Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002251

Physical Location & Seq

Genomic Coordinates Forward (+)

20488645 .. 20494129

Gene Structure 5485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG209200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTACGAGGTCTTCTGCGACGAGCTCCCTAAAACCACCAAGAGGCTTAATCCTACAAACCCTTTGAGAATTGCTGTCAATGCTAAGACCATAAGTGCTGCTCCTCCTCCTCCTTATCGGTTCCAACTGGCCCAAAATGTCAGAGTTGGTACTACTCCACCTTCATCTCTATCTGAATTCTCTCAGTCTCACACAACTCCTCCTCAGCATTCTCAGCCTCGCACTATTCCAACCCCTCAGGCAGCAATTACAACACTGAACTCAAGAGCCTACACCAACAAGATATCTTTGTTCCTTTTCATTGTGCACATGGTGGCTGCTATTGGGCTAGTTGCACTGAGAATTGTTGCTCAGGCTTTAAATCAACTTGAGGGCGAGGATGGGTTTATGTTGTCTTCTGCGCATTGCTTTCTCAATGTCATGCAGTGCATCTTTCGATATGGCGATGGCTGGGCCTTTGTTCAGATATATATTCCAACAAATCCTTCTGGTGCTGAAACACTACCACCAGGAATTGTTGTTCCACAAACTGATTTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

180

Amino Acids

19.77

Weight (kDa)

8.52

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13760
fragaria_vesca	FvH4_5g01450 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810
malus_domestica	MD02G1300300.v1.1 MD07G1024500.v1.1
prunus_persica	Prupe.2G024300_v2.0.a1
pyrus_communis	pycom02g25230 pycom07g01900
rosa_chinensis	RchiOBHm_Chr1g0318441 RchiOBHm_Chr2g0108781 RchiOBHm_Chr2g0108791 RchiOBHm_Chr3g0495071
rosa_laevigata	RLG00000001167 RLG00000030537 RLG00000036230
rosa_multiflora	Rmu_sc0003936.1_g000042
rosa_roxburghii	Rroxscaffold_2G00099340 Rroxscaffold_3G00250150 Rroxscaffold_4G00329250 Rroxscaffold_7G00170850 Rroxscaffold_7G00196360
rosa_rugosa	Rorug01G0021200 Rorug01G0021300
rosa_samantha	Rh1AG033300 Rh1BG029400 Rh1CG031700 Rh1CG032900 Rh1DG037600 Rh1DG037800 Rh2AG206300 Rh2BG217600 Rh2CG209200 Rh2DG212500 Rh3AG318700 Rh3CG351300 Rh5AG311200 Rh5AG311300
rosa_wichuraiana	Rw1G002670 Rw5G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	176
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	2 cut(s)	5, 151
AfiI	CCNNNNNNNGG	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AloI	GAACNNNNNNTCC	2 cut(s)	504, 536
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	2 cut(s)	27, 309
Alw26I	GTCTC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	305
AoxI	GGCC	2 cut(s)	129, 453
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	3 cut(s)	98, 242, 317
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	130, 453
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	27
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbsI	GAAGAC	2 cut(s)	4, 387
Bbv12I	GWGCWC	2 cut(s)	27, 309
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	85, 254, 304
BccI	CCATC	2 cut(s)	374, 440
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	3 cut(s)	99, 243, 318
BlsI	GCNGC	3 cut(s)	100, 244, 319
Bme1390I	CCNGG	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	130, 453
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	438
BpiI	GAAGAC	2 cut(s)	4, 387
Bpu10I	CCTNAGC	2 cut(s)	204, 351
BpuEI	CTTGAG	2 cut(s)	247, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	132
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	510
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	6 cut(s)	197, 218, 227, 251, 329, 365
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	5 cut(s)	93, 96, 99, 189, 192
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	3 cut(s)	85, 254, 304
BseYI	CCCAGC	1 cut(s)	450
BshFI	GGCC	2 cut(s)	131, 455
BsiHKAI	GWGCWC	2 cut(s)	27, 309
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	131, 455
Bsp1286I	GDGCHC	2 cut(s)	27, 309
BspANI	GGCC	2 cut(s)	131, 455
BspCNI	CTCAG	6 cut(s)	196, 217, 226, 250, 330, 364
BspLI	GGNNCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	510
BstDEI	CTNAG	7 cut(s)	84, 183, 204, 213, 237, 338, 351
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 214
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	85, 254, 304
BstV2I	GAAGAC	2 cut(s)	4, 387
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	131, 455
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	3 cut(s)	254, 335, 431
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	130, 453
Csp6I	GTAC	2 cut(s)	4, 150
CviAII	CATG	2 cut(s)	310, 421
CviQI	GTAC	2 cut(s)	4, 150
DdeI	CTNAG	7 cut(s)	84, 183, 204, 213, 237, 338, 351
DraI	TTTAAA	1 cut(s)	360
DraIII	CACNNNGTG	1 cut(s)	313
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	2 cut(s)	313, 424
FaiI	YATR	7 cut(s)	92, 311, 389, 422, 441, 469, 471
FatI	CATG	2 cut(s)	309, 420
Fnu4HI	GCNGC	3 cut(s)	99, 243, 318
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	99, 243, 318
FspBI	CTAG	1 cut(s)	329
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	3 cut(s)	99, 243, 318
GsaI	CCCAGC	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	131, 455
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	313, 424
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	143, 175, 465
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	171, 495
HpyCH4V	TGCA	4 cut(s)	307, 335, 424, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 214
HpyF3I	CTNAG	7 cut(s)	84, 183, 204, 213, 237, 338, 351
Hsp92II	CATG	2 cut(s)	313, 424
HspAI	GCGC	1 cut(s)	401
LmnI	GCTCC	2 cut(s)	30, 106
LpnPI	CCDG	7 cut(s)	113, 224, 338, 436, 474, 495, 522
Lsp1109I	GCAGC	3 cut(s)	85, 254, 304
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	329
MboII	GAAGA	2 cut(s)	4, 387
MhlI	GDGCHC	2 cut(s)	27, 309
MluCI	AATT	5 cut(s)	69, 176, 246, 342, 513
MmeI	TCCRAC	3 cut(s)	148, 254, 500
MseI	TTAA	2 cut(s)	48, 359
MspR9I	CCNGG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	80, 214
NlaIII	CATG	2 cut(s)	313, 424
NlaIV	GGNNCC	1 cut(s)	122
NsbI	TGCGCA	1 cut(s)	402
PctI	GAATGC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	100, 244, 319
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	2 cut(s)	130, 453
RsaI	GTAC	2 cut(s)	5, 151
RsaNI	GTAC	2 cut(s)	4, 150
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	48, 359
SatI	GCNGC	3 cut(s)	99, 243, 318
Sau96I	GGNCC	2 cut(s)	130, 453
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	27, 309
SetI	ASST	3 cut(s)	12, 27, 163
SfaNI	GCATC	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	262, 368
SmoI	CTYRAG	2 cut(s)	262, 368
Sse9I	AATT	5 cut(s)	69, 176, 246, 342, 513
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	508
TaqI	TCGA	1 cut(s)	436
TasI	AATT	5 cut(s)	69, 176, 246, 342, 513
Tru1I	TTAA	2 cut(s)	48, 359
Tru9I	TTAA	2 cut(s)	48, 359
TscAI	CASTG	3 cut(s)	261, 342, 431
TseI	GCWGC	3 cut(s)	98, 242, 317
TspDTI	ATGAA	2 cut(s)	153, 289
TspRI	CASTG	3 cut(s)	261, 342, 431
VneI	GTGCAC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	176
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.