Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004999.1

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Forward (+)

20811 .. 21710

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004999.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgacgttcaggtttgaagttgctgctactagagaagaggaggccgaacagtttctttggtctatgctcggagacgagtcggagttaaacttgggtgttgttagggatgtcctttctcagtgtgggtatgaagttgaaaaggccttggatgccctacttgagttatcttcttcctcaagtgagacatggtattgtgtgggagatactcaccagagttataaagaggttcttgctggtactacttccaaagctcaccggagtacgaactcagataacctctctcaggtggtgttggaatctttgttcaacaaatccaagaggaggagtccagaaaatgaagaaccaagaaccatgaattcttggaagaatagtatgaaggaattgcaagagtcatcaggatctgagcttgatgttgccataagagctgaatatgatgcatatagagggactgcaaagcagcactgggattcagtaacgtcccactatcagaaagctgcaactgcatattcaaacggatcgcgggcatacgcaggttacctctctgagcaggcgaaggtaaaggcgaaattggcacgagaggcggatgagaaggcaagccaggagatcttcaaagctagaaacaaggataagtggataaacaatggtgtgataaccattgatttgcatggccagcatgtcaaacaagcaatgaagcttttgaaaatccaccttctgaaaggaaccaatgcgcagtcgcttcggcacctcagggttatcaccggctgtggtgcaggaaagtctattctgaaacaatcagtcatcagactcatccagaacgaaggtattaaatggagcgaagagaatccgggagcggtattaatcaagctagcttcacagagacaacttcaggttcatggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

299

Amino Acids

33.51

Weight (kDa)

