RLG00000036230

SWR1 complex subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
77710537 .. 77719427
8891 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036230

Sequence Viewer

Length: 1296 bp
ATGTTGCAGAGGCTTAATCCTACAAACCCTTTGAGAATTGCTATCAATGCTAAGACCATAAGCGCTGCTCCTCCTCCGCCTTATTGGTTCCAACCGGCCCCAAATGTCAGAGTTGGTACTACTCTACCTTCATCTCTATCTGATTTCTCTCAGTCTCACACAACTCCTCCTCAGCGTTCTCAGCCTCGCTCTATTCCAACCCCTCAGGTTTTCGCTTTCTCTGAATTTGTTTACCAGGCAGCAATTACAACACTGAACTCAAGAGCCTACACCAACAAGATATCTTTGTTCCTTTTCATTGTGCACATGGTGGCTGCTATTGGGCTAAGGGCCTGGAGTAAAAGTCTTGGAAGTGCTTGTTTTGGATCTCTGTTTGTGCTAGCAATTGAAGCACTGAGAATTGTTGCTCGGGCTTTAAATCTACTTGAGGGCGAGGATGGGTTTATGTTTTCTTGTGCGCATTGCTTTCTCAATGTCATGCAGTGTATCTTTCGATATGGCGATGGCTGGGCCTTTGTTCAATTGTCTGATCAAATATGCTTCCTTCCCATTTTCTTCTTAGCACTTATCATTAAGTTGAGCGGTGTCATTGAATTTGTCTATAAGATATATGTTCCAACAAATCCTTCTGGTGCTGAAACACTACCACCAAGAACTGTTGTTCCACAAACTGATTTGTATATGCACAGATTATGGGGTGAACCCAGTGAGCCGGCTGTGCTCTTAGAACTCCGCTGGGAATTTGAGGAGACACCTTTACCTCTATCTACACCCGCAATGGACGATGACGTGTCCGCCCCCTTCCGCCGATCCTCGAGTCGGAATCGTAAGGTCGCTTCGAAAATGGCTGCTGCCCTTATGAGCACTGATAACCGCACCCAGGCTGCCCTTGCTAGGCTTGAAGCTTTGGAAAACGACAATGCTGGGTTGGAAACTGTGGAGGTTAATGACGACGATGAAGCTTCTCTTGATGATGAGGATCAAGGATATATACAAAAGAAGCAGCCTAAGGGCACCAAGCGTAAAACCCGGCAGGCAAAAGCTCTTGAGGCCAGGAAGGCACCCAGAACATTCCTTGAGCTTTTACATGAGGCAAATCTTGAATCTTTGCCACCTCATGTCCCCTCCTATCTGAAAGCAGCAGTGGGACCTCCAAGCTCTACCTCCCGCCGCCATTTCTGCACTGTTTGTGGTTCAGCTGCCAACTATACATGTGTGAGGTGTGGTATGCGCTTCTGTTCGTGTCGTTGTCAGAATATACACAATGATACTCGTTGTCAGAAATTTGTTGCCTGA

Protein Analysis

432

Amino Acids

47.94

Weight (kDa)

