Rh1CG031700

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002251
Physical Location & Seq
Reverse (-)
6255859 .. 6259535
3677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG031700.1

Sequence Viewer

Length: 1371 bp
ATGGGTGCCGCTGAACCCGTAGTGGTGGAGAGAGAAAGTGAAGAGGTTGAGGCGAGGGAGAGAGATGAGAGGGAGGAGGAGGAAGAGGAGGAGGAGAGGAGAGAGCTGGAAGTGAGAGATATGGAGAAAGTTGAGGTGTTGGGTTTTGAACAACAGAGCAATATTAATCATGATCGGAGTAGTCAGGGAGATGTTCATGTGTCAATGTTGCAGAGGCTTAATCCTACAAACCCTTTGAGAATTGCTATCAATACTAAAACCAGAAGCGCTGCTCCTCCTCCTCCTCCTCATCGGTTCCAACAGGCCCAGAATGTCAGAGTTGGTACTACTCCATCTCCATCTCTATCTGATTTCTCTCAGTCTCACACAACTCCTCCTCCTCCTCCTCAGCATTCTCAGCCTCGCTCTACTCCAACCCCTCAACCAGCGATTACAACGCTGAACTCAAGAGCCTACACCAACAAGATATCTTTGTTCCTTTTCGTTGTGCACATGGTCGGCGCTGTTGGGCTAGTTGGTTTTCTGACATTCAAGGGAGTTCAGGGTCTGATACAAGATTCAGGCAGTATTTCGAGAAAGGAGAAAAGGGTGCTAAAGTATTTTCTACCACAAGTGGAAGCTGCATCTCTTATGAGCATTACTCTTGCATTTGCATGGCAAAAGGCATTTAGGAAATGGCCTACATTTATGGTTCATTTCATACTATGGAACACTTTTGTCATGAGTTTATCTGCTGGAATCCTACTAATTTGTTTCCAAAAGCCCACCACCACTGGCGTGGGAGTCTGTTTCATTGGCTTTGCCATAGGGAATAGCTTGTACGCTTGTTGGATCACGCCGCGGATAGGATTTTGTATCAGGATATTGATCAAGTCGCTCGACCCTGTATCAAAGTTCCGTGATTTGAATCAACCCACTTACTGGATGCTTGGGTTCGGATTTTTGTGGATGTCTCTATGGATTTTAGGAGTCATTGGAGCCTTGAATTTCTACTTTCCTCCACTAGTCATAATTTCATTGGTATTGAGCCTGATGTGGACAGCCGAAGTAATGAGGAATGTAGTTAATATAACTGTGAGTAGGGTGATTGCTCTATATTATCTCAGAGGAATGCAGTCCAATACTCAGTTTTGTTTCCAGAGAGCCTTGAGTAAAAATCTTGGAAGTGCTTGTTTTGGATCTCTGTTTGTGCCAGCAATTGAAGCGCTGAGAATTGTTGCTCGAGCTTTAAATCTACTTGAGGGAGAGGATGAGTTCATGTTTTCTTGTGCGCATTGCTGTCTCCATGTCATGCAGTGCATCTTCCGATATGGCAATGGCTGGGCCTTTGTTCAGGTACCTTTACTCCAGTCATTAGCAATTTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

456

Amino Acids

51.33

Weight (kDa)

