(s) 1233
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 1190
RsaI GTAC 3 cut(s) 319, 833, 1350
RsaNI GTAC 3 cut(s) 318, 832, 1349
RseI CAYNNNNRTG 2 cut(s) 664, 788
SacII CCGCGG 1 cut(s) 854
SaqAI TTAA 5 cut(s) 162, 216, 605, 1077, 1241
SatI GCNGC 4 cut(s) 9, 267, 633, 851
Sau3AI GATC 4 cut(s) 169, 843, 879, 1190
Sau96I GGNCC 2 cut(s) 298, 1335
SchI GAGTC 2 cut(s) 804, 990
SduI GDGCHC 1 cut(s) 504
SetI ASST 9 cut(s) 19, 48, 138, 634, 830, 898, 1240, 1350, 1354
SfaNI GCATC 3 cut(s) 644, 927, 1320
SfcI CTRYAG 1 cut(s) 18
Sfr274I CTCGAG 1 cut(s) 1233
Sfr303I CCGCGG 1 cut(s) 854
SgrBI CCGCGG 1 cut(s) 854
SlaI CTCGAG 1 cut(s) 1233
SmiMI CAYNNNNRTG 2 cut(s) 664, 788
SmlI CTYRAG 6 cut(s) 47, 457, 1159, 1233, 1250, 1358
SmoI CTYRAG 6 cut(s) 47, 457, 1159, 1233, 1250, 1358
Sse9I AATT 7 cut(s) 237, 759, 997, 1023, 1209, 1224, 1371
SsiI CCGC 3 cut(s) 9, 851, 853
SspI AATATT 1 cut(s) 160
SspMI CTAG 1 cut(s) 524
TaaI ACNGT 1 cut(s) 1087
TaqI TCGA 3 cut(s) 584, 891, 1234
TasI AATT 7 cut(s) 237, 759, 997, 1023, 1209, 1224, 1371
TauI GCSGC 2 cut(s) 11, 853
TfiI GAWTC 3 cut(s) 569, 750, 919
Tru1I TTAA 5 cut(s) 162, 216, 605, 1077, 1241
Tru9I TTAA 5 cut(s) 162, 216, 605, 1077, 1241
TscAI CASTG 4 cut(s) 456, 790, 1020, 1313
TseI GCWGC 2 cut(s) 266, 632
TspDTI ATGAA 6 cut(s) 182, 695, 700, 793, 1017, 1258
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 4 cut(s) 456, 790, 1020, 1313
Van91I CCANNNNNTGG 1 cut(s) 933
VneI GTGCAC 1 cut(s) 500
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 1 cut(s) 997
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XhoI CTCGAG 1 cut(s) 1233
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.