8.64

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 109 - 174 1.4e-07 Plasma-membrane choline transporter
zf-HIT PF04438 390 - 418 3.1e-09 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 459
AccB1I GGYRCC 2 cut(s) 1013, 1060
AccBSI CCGCTC 1 cut(s) 582
AciI CCGC 9 cut(s) 77, 582, 733, 774, 795, 805, 874, 1168, 1171
AclWI GGATC 3 cut(s) 373, 804, 987
AcsI RAATTY 4 cut(s) 224, 593, 740, 1283
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 1 cut(s) 118
AfeI AGCGCT 1 cut(s) 64
AfiI CCNNNNNNNGG 3 cut(s) 819, 880, 894
AflIII ACRYGT 2 cut(s) 789, 1211
AgsI TTSAA 5 cut(s) 389, 521, 593, 902, 1103
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 4 cut(s) 234, 332, 879, 1052
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AloI GAACNNNNNNTCC 2 cut(s) 646, 678
AluBI AGCT 6 cut(s) 905, 962, 1043, 1081, 1158, 1199
AluI AGCT 6 cut(s) 905, 962, 1043, 1081, 1158, 1199
Alw21I GWGCWC 3 cut(s) 306, 723, 866
Alw26I GTCTC 2 cut(s) 159, 743
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 3 cut(s) 373, 804, 987
Ama87I CYCGRG 2 cut(s) 408, 814
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 4 cut(s) 96, 330, 510, 1050
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 9 cut(s) 65, 239, 314, 848, 851, 884, 1003, 1139, 1199
ApoI RAATTY 4 cut(s) 224, 593, 740, 1283
AspLEI GCGC 3 cut(s) 65, 460, 1233
AspS9I GGNCC 4 cut(s) 97, 330, 510, 1148
AsuC2I CCSGG 1 cut(s) 1030
AsuHPI GGTGA 1 cut(s) 710
AsuII TTCGAA 1 cut(s) 839
AsuNHI GCTAGC 1 cut(s) 379
AvaI CYCGRG 2 cut(s) 408, 814
AvaII GGWCC 1 cut(s) 1148
AxyI CCTNAGG 2 cut(s) 204, 1008
BaeGI GKGCMC 2 cut(s) 306, 1016
BanI GGYRCC 2 cut(s) 1013, 1060
BarI GAAGNNNNNNTAC 2 cut(s) 820, 852
Bbv12I GWGCWC 3 cut(s) 306, 723, 866
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 9 cut(s) 52, 251, 301, 835, 838, 871, 1015, 1151, 1186
BccI CCATC 2 cut(s) 431, 497
BciT130I CCWGG 4 cut(s) 236, 334, 881, 1054
BclI TGATCA 1 cut(s) 529
BcnI CCSGG 1 cut(s) 1030
BcoDI GTCTC 2 cut(s) 159, 743
BfaI CTAG 2 cut(s) 380, 894
BfoI RGCGCY 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 1058
Bme1390I CCNGG 5 cut(s) 236, 334, 881, 1030, 1054
Bme18I GGWCC 1 cut(s) 1148
BmeT110I CYCGRG 2 cut(s) 408, 814
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 4 cut(s) 97, 330, 510, 1148
BmiI GGNNCC 5 cut(s) 89, 99, 1015, 1062, 1149
BmrFI CCNGG 5 cut(s) 236, 334, 881, 1030, 1054
BmrI ACTGGG 1 cut(s) 699
BmtI GCTAGC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 699
BpmI CTGGAG 1 cut(s) 355
Bpu10I CCTNAGC 2 cut(s) 171, 326
Bpu14I TTCGAA 1 cut(s) 839
BpuEI CTTGAG 4 cut(s) 244, 446, 1067, 1097
BpuMI CCSGG 1 cut(s) 1030
BsaBI GATNNNNATC 1 cut(s) 978
BsaJI CCNNGG 1 cut(s) 879
