Rh3AG318700

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002251
Physical Location & Seq
Reverse (-)
44072228 .. 44072733
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG318700.1

Sequence Viewer

Length: 342 bp
ATGTTGCAGAGGCTTAATCCTACAAACCCTTTGAGAATTGCTATCAATGCTAAGACCATAAGCGCTGCTCCTCCTCCTCCTTATCGGTTCCAACCGGCCCAAAATGTCAGAGTTGGTACTACTTCACCTTCATCTCTATCTGATTTCTCTCAGTCTCACACAACTCCTCCTCAGCATTCTCAGCCTCGCTCTAATCCAACCCCTCAAGAAGCGATTACAACACTAAACTCAAGAGCCTACACCAACAAGATATCTTTGTTCCTTTTCATTGTGCACATGGTGGCTGCTATTGGGCTAGTTGGTTTTCTAATACTTAGCCAAAGTAATGAGGAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

113

Amino Acids

12.33

Weight (kDa)

10.01

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 1 cut(s) 118
AfeI AGCGCT 1 cut(s) 64
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 159
Alw44I GTGCAC 1 cut(s) 272
Aor51HI AGCGCT 1 cut(s) 64
AoxI GGCC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 65, 284
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 52, 271
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 2 cut(s) 66, 285
BlsI GCNGC 2 cut(s) 67, 286
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 189, 214
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse118I RCCGGY 1 cut(s) 94
BseMII CTCAG 3 cut(s) 164, 185, 194
BseRI GAGGAG 5 cut(s) 60, 63, 66, 156, 159
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 2 cut(s) 52, 271
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 276
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 3 cut(s) 163, 184, 193
BspLI GGNNCC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BstDEI CTNAG 5 cut(s) 51, 150, 171, 180, 314
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 47, 181
BstSLI GKGCMC 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 52, 271
BsuRI GGCC 1 cut(s) 98
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 117
CviAII CATG 1 cut(s) 277
CviJI RGCY 8 cut(s) 13, 98, 184, 236, 284, 295, 318, 339
CviKI_1 RGCY 8 cut(s) 13, 98, 184, 236, 284, 295, 318, 339
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 5 cut(s) 51, 150, 171, 180, 314
DraIII CACNNNGTG 1 cut(s) 280
Eco32I GATATC 1 cut(s) 252
Eco47III AGCGCT 1 cut(s) 64
EcoRV GATATC 1 cut(s) 252
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 59, 278
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 66, 285
Fsp4HI GCNGC 2 cut(s) 66, 285
FspBI CTAG 1 cut(s) 296
GlaI GCGC 1 cut(s) 64
GluI GCNGC 2 cut(s) 66, 285
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 65
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 110, 142
Hpy188III TCNNGA 2 cut(s) 206, 231
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 7, 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 181
HpyF3I CTNAG 5 cut(s) 51, 150, 171, 180, 314
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 63
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 1 cut(s) 108
Lsp1109I GCAGC 2 cut(s) 52, 271
MaeI CTAG 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 2 cut(s) 115, 221
MnlI CCTC 9 cut(s) 3, 81, 84, 87, 177, 180, 195, 213, 322
MseI TTAA 1 cut(s) 15
MspI CCGG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 47, 181
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 89
PctI GAATGC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 67, 286
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 97
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 66, 285
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 276
SetI ASST 2 cut(s) 130, 341
SgeI CNNG 7 cut(s) 107, 198, 218, 243, 259, 289, 308
SmlI CTYRAG 2 cut(s) 204, 229
SmoI CTYRAG 2 cut(s) 204, 229
Sse9I AATT 1 cut(s) 36
SspMI CTAG 1 cut(s) 296
TasI AATT 1 cut(s) 36
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 2 cut(s) 65, 284
TspDTI ATGAA 2 cut(s) 120, 256
VneI GTGCAC 1 cut(s) 272
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.