8.5

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 263 - 446 1.7e-19 Plasma-membrane choline transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1272
Acc65I GGTACC 1 cut(s) 1336
AccB1I GGYRCC 2 cut(s) 5, 1336
AccB7I CCANNNNNTGG 1 cut(s) 921
AccII CGCG 1 cut(s) 841
AciI CCGC 3 cut(s) 9, 839, 841
AclWI GGATC 2 cut(s) 839, 1186
AcsI RAATTY 1 cut(s) 985
AfaI GTAC 3 cut(s) 325, 821, 1338
AfeI AGCGCT 2 cut(s) 268, 1206
AfiI CCNNNNNNNGG 2 cut(s) 845, 921
AgsI TTSAA 5 cut(s) 149, 532, 907, 985, 1202
AhlI ACTAGT 1 cut(s) 1003
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 4 cut(s) 106, 620, 816, 1226
AluI AGCT 4 cut(s) 106, 620, 816, 1226
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 3 cut(s) 366, 957, 1286
Alw44I GTGCAC 1 cut(s) 488
AlwI GGATC 2 cut(s) 839, 1186
AlwNI CAGNNNCTG 1 cut(s) 547
Ama87I CYCGRG 1 cut(s) 1221
Aor51HI AGCGCT 2 cut(s) 268, 1206
AoxI GGCC 3 cut(s) 303, 677, 1323
ApaLI GTGCAC 1 cut(s) 488
ApeKI GCWGC 2 cut(s) 269, 620
ApoI RAATTY 1 cut(s) 985
AseI ATTAAT 1 cut(s) 165
Asp718I GGTACC 1 cut(s) 1336
AspLEI GCGC 4 cut(s) 269, 503, 1207, 1273
AspS9I GGNCC 2 cut(s) 304, 1323
AsuHPI GGTGA 1 cut(s) 1096
AvaI CYCGRG 1 cut(s) 1221
BaeGI GKGCMC 1 cut(s) 492
BanI GGYRCC 2 cut(s) 5, 1336
Bbv12I GWGCWC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 256, 607
BccI CCATC 2 cut(s) 340, 346
BclI TGATCA 1 cut(s) 867
BcoDI GTCTC 3 cut(s) 366, 957, 1286
BcuI ACTAGT 1 cut(s) 1003
BfaI CTAG 2 cut(s) 512, 1004
BfoI RGCGCY 3 cut(s) 270, 504, 1208
BisI GCNGC 4 cut(s) 9, 270, 621, 839
BlsI GCNGC 4 cut(s) 10, 271, 622, 840
BmeT110I CYCGRG 1 cut(s) 1221
BmgT120I GGNCC 2 cut(s) 304, 1323
BmiI GGNNCC 4 cut(s) 7, 296, 979, 1338
BmsI GCATC 3 cut(s) 632, 915, 1308
BplI GAGNNNNNCTC 2 cut(s) 625, 657
BpmI CTGGAG 1 cut(s) 1331
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 3 cut(s) 430, 1168, 1259
BsaBI GATNNNNATC 2 cut(s) 866, 906
BsaJI CCNNGG 1 cut(s) 839
BsaXI ACNNNNNCTCC 8 cut(s) 319, 349, 358, 361, 388, 391, 1329, 1359
Bsc4I CCNNNNNNNGG 2 cut(s) 845, 921
Bse1I ACTGG 3 cut(s) 778, 926, 1348
Bse3DI GCAATG 2 cut(s) 1273, 1321
Bse8I GATNNNNATC 2 cut(s) 866, 906
BseDI CCNNGG 1 cut(s) 839
BseGI GGATG 3 cut(s) 930, 954, 1255
BseJI GATNNNNATC 2 cut(s) 866, 906
BseLI CCNNNNNNNGG 2 cut(s) 845, 921
BseMI GCAATG 2 cut(s) 1273, 1321
BseMII CTCAG 6 cut(s) 371, 401, 410, 1117, 1139, 1199
BseNI ACTGG 3 cut(s) 778, 926, 1348
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 2 cut(s) 256, 607
BseYI CCCAGC 1 cut(s) 1320
Bsh1236I CGCG 1 cut(s) 841
BshFI GGCC 3 cut(s) 305, 679, 1325
BshNI GGYRCC 2 cut(s) 5, 1336
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 1221
BslI CCNNNNNNNGG 2 cut(s) 845, 921
BsmAI GTCTC 3 cut(s) 366, 957, 1286
BsmI GAATGC 2 cut(s) 391, 1116
BsnI GGCC 3 cut(s) 305, 679, 1325
BsoBI CYCGRG 1 cut(s) 1221
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 4 cut(s) 172, 831, 867, 1178
BspACI CCGC 3 cut(s) 9, 839, 841
BspANI GGCC 3 cut(s) 305, 679, 1325
BspCNI CTCAG 6 cut(s) 370, 400, 409, 1116, 1138, 1200
BspFNI CGCG 1 cut(s) 841
