Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002251

Physical Location & Seq

Genomic Coordinates Forward (+)

11215499 .. 11217507

Gene Structure 2009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTTGCAGAGGCTTAATCCTACAAACCCTTTGAGAATTGCTATCAATGCTAAGACCATAAGCGCTGCTCCTCCTCCTCCTTATTGGTTCCAACCGGCCCCAAATGTCAGAGTTGGTACTACTCCACCTTTATCTCTATCTGATTTCTCTCAGTCTCACACAACTCCTCCTCAGCATTCTCAGCCTCGCTCTATTCCAACCCCTCAGGTTTTCGCTTTCTCTGAATTTGTTTACCAGGCAGCAATTACAACATTGAACTCAAGAGCCTACACCAACAAGATATCTTTGTTCCTTTTCATTGTGCACATGGTGGCTGCTATTGGGCTAAGAGCCTGGAGTAAAAGTCTTGGAAGTGCTTGTTTTGGATCTCTGTTTGTGCTAGCAATTGAAGCACTGAGAATTGTTGCTCGGGCTTTAAATCTACTTGAGGGCGAGGATGGGTTTATGTTTTCTTGTGCGCATTGCTTTCTCAATGTCATGCAGTGCATCTTTCGATATGGCGATGTCTGGGCCTTTGTTCAGATATATGTTCCAACAAATCCTTCTGGTGCTGAAACACTACCACCAAGAACTGTTGTTCCACAAACTGATTTGTATATGCACAGATTATGGGGTGAATCCAGTGAGGTTTGTGAAATGTCTTACTATGATACTTTTGAATCTGCAGGATCTAAAAACCAGCCAAAGTACTTGGAAACATTTACCGTTGGTATTAATCAGAAGAAAAATATTGATGCAGCAGTTAAAATTAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

253

Amino Acids

28.04

Weight (kDa)