BsaXI ACNNNNNCTCC 4 cut(s) 151, 181, 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 819, 880, 894
Bse118I RCCGGY 2 cut(s) 94, 712
Bse1I ACTGG 1 cut(s) 705
Bse21I CCTNAGG 2 cut(s) 204, 1008
Bse3DI GCAATG 2 cut(s) 460, 783
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 4 cut(s) 236, 334, 881, 1054
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 1 cut(s) 442
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 3 cut(s) 819, 880, 894
BseMI GCAATG 2 cut(s) 460, 783
BseMII CTCAG 5 cut(s) 164, 185, 194, 218, 386
BseNI ACTGG 1 cut(s) 705
BseRI GAGGAG 5 cut(s) 60, 63, 156, 159, 761
BseSI GKGCMC 2 cut(s) 306, 1016
BseXI GCAGC 9 cut(s) 52, 251, 301, 835, 838, 871, 1015, 1151, 1186
BseYI CCCAGC 3 cut(s) 507, 735, 923
BsgI GTGCAG 1 cut(s) 1165
BshFI GGCC 4 cut(s) 98, 332, 512, 1052
BshNI GGYRCC 2 cut(s) 1013, 1060
BsiHKAI GWGCWC 3 cut(s) 306, 723, 866
BsiHKCI CYCGRG 2 cut(s) 408, 814
BsiSI CCGG 3 cut(s) 95, 713, 1030
BslFI GGGAC 2 cut(s) 1106, 1161
BslI CCNNNNNNNGG 3 cut(s) 819, 880, 894
BsmAI GTCTC 2 cut(s) 159, 743
BsmFI GGGAC 2 cut(s) 1106, 1161
BsnI GGCC 4 cut(s) 98, 332, 512, 1052
BsoBI CYCGRG 2 cut(s) 408, 814
Bsp119I TTCGAA 1 cut(s) 839
Bsp1286I GDGCHC 4 cut(s) 306, 723, 866, 1016
Bsp143I GATC 4 cut(s) 365, 529, 809, 979
BspACI CCGC 9 cut(s) 77, 582, 733, 774, 795, 805, 874, 1168, 1171
BspANI GGCC 4 cut(s) 98, 332, 512, 1052
BspCNI CTCAG 5 cut(s) 163, 184, 193, 217, 387
BspLI GGNNCC 5 cut(s) 89, 99, 1015, 1062, 1149
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 3 cut(s) 373, 804, 987
BspT104I TTCGAA 1 cut(s) 839
BspT107I GGYRCC 2 cut(s) 1013, 1060
BsrBI CCGCTC 1 cut(s) 582
BsrDI GCAATG 2 cut(s) 460, 783
BsrFI RCCGGY 2 cut(s) 94, 712
BsrI ACTGG 1 cut(s) 705
BssAI RCCGGY 2 cut(s) 94, 712
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 4 cut(s) 365, 529, 809, 979
Bst2UI CCWGG 4 cut(s) 236, 334, 881, 1054
Bst4CI ACNGT 3 cut(s) 658, 937, 1186
BstBI TTCGAA 1 cut(s) 839
BstC8I GCNNGC 3 cut(s) 381, 714, 1035
BstF5I GGATG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 3 cut(s) 65, 460, 1233
BstKTI GATC 4 cut(s) 368, 532, 812, 982
BstMAI GTCTC 2 cut(s) 159, 743
BstMBI GATC 4 cut(s) 365, 529, 809, 979
BstMWI GCNNNNNNNGC 8 cut(s) 47, 181, 389, 718, 890, 1049, 1058, 1179
BstNI CCWGG 4 cut(s) 236, 334, 881, 1054
BstNSI RCATGY 1 cut(s) 1215
BstSCI CCNGG 5 cut(s) 234, 332, 879, 1028, 1052
BstSLI GKGCMC 2 cut(s) 306, 1016
BstV1I GCAGC 9 cut(s) 52, 251, 301, 835, 838, 871, 1015, 1151, 1186
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
Bsu36I CCTNAGG 2 cut(s) 204, 1008
BsuRI GGCC 4 cut(s) 98, 332, 512, 1052
BtgZI GCGATG 1 cut(s) 516
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 2 cut(s) 488, 1149
BtsIMutI CAGTG 7 cut(s) 251, 392, 488, 712, 864, 1149, 1182
