RchiOBHm_Chr2g0108791

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002251
Physical Location & Seq
Forward (+)
20248487 .. 20250232
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48265

Sequence Viewer

Length: 360 bp
ATGCAGTCCAATACTCAGTTTTGTTTCCAGAGAGCCTGGAGTAAAAGTCTTGGAAGTGCTTGTTTTGGATCTTTGTTTGTGCTATCAATTGAAGCACTGAGAATTGTTGCTCAGGCTTTAAATCAACTTGAGGGCGAGGATGGGTTTATGTTGTCTTCTGCGCATTGCTTTCTCAATGTCATGCAGTGCATCTTTCGATATGGCGATGGCTGGGCCTTTGTTCAGATATATATTCCAACAAATCCTTCTGGTGCTGAAACACTACCACCAGGAATTGTTGTTCCACAAACTGATTTGTATATGCACAGATTATGGGGTAAACCCAGTGAGGTTCTAAAAACCAGCCAAAGTACTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

119

Amino Acids

13.3

Weight (kDa)

6.03

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 5 - 78 4.2e-10 Plasma-membrane choline transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 162
AclWI GGATC 1 cut(s) 76
AfaI GTAC 1 cut(s) 352
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 2 cut(s) 35, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 229, 261
AloI GAACNNNNNNTCC 2 cut(s) 264, 296
AlwI GGATC 1 cut(s) 76
AoxI GGCC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 147
BccI CCATC 2 cut(s) 134, 200
BciT130I CCWGG 2 cut(s) 37, 270
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 37, 270
BmgT120I GGNCC 1 cut(s) 213
BmrFI CCNGG 2 cut(s) 37, 270
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 163
BseBI CCWGG 2 cut(s) 37, 270
BseGI GGATG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 3 cut(s) 29, 89, 125
BseNI ACTGG 1 cut(s) 324
BseYI CCCAGC 1 cut(s) 210
BshFI GGCC 1 cut(s) 215
BsnI GGCC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 68
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 3 cut(s) 28, 90, 124
BspPI GGATC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 1 cut(s) 324
BssMI GATC 1 cut(s) 68
Bst2UI CCWGG 2 cut(s) 37, 270
BstDEI CTNAG 3 cut(s) 15, 98, 111
BstF5I GGATG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BstNI CCWGG 2 cut(s) 37, 270
BstSCI CCNGG 2 cut(s) 35, 268
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 215
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 3 cut(s) 95, 191, 331
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 351
CviAII CATG 1 cut(s) 181
CviJI RGCY 5 cut(s) 35, 116, 210, 215, 345
CviKI_1 RGCY 5 cut(s) 35, 116, 210, 215, 345
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 3 cut(s) 15, 98, 111
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
DraI TTTAAA 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 35, 268
FaeI CATG 1 cut(s) 184
FaiI YATR 8 cut(s) 149, 182, 201, 229, 231, 300, 302, 313
FatI CATG 1 cut(s) 180
FokI GGATG 1 cut(s) 152
FspI TGCGCA 1 cut(s) 162
GlaI GCGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 58
HaeIII GGCC 1 cut(s) 215
HhaI GCGC 1 cut(s) 163
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 4, 184, 189, 304
HpyF3I CTNAG 3 cut(s) 15, 98, 111
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 68
LweI GCATC 1 cut(s) 198
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 1 cut(s) 68
MluCI AATT 3 cut(s) 87, 102, 273
MmeI TCCRAC 1 cut(s) 260
MnlI CCTC 3 cut(s) 124, 130, 322
MseI TTAA 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 37, 270
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 2 cut(s) 37, 270
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 184
NsbI TGCGCA 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 35, 268
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 2 cut(s) 35, 268
PspPI GGNCC 1 cut(s) 213
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 213
ScaI AGTACT 1 cut(s) 352
ScrFI CCNGG 2 cut(s) 37, 270
SetI ASST 1 cut(s) 333
SfaNI GCATC 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 3 cut(s) 87, 102, 273
StyD4I CCNGG 2 cut(s) 35, 268
TaqI TCGA 1 cut(s) 196
TasI AATT 3 cut(s) 87, 102, 273
TatI WGTACW 1 cut(s) 350
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 3 cut(s) 102, 191, 331
TspRI CASTG 3 cut(s) 102, 191, 331
ZrmI AGTACT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.