8.59

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_transpo	PF04515	109 - 175	2.5e-08	Plasma-membrane choline transporter
DUF707	PF05212	179 - 249	1.3e-07	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13760
fragaria_vesca	FvH4_5g01450 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810
malus_domestica	MD02G1300300.v1.1 MD07G1024500.v1.1
prunus_persica	Prupe.2G024300_v2.0.a1
pyrus_communis	pycom02g25230 pycom07g01900
rosa_chinensis	RchiOBHm_Chr1g0318441 RchiOBHm_Chr2g0108781 RchiOBHm_Chr2g0108791 RchiOBHm_Chr3g0495071
rosa_laevigata	RLG00000001167 RLG00000030537 RLG00000036230
rosa_multiflora	Rmu_sc0003936.1_g000042
rosa_roxburghii	Rroxscaffold_2G00099340 Rroxscaffold_3G00250150 Rroxscaffold_4G00329250 Rroxscaffold_7G00170850 Rroxscaffold_7G00196360
rosa_rugosa	Rorug01G0021200 Rorug01G0021300
rosa_samantha	Rh1AG033300 Rh1BG029400 Rh1CG031700 Rh1CG032900 Rh1DG037600 Rh1DG037800 Rh2AG206300 Rh2BG217600 Rh2CG209200 Rh2DG212500 Rh3AG318700 Rh3CG351300 Rh5AG311200 Rh5AG311300
rosa_wichuraiana	Rw1G002670 Rw5G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	459
AclWI	GGATC	2 cut(s)	373, 676
AcsI	RAATTY	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	2 cut(s)	118, 689
AfeI	AGCGCT	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	256, 389, 659
AjnI	CCWGG	2 cut(s)	234, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AloI	GAACNNNNNNTCC	2 cut(s)	562, 594
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	1 cut(s)	159
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	373, 676
Ama87I	CYCGRG	1 cut(s)	408
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	2 cut(s)	96, 510
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	65, 239, 314, 737
ApoI	RAATTY	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	714
AspLEI	GCGC	2 cut(s)	65, 460
AspS9I	GGNCC	2 cut(s)	97, 510
AsuHPI	GGTGA	1 cut(s)	626
AsuNHI	GCTAGC	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	408
AxyI	CCTNAGG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	4 cut(s)	52, 251, 301, 749
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	236, 334
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	66
BisI	GCNGC	4 cut(s)	66, 240, 315, 738
BlsI	GCNGC	4 cut(s)	67, 241, 316, 739
BmcAI	AGTACT	1 cut(s)	689
Bme1390I	CCNGG	2 cut(s)	236, 334
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	97, 510
BmiI	GGNNCC	2 cut(s)	89, 99
BmrFI	CCNGG	2 cut(s)	236, 334
BmsI	GCATC	2 cut(s)	495, 724
BmtI	GCTAGC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	355
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	244, 446
BsaXI	ACNNNNNCTCC	4 cut(s)	151, 181, 328, 358
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	621
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	2 cut(s)	236, 334
BseGI	GGATG	1 cut(s)	442
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	5 cut(s)	164, 185, 194, 218, 386
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	5 cut(s)	60, 63, 66, 156, 159
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	4 cut(s)	52, 251, 301, 749
BshFI	GGCC	2 cut(s)	98, 512
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	98, 512
BsoBI	CYCGRG	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	365, 668
BspANI	GGCC	2 cut(s)	98, 512
BspCNI	CTCAG	5 cut(s)	163, 184, 193, 217, 387
BspLI	GGNNCC	2 cut(s)	89, 99
BspMAI	CTGCAG	1 cut(s)	667
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	373, 676
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	2 cut(s)	365, 668
Bst2UI	CCWGG	2 cut(s)	236, 334
Bst4CI	ACNGT	2 cut(s)	574, 706
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	7 cut(s)	51, 150, 171, 180, 204, 326, 395
BstF5I	GGATG	1 cut(s)	442
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 460
BstKTI	GATC	2 cut(s)	368, 671
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	365, 668
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 181, 389
BstNI	CCWGG	2 cut(s)	236, 334
BstSCI	CCNGG	2 cut(s)	234, 332
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	52, 251, 301, 749
BstX2I	RGATCY	2 cut(s)	365, 668
BstYI	RGATCY	2 cut(s)	365, 668
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	98, 512
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	3 cut(s)	392, 488, 628
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	2 cut(s)	65, 460
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	97, 510
Csp6I	GTAC	2 cut(s)	117, 688
CviAII	CATG	2 cut(s)	307, 478
CviQI	GTAC	2 cut(s)	117, 688
DdeI	CTNAG	7 cut(s)	51, 150, 171, 180, 204, 326, 395
DpnI	GATC	2 cut(s)	367, 670
DpnII	GATC	2 cut(s)	365, 668
DraI	TTTAAA	1 cut(s)	417
DraIII	CACNNNGTG	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	282
Eco47III	AGCGCT	1 cut(s)	64
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	234, 332
EcoRV	GATATC	1 cut(s)	282
FaeI	CATG	2 cut(s)	310, 481
FatI	CATG	2 cut(s)	306, 477
Fnu4HI	GCNGC	4 cut(s)	66, 240, 315, 738
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	4 cut(s)	66, 240, 315, 738
FspAI	RTGCGCAY	1 cut(s)	459
FspBI	CTAG	1 cut(s)	380
FspI	TGCGCA	1 cut(s)	459
GlaI	GCGC	2 cut(s)	64, 459
GluI	GCNGC	4 cut(s)	66, 240, 315, 738
GsuI	CTGGAG	1 cut(s)	355
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	98, 512
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	2 cut(s)	65, 460
Hin1II	CATG	2 cut(s)	310, 481
Hin6I	GCGC	2 cut(s)	63, 458
HinP1I	GCGC	2 cut(s)	63, 458
HinfI	GANTC	2 cut(s)	617, 659
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	2 cut(s)	232, 304
Hpy188I	TCNGA	5 cut(s)	110, 142, 223, 522, 720
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	2 cut(s)	232, 304
HpyAV	CCTTC	1 cut(s)	552
HpyCH4III	ACNGT	2 cut(s)	574, 706
HpyCH4V	TGCA	7 cut(s)	7, 304, 481, 486, 601, 665, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 181, 389
HpyF3I	CTNAG	7 cut(s)	51, 150, 171, 180, 204, 326, 395
Hsp92II	CATG	2 cut(s)	310, 481
HspAI	GCGC	2 cut(s)	63, 458
Kzo9I	GATC	2 cut(s)	365, 668
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	4 cut(s)	52, 251, 301, 749
LweI	GCATC	2 cut(s)	495, 724
MaeI	CTAG	1 cut(s)	380
MalI	GATC	2 cut(s)	367, 670
MboI	GATC	2 cut(s)	365, 668
MboII	GAAGA	1 cut(s)	733
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	2 cut(s)	365, 668
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	7 cut(s)	36, 224, 243, 384, 399, 747, 754
MmeI	TCCRAC	3 cut(s)	115, 221, 557
MseI	TTAA	6 cut(s)	15, 416, 714, 744, 750, 757
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	236, 334
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	2 cut(s)	236, 334
MwoI	GCNNNNNNNGC	3 cut(s)	47, 181, 389
NdeII	GATC	2 cut(s)	365, 668
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	310, 481
NlaIV	GGNNCC	2 cut(s)	89, 99
NsbI	TGCGCA	1 cut(s)	459
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	617, 659
PkrI	GCNGC	4 cut(s)	67, 241, 316, 739
PshBI	ATTAAT	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	234, 332
PspGI	CCWGG	2 cut(s)	234, 332
PspN4I	GGNNCC	2 cut(s)	89, 99
PspPI	GGNCC	2 cut(s)	97, 510
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	2 cut(s)	365, 668
RsaI	GTAC	2 cut(s)	118, 689
RsaNI	GTAC	2 cut(s)	117, 688
SaqAI	TTAA	6 cut(s)	15, 416, 714, 744, 750, 757
SatI	GCNGC	4 cut(s)	66, 240, 315, 738
Sau3AI	GATC	2 cut(s)	365, 668
Sau96I	GGNCC	2 cut(s)	97, 510
ScaI	AGTACT	1 cut(s)	689
ScrFI	CCNGG	2 cut(s)	236, 334
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	3 cut(s)	130, 210, 630
SfaNI	GCATC	2 cut(s)	495, 724
SfcI	CTRYAG	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	259, 425
SmoI	CTYRAG	2 cut(s)	259, 425
Sse9I	AATT	7 cut(s)	36, 224, 243, 384, 399, 747, 754
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	234, 332
TaaI	ACNGT	2 cut(s)	574, 706
TaqI	TCGA	1 cut(s)	493
TasI	AATT	7 cut(s)	36, 224, 243, 384, 399, 747, 754
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	617, 659
Tru1I	TTAA	6 cut(s)	15, 416, 714, 744, 750, 757
Tru9I	TTAA	6 cut(s)	15, 416, 714, 744, 750, 757
TscAI	CASTG	3 cut(s)	399, 488, 628
TseI	GCWGC	4 cut(s)	65, 239, 314, 737
TspDTI	ATGAA	1 cut(s)	286
TspRI	CASTG	3 cut(s)	399, 488, 628
VneI	GTGCAC	1 cut(s)	302
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.