Rroxscaffold_7G00196360

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002251
Physical Location & Seq
Forward (+)
39216487 .. 39218212
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196360.1

Sequence Viewer

Length: 369 bp
ATGCCCGTATTTCGATTAGCCGGGATCGCGTCCAGTGCTCAAGGACTTTGGGAAATCAGCGCTTCCATATATGTTCCAACAAATCCTTCCGGTGCTGAAACACTACCACCAGGAACTGTTGTTCCACAAACTGATTTGTGTATGCACAGATTATGGGGTAAACCCGTTTGTGAAATGTCTTACTATGATACTTTTGAATTTGCAGGATCTAAAAACCAGCCAAAGTACTTGGTAACATTTACCGTTGGTATTAATCAGAAGAAAAATATTGATGCAGCAGTTAAAATTAACAATTTACAAAAACACCGAGAGAAACAGAACAGTGAACGAGAGAGTTTGCTGAGGGAGCAAGACAGGATCTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

122

Amino Acids

13.79

Weight (kDa)

8.6

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 27 - 96 4.2e-10 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AclWI GGATC 3 cut(s) 32, 214, 365
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 1 cut(s) 227
AfeI AGCGCT 1 cut(s) 61
AgsI TTSAA 1 cut(s) 197
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AloI GAACNNNNNNTCC 4 cut(s) 105, 106, 137, 138
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 3 cut(s) 32, 214, 365
AlwNI CAGNNNCTG 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 197
AseI ATTAAT 1 cut(s) 252
AspLEI GCGC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 22, 111
BmrFI CCNGG 2 cut(s) 22, 111
BmsI GCATC 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 2 cut(s) 21, 90
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 24, 206, 357
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 1 cut(s) 29
BspPI GGATC 3 cut(s) 32, 214, 365
BsrI ACTGG 1 cut(s) 33
BssMI GATC 3 cut(s) 24, 206, 357
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 118, 244, 323
BstDEI CTNAG 1 cut(s) 341
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 3 cut(s) 27, 209, 360
BstMBI GATC 3 cut(s) 24, 206, 357
BstMWI GCNNNNNNNGC 3 cut(s) 26, 35, 346
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 20, 109
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 206, 357
BstYI RGATCY 2 cut(s) 206, 357
BtsIMutI CAGTG 2 cut(s) 40, 328
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 1 cut(s) 62
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 226
CviJI RGCY 2 cut(s) 20, 220
CviKI_1 RGCY 2 cut(s) 20, 220
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 341
DpnI GATC 3 cut(s) 26, 208, 359
DpnII GATC 3 cut(s) 24, 206, 357
Eco47III AGCGCT 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 109
FaiI YATR 6 cut(s) 68, 70, 72, 143, 154, 186
Fnu4HI GCNGC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 276
GlaI GCGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 2 cut(s) 21, 90
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 62
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HpaII CCGG 2 cut(s) 21, 90
Hpy166II GTNNAC 2 cut(s) 161, 326
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 161, 326
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 3 cut(s) 118, 244, 323
HpyCH4V TGCA 3 cut(s) 145, 203, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 35, 346
HpyF3I CTNAG 1 cut(s) 341
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 3 cut(s) 24, 206, 357
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 8 cut(s) 34, 46, 96, 103, 123, 189, 230, 340
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 26, 208, 359
MboI GATC 3 cut(s) 24, 206, 357
MboII GAAGA 2 cut(s) 271, 352
MflI RGATCY 2 cut(s) 206, 357
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 3 cut(s) 197, 285, 292
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 1 cut(s) 336
MseI TTAA 3 cut(s) 252, 282, 288
MspI CCGG 2 cut(s) 21, 90
MspR9I CCNGG 2 cut(s) 22, 111
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 26, 35, 346
NciI CCSGG 1 cut(s) 22
NdeII GATC 3 cut(s) 24, 206, 357
PkrI GCNGC 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 2 cut(s) 206, 357
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 3 cut(s) 252, 282, 288
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 3 cut(s) 24, 206, 357
ScaI AGTACT 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 22, 111
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 3 cut(s) 197, 285, 292
SspI AATATT 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 20, 109
TaaI ACNGT 3 cut(s) 118, 244, 323
TaqI TCGA 1 cut(s) 13
TasI AATT 3 cut(s) 197, 285, 292
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 3 cut(s) 252, 282, 288
Tru9I TTAA 3 cut(s) 252, 282, 288
TscAI CASTG 2 cut(s) 40, 328
TseI GCWGC 1 cut(s) 275
TspRI CASTG 2 cut(s) 40, 328
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.