8.28

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
Acc16I	TGCGCA	1 cut(s)	729
Acc36I	ACCTGC	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	741
AccBSI	CCGCTC	1 cut(s)	851
AccII	CGCG	1 cut(s)	520
AciI	CCGC	3 cut(s)	520, 581, 851
AclWI	GGATC	2 cut(s)	406, 523
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	869
AfaI	GTAC	2 cut(s)	238, 262
AfiI	CCNNNNNNNGG	2 cut(s)	283, 321
AgsI	TTSAA	6 cut(s)	17, 137, 307, 510, 610, 700
AjnI	CCWGG	1 cut(s)	597
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	8 cut(s)	251, 406, 425, 494, 614, 694, 865, 869
AluI	AGCT	8 cut(s)	251, 406, 425, 494, 614, 694, 865, 869
Alw26I	GTCTC	3 cut(s)	66, 176, 871
AlwI	GGATC	2 cut(s)	406, 523
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	3 cut(s)	42, 141, 667
ApeKI	GCWGC	3 cut(s)	23, 457, 494
ApoI	RAATTY	1 cut(s)	355
AseI	ATTAAT	1 cut(s)	857
Asp700I	GAANNNNTTC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	730
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	200, 245, 748
AsuNHI	GCTAGC	1 cut(s)	865
AxyI	CCTNAGG	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	741
BauI	CACGAG	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	10, 469, 481
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciT130I	CCWGG	1 cut(s)	599
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	3 cut(s)	66, 176, 871
BfaI	CTAG	3 cut(s)	30, 615, 866
BfuAI	ACCTGC	1 cut(s)	521
BglII	AGATCT	1 cut(s)	603
BisI	GCNGC	3 cut(s)	24, 458, 495
BlsI	GCNGC	3 cut(s)	25, 459, 496
Bme1390I	CCNGG	2 cut(s)	599, 846
BmiI	GGNNCC	2 cut(s)	721, 743
BmrFI	CCNGG	2 cut(s)	599, 846
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	2 cut(s)	139, 424
BmtI	GCTAGC	1 cut(s)	869
BmuI	ACTGGG	1 cut(s)	472
BpuEI	CTTGAG	2 cut(s)	160, 179
BpuMI	CCSGG	1 cut(s)	846
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 321
Bse118I	RCCGGY	1 cut(s)	758
Bse1I	ACTGG	1 cut(s)	467
Bse21I	CCTNAGG	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	4 cut(s)	112, 154, 589, 807
BseLI	CCNNNNNNNGG	2 cut(s)	283, 321
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	6 cut(s)	131, 282, 296, 393, 534, 760
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	3 cut(s)	53, 334, 337
BseXI	GCAGC	3 cut(s)	10, 469, 481
BsgI	GTGCAG	1 cut(s)	789
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	3 cut(s)	44, 143, 669
BshNI	GGYRCC	1 cut(s)	741
BsiSI	CCGG	3 cut(s)	256, 759, 845
BslFI	GGGAC	2 cut(s)	460, 463
BslI	CCNNNNNNNGG	2 cut(s)	283, 321
BsmAI	GTCTC	3 cut(s)	66, 176, 871
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	460, 463
BsnI	GGCC	3 cut(s)	44, 143, 669
Bsp143I	GATC	3 cut(s)	398, 515, 603
BspACI	CCGC	3 cut(s)	520, 581, 851
BspANI	GGCC	3 cut(s)	44, 143, 669
BspCNI	CTCAG	6 cut(s)	130, 281, 295, 394, 535, 759
BspFNI	CGCG	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	721, 743
BspMI	ACCTGC	1 cut(s)	521
BspOI	GCTAGC	1 cut(s)	869
BspPI	GGATC	2 cut(s)	406, 523
BspT107I	GGYRCC	1 cut(s)	741
BsrBI	CCGCTC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	758
BsrI	ACTGG	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	758
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	398, 515, 603
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	51
Bst6I	CTCTTC	2 cut(s)	30, 831
BstC8I	GCNNGC	5 cut(s)	522, 549, 595, 671, 867
BstDEI	CTNAG	6 cut(s)	117, 268, 282, 402, 543, 746
BstEII	GGTNACC	1 cut(s)	533
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	4 cut(s)	112, 154, 589, 807
BstFNI	CGCG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	3 cut(s)	401, 518, 606
BstMAI	GTCTC	3 cut(s)	66, 176, 871
BstMBI	GATC	3 cut(s)	398, 515, 603
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 422, 500, 569, 578, 670
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	677
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	597, 844
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	3 cut(s)	10, 469, 481
BstX2I	RGATCY	2 cut(s)	398, 603
BstYI	RGATCY	2 cut(s)	398, 603
Bsu36I	CCTNAGG	1 cut(s)	746
BsuRI	GGCC	3 cut(s)	44, 143, 669
BtsCI	GGATG	4 cut(s)	112, 154, 589, 807
BtsIMutI	CAGTG	2 cut(s)	125, 460
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	5 cut(s)	522, 549, 595, 671, 867
CaiI	CAGNNNCTG	1 cut(s)	401
CfoI	GCGC	1 cut(s)	730
Cfr10I	RCCGGY	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	237, 261