BspHI TCATGA 2 cut(s) 169, 720
BspLI GGNNCC 4 cut(s) 7, 296, 979, 1338
BspPI GGATC 2 cut(s) 839, 1186
BspT107I GGYRCC 2 cut(s) 5, 1336
BsrDI GCAATG 2 cut(s) 1273, 1321
BsrI ACTGG 3 cut(s) 778, 926, 1348
BssECI CCNNGG 1 cut(s) 839
BssMI GATC 4 cut(s) 172, 831, 867, 1178
Bst4CI ACNGT 1 cut(s) 1075
Bst6I CTCTTC 2 cut(s) 36, 78
BstC8I GCNNGC 1 cut(s) 1194
BstDEI CTNAG 6 cut(s) 357, 387, 396, 1103, 1125, 1208
BstDSI CCRYGG 1 cut(s) 839
BstF5I GGATG 3 cut(s) 930, 954, 1255
BstFNI CGCG 1 cut(s) 841
BstH2I RGCGCY 3 cut(s) 270, 504, 1208
BstHHI GCGC 4 cut(s) 269, 503, 1207, 1273
BstKTI GATC 4 cut(s) 175, 834, 870, 1181
BstMAI GTCTC 3 cut(s) 366, 957, 1286
BstMBI GATC 4 cut(s) 172, 831, 867, 1178
BstMWI GCNNNNNNNGC 2 cut(s) 397, 1202
BstSLI GKGCMC 1 cut(s) 492
BstUI CGCG 1 cut(s) 841
BstV1I GCAGC 2 cut(s) 256, 607
BstX2I RGATCY 1 cut(s) 1178
BstXI CCANNNNNNTGG 1 cut(s) 778
BstYI RGATCY 1 cut(s) 1178
BsuRI GGCC 3 cut(s) 305, 679, 1325
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 3 cut(s) 930, 954, 1255
BtsI GCAGTG 1 cut(s) 1301
BtsIMutI CAGTG 2 cut(s) 771, 1301
Cac8I GCNNGC 1 cut(s) 1194
CaiI CAGNNNCTG 1 cut(s) 547
CciI TCATGA 2 cut(s) 169, 720
CfoI GCGC 4 cut(s) 269, 503, 1207, 1273
Cfr13I GGNCC 2 cut(s) 304, 1323
Cfr42I CCGCGG 1 cut(s) 842
Csp6I GTAC 3 cut(s) 324, 820, 1337
CviAII CATG 8 cut(s) 170, 197, 493, 654, 721, 1258, 1286, 1291
CviQI GTAC 3 cut(s) 324, 820, 1337
DdeI CTNAG 6 cut(s) 357, 387, 396, 1103, 1125, 1208
DpnI GATC 4 cut(s) 174, 833, 869, 1180
DpnII GATC 4 cut(s) 172, 831, 867, 1178
DraI TTTAAA 1 cut(s) 1230
Eam1104I CTCTTC 2 cut(s) 36, 78
EarI CTCTTC 2 cut(s) 36, 78
Eco32I GATATC 1 cut(s) 468
Eco47III AGCGCT 2 cut(s) 268, 1206
Eco88I CYCGRG 1 cut(s) 1221
EcoRV GATATC 1 cut(s) 468
FaeI CATG 8 cut(s) 173, 200, 496, 657, 724, 1261, 1289, 1294
FatI CATG 8 cut(s) 169, 196, 492, 653, 720, 1257, 1285, 1290
FbaI TGATCA 1 cut(s) 867
Fnu4HI GCNGC 4 cut(s) 9, 270, 621, 839
FokI GGATG 3 cut(s) 937, 961, 1262
Fsp4HI GCNGC 4 cut(s) 9, 270, 621, 839
FspAI RTGCGCAY 1 cut(s) 1272
FspBI CTAG 2 cut(s) 512, 1004
FspI TGCGCA 1 cut(s) 1272
GlaI GCGC 4 cut(s) 268, 502, 1206, 1272
GluI GCNGC 4 cut(s) 9, 270, 621, 839
GsaI CCCAGC 1 cut(s) 1324
GsuI CTGGAG 1 cut(s) 1331
HaeII RGCGCY 3 cut(s) 270, 504, 1208
HaeIII GGCC 3 cut(s) 305, 679, 1325
HhaI GCGC 4 cut(s) 269, 503, 1207, 1273
Hin1II CATG 8 cut(s) 173, 200, 496, 657, 724, 1261, 1289, 1294
Hin6I GCGC 4 cut(s) 267, 501, 1205, 1271
HinP1I GCGC 4 cut(s) 267, 501, 1205, 1271
HinfI GANTC 5 cut(s) 557, 738, 783, 907, 969
HphI GGTGA 1 cut(s) 1096
Hpy166II GTNNAC 2 cut(s) 490, 1038
Hpy188I TCNGA 8 cut(s) 177, 317, 349, 525, 549, 938, 1106, 1307
Hpy188III TCNNGA 7 cut(s) 170, 447, 573, 721, 859, 1138, 1368
Hpy8I GTNNAC 2 cut(s) 490, 1038
HpyCH4III ACNGT 1 cut(s) 1075
HpyCH4V TGCA 8 cut(s) 211, 490, 623, 647, 653, 1114, 1294, 1299
HpyF10VI GCNNNNNNNGC 2 cut(s) 397, 1202
HpyF3I CTNAG 6 cut(s) 357, 387, 396, 1103, 1125, 1208
Hsp92II CATG 8 cut(s) 173, 200, 496, 657, 724, 1261, 1289, 1294
HspAI GCGC 4 cut(s) 267, 501, 1205, 1271
KpnI GGTACC 1 cut(s) 1340
