Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Forward (+)

10770865 .. 10771077

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAGGCTTTTGAAAATCCAGCTTGTGGATGGGGCTAATGAGCAATCGCTAAGGCGCCTCAGGGTTATCACCGGCCGTGGTGCAGAAAGGTCTGTTCTGAAACAATCTGTCATCAGACACGTCCAGAACGAAGGTATCAAATGGAGGGAAGAGAATCCGGGAGCCGTACTGATCAAGCTAGCTTCACAGAGACAACTTCAGGTTCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

71

Amino Acids

7.98

Weight (kDa)

11.49

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	55
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	25
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	3 cut(s)	22, 178, 182
AluI	AGCT	3 cut(s)	22, 178, 182
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	61
AsuNHI	GCTAGC	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	59
BaeI	ACNNNNGTAYC	2 cut(s)	118, 151
BanI	GGYRCC	1 cut(s)	54
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	2 cut(s)	60, 149
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	56, 163
BmrFI	CCNGG	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	73
BseX3I	CGGCCG	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	72, 158
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	56, 163
BspOI	GCTAGC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	50, 59
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	171
BstMCI	CGRYCG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	157
BstZI	CGGCCG	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	75
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	7 cut(s)	7, 22, 35, 75, 164, 178, 182
CviKI_1	RGCY	7 cut(s)	7, 22, 35, 75, 164, 178, 182
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	2 cut(s)	50, 59
DinI	GGCGCC	1 cut(s)	56
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	73
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EclXI	CGGCCG	1 cut(s)	73
Eco52I	CGGCCG	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	182
Eco81I	CCTNAGG	1 cut(s)	59
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
FaeI	CATG	1 cut(s)	209
FaiI	YATR	1 cut(s)	207
FatI	CATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	171
FokI	GGATG	1 cut(s)	41
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	56
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	72, 158
HhaI	GCGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	72, 158
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	99, 116
Hpy188III	TCNNGA	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	50, 59
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	55
KasI	GGCGCC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	6 cut(s)	32, 46, 85, 137, 171, 185
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	120
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	1 cut(s)	161
Mly113I	GGCGCC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	68, 138
MspI	CCGG	2 cut(s)	72, 158
MspR9I	CCNGG	1 cut(s)	159
NarI	GGCGCC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	171
NheI	GCTAGC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	56, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	157
PluTI	GGCGCC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	56, 163
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	7 cut(s)	24, 92, 123, 136, 180, 184, 204
SfoI	GGCGCC	1 cut(s)	56
SspDI	GGCGCC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	157
TaiI	ACGT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	194
Van91I	CCANNNNNTGG	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.