Cac8I GCNNGC 3 cut(s) 381, 714, 1035
CfoI GCGC 3 cut(s) 65, 460, 1233
Cfr10I RCCGGY 2 cut(s) 94, 712
Cfr13I GGNCC 4 cut(s) 97, 330, 510, 1148
Csp6I GTAC 1 cut(s) 117
CviAII CATG 5 cut(s) 307, 478, 1088, 1118, 1212
CviQI GTAC 1 cut(s) 117
DpnI GATC 4 cut(s) 367, 531, 811, 981
DpnII GATC 4 cut(s) 365, 529, 809, 979
DraI TTTAAA 1 cut(s) 417
DraIII CACNNNGTG 1 cut(s) 310
EciI GGCGGA 3 cut(s) 66, 784, 794
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 1148
Eco47III AGCGCT 1 cut(s) 64
Eco81I CCTNAGG 2 cut(s) 204, 1008
Eco88I CYCGRG 2 cut(s) 408, 814
EcoO109I RGGNCCY 2 cut(s) 330, 1148
EcoRII CCWGG 4 cut(s) 234, 332, 879, 1052
EcoRV GATATC 1 cut(s) 282
FaeI CATG 5 cut(s) 310, 481, 1091, 1121, 1215
FalI AAGNNNNNCTT 2 cut(s) 951, 983
FaqI GGGAC 2 cut(s) 1106, 1161
FatI CATG 5 cut(s) 306, 477, 1087, 1117, 1211
FauI CCCGC 2 cut(s) 781, 1175
FbaI TGATCA 1 cut(s) 529
FokI GGATG 1 cut(s) 449
FspAI RTGCGCAY 1 cut(s) 459
FspBI CTAG 2 cut(s) 380, 894
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 3 cut(s) 64, 459, 1232
GsaI CCCAGC 3 cut(s) 511, 739, 927
GsuI CTGGAG 1 cut(s) 355
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 4 cut(s) 98, 332, 512, 1052
HapII CCGG 3 cut(s) 95, 713, 1030
HhaI GCGC 3 cut(s) 65, 460, 1233
Hin1II CATG 5 cut(s) 310, 481, 1091, 1121, 1215
Hin6I GCGC 3 cut(s) 63, 458, 1231
HinP1I GCGC 3 cut(s) 63, 458, 1231
HindIII AAGCTT 2 cut(s) 903, 960
HinfI GANTC 3 cut(s) 817, 823, 1103
HpaII CCGG 3 cut(s) 95, 713, 1030
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 3 cut(s) 232, 304, 701
Hpy188I TCNGA 8 cut(s) 110, 142, 223, 529, 822, 1134, 1254, 1281
Hpy188III TCNNGA 4 cut(s) 261, 968, 1046, 1100
Hpy8I GTNNAC 3 cut(s) 232, 304, 701
Hpy99I CGWCG 1 cut(s) 956
HpyAV CCTTC 5 cut(s) 138, 554, 636, 811, 1051
HpyCH4III ACNGT 3 cut(s) 658, 937, 1186
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 5 cut(s) 7, 304, 481, 685, 1182
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 181, 389, 718, 890, 1049, 1058, 1179
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 5 cut(s) 310, 481, 1091, 1121, 1215
HspAI GCGC 3 cut(s) 63, 458, 1231
KroI GCCGGC 1 cut(s) 712
KroNI GCCGGC 1 cut(s) 714
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 4 cut(s) 365, 529, 809, 979
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 9 cut(s) 52, 251, 301, 835, 838, 871, 1015, 1151, 1186
MaeI CTAG 2 cut(s) 380, 894
MaeII ACGT 1 cut(s) 789
MalI GATC 4 cut(s) 367, 531, 811, 981
MbiI CCGCTC 1 cut(s) 582
MboI GATC 4 cut(s) 365, 529, 809, 979
MboII GAAGA 1 cut(s) 547
MfeI CAATTG 2 cut(s) 384, 521
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 4 cut(s) 306, 723, 866, 1016
MluCI AATT 9 cut(s) 36, 224, 243, 384, 399, 521, 593, 740, 1283