Ksp22I TGATCA 1 cut(s) 867
KspI CCGCGG 1 cut(s) 842
Kzo9I GATC 4 cut(s) 172, 831, 867, 1178
LmnI GCTCC 2 cut(s) 277, 977
Lsp1109I GCAGC 2 cut(s) 256, 607
LweI GCATC 3 cut(s) 632, 915, 1308
MaeI CTAG 2 cut(s) 512, 1004
MalI GATC 4 cut(s) 174, 833, 869, 1180
MboI GATC 4 cut(s) 172, 831, 867, 1178
MboII GAAGA 4 cut(s) 53, 95, 1294, 1356
MfeI CAATTG 1 cut(s) 1197
MflI RGATCY 1 cut(s) 1178
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 7 cut(s) 240, 747, 985, 1011, 1197, 1212, 1359
MlyI GAGTC 2 cut(s) 792, 978
MmeI TCCRAC 3 cut(s) 322, 437, 809
MseI TTAA 4 cut(s) 165, 219, 1065, 1229
MslI CAYNNNNRTG 2 cut(s) 652, 776
MspA1I CMGCKG 2 cut(s) 11, 841
MunI CAATTG 1 cut(s) 1197
Mva1269I GAATGC 2 cut(s) 391, 1116
MvnI CGCG 1 cut(s) 841
MwoI GCNNNNNNNGC 2 cut(s) 397, 1202
NdeII GATC 4 cut(s) 172, 831, 867, 1178
NlaIII CATG 8 cut(s) 173, 200, 496, 657, 724, 1261, 1289, 1294
NlaIV GGNNCC 4 cut(s) 7, 296, 979, 1338
NsbI TGCGCA 1 cut(s) 1272
OliI CACNNNNGTG 1 cut(s) 776
PaeR7I CTCGAG 1 cut(s) 1221
PagI TCATGA 2 cut(s) 169, 720
PctI GAATGC 2 cut(s) 391, 1116
PfeI GAWTC 3 cut(s) 557, 738, 907
PflMI CCANNNNNTGG 1 cut(s) 921
PkrI GCNGC 4 cut(s) 10, 271, 622, 840
PleI GAGTC 2 cut(s) 791, 977
PpsI GAGTC 2 cut(s) 791, 977
PshBI ATTAAT 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 1320
PspN4I GGNNCC 4 cut(s) 7, 296, 979, 1338
PspPI GGNCC 2 cut(s) 304, 1323
PspXI VCTCGAGB 1 cut(s) 1221
PstNI CAGNNNCTG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 1178
RsaI GTAC 3 cut(s) 325, 821, 1338
RsaNI GTAC 3 cut(s) 324, 820, 1337
RseI CAYNNNNRTG 2 cut(s) 652, 776
SacII CCGCGG 1 cut(s) 842
SaqAI TTAA 4 cut(s) 165, 219, 1065, 1229
SatI GCNGC 4 cut(s) 9, 270, 621, 839
Sau3AI GATC 4 cut(s) 172, 831, 867, 1178
Sau96I GGNCC 2 cut(s) 304, 1323
SchI GAGTC 2 cut(s) 792, 978
SduI GDGCHC 1 cut(s) 492
SetI ASST 8 cut(s) 48, 108, 138, 622, 818, 1228, 1338, 1342
SfaNI GCATC 3 cut(s) 632, 915, 1308
Sfr274I CTCGAG 1 cut(s) 1221
Sfr303I CCGCGG 1 cut(s) 842
SgrBI CCGCGG 1 cut(s) 842
SlaI CTCGAG 1 cut(s) 1221
SmiMI CAYNNNNRTG 2 cut(s) 652, 776
SmlI CTYRAG 4 cut(s) 445, 1147, 1221, 1238
SmoI CTYRAG 4 cut(s) 445, 1147, 1221, 1238
SpeI ACTAGT 1 cut(s) 1003
Sse9I AATT 7 cut(s) 240, 747, 985, 1011, 1197, 1212, 1359
SsiI CCGC 3 cut(s) 9, 839, 841
SspI AATATT 1 cut(s) 163
SspMI CTAG 2 cut(s) 512, 1004
TaaI ACNGT 1 cut(s) 1075
TaqI TCGA 3 cut(s) 572, 879, 1222
TasI AATT 7 cut(s) 240, 747, 985, 1011, 1197, 1212, 1359
TauI GCSGC 2 cut(s) 11, 841
TfiI GAWTC 3 cut(s) 557, 738, 907
Tru1I TTAA 4 cut(s) 165, 219, 1065, 1229
Tru9I TTAA 4 cut(s) 165, 219, 1065, 1229
TscAI CASTG 2 cut(s) 778, 1301
TseI GCWGC 2 cut(s) 269, 620
TspDTI ATGAA 6 cut(s) 185, 683, 688, 781, 1005, 1246
TspGWI ACGGA 1 cut(s) 887
TspRI CASTG 2 cut(s) 778, 1301
Van91I CCANNNNNTGG 1 cut(s) 921
VneI GTGCAC 1 cut(s) 488
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 1 cut(s) 985
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XhoI CTCGAG 1 cut(s) 1221
XspI CTAG 2 cut(s) 512, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.