CviAII	CATG	5 cut(s)	186, 352, 665, 674, 893
CviQI	GTAC	2 cut(s)	237, 261
DdeI	CTNAG	6 cut(s)	117, 268, 282, 402, 543, 746
DpnI	GATC	3 cut(s)	400, 517, 605
DpnII	GATC	3 cut(s)	398, 515, 603
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	30, 831
EarI	CTCTTC	2 cut(s)	30, 831
EciI	GGCGGA	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	869
Eco81I	CCTNAGG	1 cut(s)	746
Eco91I	GGTNACC	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	5 cut(s)	189, 355, 668, 677, 896
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	2 cut(s)	460, 463
FatI	CATG	5 cut(s)	185, 351, 664, 673, 892
FauI	CCCGC	1 cut(s)	513
Fnu4HI	GCNGC	3 cut(s)	24, 458, 495
FokI	GGATG	4 cut(s)	119, 161, 596, 794
Fsp4HI	GCNGC	3 cut(s)	24, 458, 495
FspBI	CTAG	3 cut(s)	30, 615, 866
FspI	TGCGCA	1 cut(s)	729
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	3 cut(s)	24, 458, 495
HaeIII	GGCC	3 cut(s)	44, 143, 669
HapII	CCGG	3 cut(s)	256, 759, 845
HhaI	GCGC	1 cut(s)	730
Hin1II	CATG	5 cut(s)	189, 355, 668, 677, 896
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	7 cut(s)	77, 296, 325, 389, 467, 804, 841
HpaII	CCGG	3 cut(s)	256, 759, 845
HphI	GGTGA	3 cut(s)	200, 245, 748
Hpy188I	TCNGA	9 cut(s)	71, 82, 271, 403, 489, 544, 714, 786, 803
Hpy188III	TCNNGA	3 cut(s)	329, 396, 811
HpyAV	CCTTC	5 cut(s)	370, 547, 583, 719, 812
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	2 cut(s)	5, 476
HpyCH4V	TGCA	7 cut(s)	385, 437, 452, 497, 503, 664, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 422, 500, 569, 578, 670
HpyF3I	CTNAG	6 cut(s)	117, 268, 282, 402, 543, 746
HpySE526I	ACGT	2 cut(s)	5, 476
Hsp92II	CATG	5 cut(s)	189, 355, 668, 677, 896
HspAI	GCGC	1 cut(s)	728
Kzo9I	GATC	3 cut(s)	398, 515, 603
LmnI	GCTCC	2 cut(s)	831, 848
Lsp1109I	GCAGC	3 cut(s)	10, 469, 481
LweI	GCATC	2 cut(s)	139, 424
MaeI	CTAG	3 cut(s)	30, 615, 866
MaeII	ACGT	2 cut(s)	5, 476
MaeIII	GTNAC	2 cut(s)	472, 533
MalI	GATC	3 cut(s)	400, 517, 605
MbiI	CCGCTC	1 cut(s)	851
MboI	GATC	3 cut(s)	398, 515, 603
MboII	GAAGA	7 cut(s)	47, 159, 162, 350, 376, 598, 848
MflI	RGATCY	2 cut(s)	398, 603
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	3 cut(s)	355, 380, 566
MluNI	TGGCCA	1 cut(s)	669
MlyI	GAGTC	4 cut(s)	86, 334, 398, 798
MmeI	TCCRAC	2 cut(s)	60, 273
Mox20I	TGGCCA	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	3 cut(s)	86, 825, 857
Msp20I	TGGCCA	1 cut(s)	669
MspI	CCGG	3 cut(s)	256, 759, 845
MspR9I	CCNGG	2 cut(s)	599, 846
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	6 cut(s)	149, 422, 500, 569, 578, 670
NciI	CCSGG	1 cut(s)	846
NdeII	GATC	3 cut(s)	398, 515, 603
NheI	GCTAGC	1 cut(s)	865
NlaIII	CATG	5 cut(s)	189, 355, 668, 677, 896
NlaIV	GGNNCC	2 cut(s)	721, 743
NsbI	TGCGCA	1 cut(s)	729
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	296, 467, 841
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	3 cut(s)	25, 459, 496
PleI	GAGTC	4 cut(s)	85, 333, 397, 798
PpsI	GAGTC	4 cut(s)	85, 333, 397, 798
PshBI	ATTAAT	1 cut(s)	857
PsiI	TTATAA	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	597
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	2 cut(s)	721, 743
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	398, 603
RsaI	GTAC	2 cut(s)	238, 262
RsaNI	GTAC	2 cut(s)	237, 261
SaqAI	TTAA	3 cut(s)	86, 825, 857
SatI	GCNGC	3 cut(s)	24, 458, 495
Sau3AI	GATC	3 cut(s)	398, 515, 603
SchI	GAGTC	4 cut(s)	86, 334, 398, 798
ScrFI	CCNGG	2 cut(s)	599, 846
SfaNI	GCATC	2 cut(s)	139, 424
SmlI	CTYRAG	2 cut(s)	158, 175
SmoI	CTYRAG	2 cut(s)	158, 175
Sse9I	AATT	3 cut(s)	355, 380, 566
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	3 cut(s)	520, 581, 851
SspMI	CTAG	3 cut(s)	30, 615, 866
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	597, 844
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	2 cut(s)	8, 479
TasI	AATT	3 cut(s)	355, 380, 566
TfiI	GAWTC	3 cut(s)	296, 467, 841
Tru1I	TTAA	3 cut(s)	86, 825, 857
Tru9I	TTAA	3 cut(s)	86, 825, 857
TscAI	CASTG	2 cut(s)	125, 467
TseI	GCWGC	3 cut(s)	23, 457, 494
TspDTI	ATGAA	6 cut(s)	144, 351, 368, 389, 704, 881
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	125, 467
VspI	ATTAAT	1 cut(s)	857
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	3 cut(s)	30, 615, 866
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.