Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002251

Physical Location & Seq

Genomic Coordinates Reverse (-)

44911799 .. 44913258

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTGCGAGGTCTTCTGCGACGAGGTCCCTAAAACCGCCAAAAGGCTTAATCCTACAAACCCTTTGAGAATTGCTATCAATGCTAAGACCATAAGCGCTGCTCCTCCTCCTTCTTATCGGTTCCAATCGGCCCAAAATGTCAGAGTTGGTACTAATCCACCTTCATCTCTATCTGATTTCTCTCAGTCTCACACAATTCCTCCTCAGCATTCTCAGCCTCGCTCTATTCCAACCTCTCAGCCAGCGATTACAACACTGAACTCAAGAGCCTACACCAACAAGATATCTTTGTTCCTTTTCGTTGTGCACATGGTGGCTGCTATTGGGCTAGTTGGTTTTCTGATATTAGCCGAAGTAATGAGGAATGTAGTTAATAGAACTTGTGAGAAGGGTGATTTCTCTATATTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

137

Amino Acids

14.98

Weight (kDa)

9.73

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13760
fragaria_vesca	FvH4_5g01450 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810
malus_domestica	MD02G1300300.v1.1 MD07G1024500.v1.1
prunus_persica	Prupe.2G024300_v2.0.a1
pyrus_communis	pycom02g25230 pycom07g01900
rosa_chinensis	RchiOBHm_Chr1g0318441 RchiOBHm_Chr2g0108781 RchiOBHm_Chr2g0108791 RchiOBHm_Chr3g0495071
rosa_laevigata	RLG00000001167 RLG00000030537 RLG00000036230
rosa_multiflora	Rmu_sc0003936.1_g000042
rosa_roxburghii	Rroxscaffold_2G00099340 Rroxscaffold_3G00250150 Rroxscaffold_4G00329250 Rroxscaffold_7G00170850 Rroxscaffold_7G00196360
rosa_rugosa	Rorug01G0021200 Rorug01G0021300
rosa_samantha	Rh1AG033300 Rh1BG029400 Rh1CG031700 Rh1CG032900 Rh1DG037600 Rh1DG037800 Rh2AG206300 Rh2BG217600 Rh2CG209200 Rh2DG212500 Rh3AG318700 Rh3CG351300 Rh5AG311200 Rh5AG311300
rosa_wichuraiana	Rw1G002670 Rw5G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	151
AfeI	AGCGCT	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	305
Aor51HI	AGCGCT	1 cut(s)	97
AoxI	GGCC	1 cut(s)	129
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	98, 317
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	25, 130
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	85, 304
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	329
BfoI	RGCGCY	1 cut(s)	99
BisI	GCNGC	2 cut(s)	99, 318
BlsI	GCNGC	2 cut(s)	100, 319
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 130
BmiI	GGNNCC	2 cut(s)	27, 122
BpiI	GAAGAC	1 cut(s)	4
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	4 cut(s)	197, 218, 227, 251
BseRI	GAGGAG	3 cut(s)	93, 96, 192
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	85, 304
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	309
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	4 cut(s)	196, 217, 226, 250
BspLI	GGNNCC	2 cut(s)	27, 122
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	6 cut(s)	84, 183, 204, 213, 237, 411
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 214
BstSLI	GKGCMC	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	85, 304
BstV2I	GAAGAC	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	25, 130
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	8 cut(s)	46, 131, 217, 241, 269, 317, 328, 350
CviKI_1	RGCY	8 cut(s)	46, 131, 217, 241, 269, 317, 328, 350
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	6 cut(s)	84, 183, 204, 213, 237, 411
DraIII	CACNNNGTG	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	25
Eco47III	AGCGCT	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	285
FaeI	CATG	1 cut(s)	313
FaiI	YATR	3 cut(s)	92, 311, 404
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	99, 318
Fsp4HI	GCNGC	2 cut(s)	99, 318
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	2 cut(s)	99, 318
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	143, 175, 342
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	120, 171, 382
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 214
HpyF3I	CTNAG	6 cut(s)	84, 183, 204, 213, 237, 411
Hsp92II	CATG	1 cut(s)	313
HspAI	GCGC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	1 cut(s)	255
Lsp1109I	GCAGC	2 cut(s)	85, 304
MaeI	CTAG	1 cut(s)	329
MboII	GAAGA	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	69, 195
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	16, 114, 117, 210, 213, 228, 244, 354
MseI	TTAA	2 cut(s)	48, 372
Mva1269I	GAATGC	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	80, 214
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	27, 122
PctI	GAATGC	1 cut(s)	208
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	100, 319
PpuMI	RGGWCCY	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	27, 122
PspPI	GGNCC	2 cut(s)	25, 130
PspPPI	RGGWCCY	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	48, 372
SatI	GCNGC	2 cut(s)	99, 318
Sau96I	GGNCC	2 cut(s)	25, 130
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	4 cut(s)	12, 27, 163, 236
SgeI	CNNG	9 cut(s)	19, 34, 231, 254, 276, 292, 322, 341, 393
SinI	GGWCC	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	2 cut(s)	69, 195
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	329
TasI	AATT	2 cut(s)	69, 195
Tru1I	TTAA	2 cut(s)	48, 372
Tru9I	TTAA	2 cut(s)	48, 372
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	2 cut(s)	98, 317
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	261
Tth111I	GACNNNGTC	1 cut(s)	23
VneI	GTGCAC	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.