Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002251

Physical Location & Seq

Genomic Coordinates Reverse (-)

43937687 .. 43940901

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGACGCACTGCCAAATTCGAGCCCCTTTTCTTGTCGCACGTCTAACAAGAACCACCGCCAAATTTGAACTTTTGTTTCTTGTCGCACCGCCAACAAGAACCACCGCCAAATTCAAACTTTTGTTTCTTGTCACACCACTAAACAAGAACCACTGCCAAATTCGAACTTTGCTTCTTGTCTCACCGCCATCAAGAACCATCGCCATACAAAAACTCGATGCAGCTTTGCGGCTTGCCACCGTCGCTAGCATTATTTACTCTGGACACCCAGAGATCCGCCAAGCACCATCCGGCATTCCTTGCACCACCACAACTCACTGGGCGTCAGCGCCAAGGAGGTCGTCAAGAATAAACTCCAAGTCATTCACCACTAAGCTGCGCACCGCCAAGCCCCATATTCGTCAATACGACTTGACGGAAGCCAAAGCTTCATCTCCTCCGTCAATACGAGTTGACGACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.18

Weight (kDa)

11.15

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13760
fragaria_vesca	FvH4_5g01450 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810 FvH4_7g01810
malus_domestica	MD02G1300300.v1.1 MD07G1024500.v1.1
prunus_persica	Prupe.2G024300_v2.0.a1
pyrus_communis	pycom02g25230 pycom07g01900
rosa_chinensis	RchiOBHm_Chr1g0318441 RchiOBHm_Chr2g0108781 RchiOBHm_Chr2g0108791 RchiOBHm_Chr3g0495071
rosa_laevigata	RLG00000001167 RLG00000030537 RLG00000036230
rosa_multiflora	Rmu_sc0003936.1_g000042
rosa_roxburghii	Rroxscaffold_2G00099340 Rroxscaffold_3G00250150 Rroxscaffold_4G00329250 Rroxscaffold_7G00170850 Rroxscaffold_7G00196360
rosa_rugosa	Rorug01G0021200 Rorug01G0021300
rosa_samantha	Rh1AG033300 Rh1BG029400 Rh1CG031700 Rh1CG032900 Rh1DG037600 Rh1DG037800 Rh2AG206300 Rh2BG217600 Rh2CG209200 Rh2DG212500 Rh3AG318700 Rh3CG351300 Rh5AG311200 Rh5AG311300
rosa_wichuraiana	Rw1G002670 Rw5G029080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	380
AciI	CCGC	7 cut(s)	57, 89, 105, 185, 229, 277, 384
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	4 cut(s)	15, 62, 110, 159
AcyI	GRCGYC	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	68, 115
AjiI	CACGTC	1 cut(s)	41
AluBI	AGCT	3 cut(s)	224, 376, 428
AluI	AGCT	3 cut(s)	224, 376, 428
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	221, 376
ApoI	RAATTY	4 cut(s)	15, 62, 110, 159
AspLEI	GCGC	2 cut(s)	331, 381
AsuHPI	GGTGA	2 cut(s)	174, 358
AsuII	TTCGAA	1 cut(s)	163
AsuNHI	GCTAGC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	233, 363
BccI	CCATC	3 cut(s)	196, 206, 295
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	332
BisI	GCNGC	3 cut(s)	222, 230, 377
BlsI	GCNGC	3 cut(s)	223, 231, 378
BmgBI	CACGTC	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	208
BmtI	GCTAGC	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	328
Bpu14I	TTCGAA	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	233, 363
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	7 cut(s)	57, 89, 105, 185, 229, 277, 384
BspOI	GCTAGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	241
BstACI	GRCGYC	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	234, 247
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	331, 381
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 300
BstV1I	GCAGC	2 cut(s)	233, 363
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	287
BtsI	GCAGTG	2 cut(s)	7, 151
BtsIMutI	CAGTG	3 cut(s)	7, 151, 316
Cac8I	GCNNGC	2 cut(s)	234, 247
CfoI	GCGC	2 cut(s)	331, 381
CseI	GACGC	2 cut(s)	13, 312
CviJI	RGCY	7 cut(s)	23, 224, 232, 376, 391, 422, 428
CviKI_1	RGCY	7 cut(s)	23, 224, 232, 376, 391, 422, 428
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	332
FaiI	YATR	2 cut(s)	206, 396
Fnu4HI	GCNGC	3 cut(s)	222, 230, 377
FokI	GGATG	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	3 cut(s)	222, 230, 377
FspBI	CTAG	1 cut(s)	246
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	2 cut(s)	330, 380
GluI	GCNGC	3 cut(s)	222, 230, 377
HaeII	RGCGCY	1 cut(s)	332
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	2 cut(s)	13, 312
HhaI	GCGC	2 cut(s)	331, 381
Hin1I	GRCGYC	1 cut(s)	323
Hin6I	GCGC	2 cut(s)	329, 379
HinP1I	GCGC	2 cut(s)	329, 379
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	426
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	174, 358
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188III	TCNNGA	3 cut(s)	192, 261, 345
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	1 cut(s)	245
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	221, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 300
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	323
HspAI	GCGC	2 cut(s)	329, 379
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	4 cut(s)	246, 282, 304, 304
Lsp1109I	GCAGC	2 cut(s)	233, 363
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	4 cut(s)	15, 62, 110, 159
MnlI	CCTC	2 cut(s)	330, 447
MseI	TTAA	1 cut(s)	463
MspI	CCGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	242, 300
NdeII	GATC	1 cut(s)	273
NheI	GCTAGC	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	130
NsbI	TGCGCA	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	223, 231, 378
PsuI	RGATCY	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	3 cut(s)	222, 230, 377
Sau3AI	GATC	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	5 cut(s)	43, 226, 341, 378, 430
SfaNI	GCATC	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	163
Sse9I	AATT	4 cut(s)	15, 62, 110, 159
SsiI	CCGC	7 cut(s)	57, 89, 105, 185, 229, 277, 384
SspMI	CTAG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	3 cut(s)	19, 163, 216
TasI	AATT	4 cut(s)	15, 62, 110, 159
TauI	GCSGC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TscAI	CASTG	3 cut(s)	14, 158, 323
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	221, 376
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	2 cut(s)	429, 431
TspRI	CASTG	3 cut(s)	14, 158, 323
XapI	RAATTY	4 cut(s)	15, 62, 110, 159
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.