MlyI GAGTC 1 cut(s) 826
MmeI TCCRAC 5 cut(s) 115, 221, 641, 800, 909
MroNI GCCGGC 1 cut(s) 712
MseI TTAA 4 cut(s) 15, 416, 573, 945
MspA1I CMGCKG 2 cut(s) 735, 1199
MspI CCGG 3 cut(s) 95, 713, 1030
MspR9I CCNGG 5 cut(s) 236, 334, 881, 1030, 1054
MunI CAATTG 2 cut(s) 384, 521
MvaI CCWGG 4 cut(s) 236, 334, 881, 1054
MwoI GCNNNNNNNGC 8 cut(s) 47, 181, 389, 718, 890, 1049, 1058, 1179
NaeI GCCGGC 1 cut(s) 714
NciI CCSGG 1 cut(s) 1030
NdeII GATC 4 cut(s) 365, 529, 809, 979
NgoMIV GCCGGC 1 cut(s) 712
NheI GCTAGC 1 cut(s) 379
NlaIII CATG 5 cut(s) 310, 481, 1091, 1121, 1215
NlaIV GGNNCC 5 cut(s) 89, 99, 1015, 1062, 1149
NsbI TGCGCA 1 cut(s) 459
NspI RCATGY 1 cut(s) 1215
NspV TTCGAA 1 cut(s) 839
PaeR7I CTCGAG 1 cut(s) 814
PciI ACATGT 1 cut(s) 1211
PdiI GCCGGC 1 cut(s) 714
PfeI GAWTC 2 cut(s) 823, 1103
PleI GAGTC 1 cut(s) 825
PpsI GAGTC 1 cut(s) 825
PpuMI RGGWCCY 1 cut(s) 1148
PscI ACATGT 1 cut(s) 1211
Psp5II RGGWCCY 1 cut(s) 1148
Psp6I CCWGG 4 cut(s) 234, 332, 879, 1052
PspFI CCCAGC 3 cut(s) 507, 735, 923
PspGI CCWGG 4 cut(s) 234, 332, 879, 1052
PspN4I GGNNCC 5 cut(s) 89, 99, 1015, 1062, 1149
PspPI GGNCC 4 cut(s) 97, 330, 510, 1148
PspPPI RGGWCCY 1 cut(s) 1148
PspXI VCTCGAGB 1 cut(s) 814
PsuI RGATCY 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 1199
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SaqAI TTAA 4 cut(s) 15, 416, 573, 945
Sau3AI GATC 4 cut(s) 365, 529, 809, 979
Sau96I GGNCC 4 cut(s) 97, 330, 510, 1148
SchI GAGTC 1 cut(s) 826
ScrFI CCNGG 5 cut(s) 236, 334, 881, 1030, 1054
SduI GDGCHC 4 cut(s) 306, 723, 866, 1016
Sfr274I CTCGAG 1 cut(s) 814
SfuI TTCGAA 1 cut(s) 839
SinI GGWCC 1 cut(s) 1148
SlaI CTCGAG 1 cut(s) 814
SmlI CTYRAG 5 cut(s) 259, 425, 814, 1046, 1076
SmoI CTYRAG 5 cut(s) 259, 425, 814, 1046, 1076
Sse9I AATT 9 cut(s) 36, 224, 243, 384, 399, 521, 593, 740, 1283
SsiI CCGC 9 cut(s) 77, 582, 733, 774, 795, 805, 874, 1168, 1171
SspMI CTAG 2 cut(s) 380, 894
StyD4I CCNGG 5 cut(s) 234, 332, 879, 1028, 1052
TaaI ACNGT 3 cut(s) 658, 937, 1186
TaiI ACGT 1 cut(s) 792
TaqI TCGA 3 cut(s) 493, 815, 839
TasI AATT 9 cut(s) 36, 224, 243, 384, 399, 521, 593, 740, 1283
TauI GCSGC 1 cut(s) 1173
TfiI GAWTC 2 cut(s) 823, 1103
Tru1I TTAA 4 cut(s) 15, 416, 573, 945
Tru9I TTAA 4 cut(s) 15, 416, 573, 945
TscAI CASTG 7 cut(s) 258, 399, 488, 712, 871, 1149, 1189
TseI GCWGC 9 cut(s) 65, 239, 314, 848, 851, 884, 1003, 1139, 1199
TspDTI ATGAA 3 cut(s) 120, 286, 972
TspRI CASTG 7 cut(s) 258, 399, 488, 712, 871, 1149, 1189
VneI GTGCAC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 1148
XapI RAATTY 4 cut(s) 224, 593, 740, 1283
XceI RCATGY 1 cut(s) 1215
XhoI CTCGAG 1 cut(s) 814
XspI CTAG 2 cut(s) 380, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.