Rw0G023020

DUF1771

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01074
OG0001145
Physical Location & Seq
Forward (+)
366 .. 2987
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023020.1

Sequence Viewer

Length: 810 bp
CTGACAGATAGGGCATCTGATTGTACTTCTTATTCATCTGAGGATAATATATGGTATTCGGGATACACTCACCGGAATTATGCGGAGGTTCTTGCTAGTTCGGAAGCTCATCCTCCCATGAGCCCAAGTAGTACCGAATCGAATCTCCCTCAAAAGGTGTTGGAATCTTTGTTTAACATCTCCAAGACTCCTGAATATGAACCAAAAGCTATGAATTGGAAGAATGTAGTGAATAAGTTGCAGTCATTGGGACCTGAAGTTGATGGTTGCACATCAAGCTCTGCAGAAGCAAAACAAGACACTTTGGCTAAAGGGGATGAATATCATGCATTTAGAGCGACTGCAAGGCAGCACTGGGATTCAATGAAGTCCTACTATCAAAAGGCTGCTACAGCATATTCAAAGGGATCACGGGAACATGCAGGTTATCTTTCTGAGCAGGGGAAGGTACAGACTAAAATGGCACAAAAGGCTGATGAAAAGGCAAGCCAGGAAATCTTTAAAGCTAGAAACAAGGACATAGAAAACGTGATAACAATTGATTTGCATGGGCAGCATGTCAAACAAGCAATGAAGCTTTTGAAAATGCACCTTCTATTTGGAACATATGCACAATCGGTTCAATTCCTCAGGGTTATCACAGGATGTGGGTCACATGGTCTAGGAAAGTCAAAGCTGAAACAATCGGTCATAGAGCTTGTTGAGAACGAAGGTATTACATGGTCTGAAGAGAATCGGGGGGTTGTATTGATAAAGCTAGGTTCACACACGGAGTTCAACTTTATGGATTCCGAGAGTGATGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 Smr

Protein Analysis

269

Amino Acids

30.1

Weight (kDa)

6.09

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1771 PF08590 108 - 171 4.1e-18 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 413
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 415
AcuI CTGAAG 2 cut(s) 276, 747
AfaI GTAC 3 cut(s) 25, 133, 450
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 5 cut(s) 363, 402, 583, 623, 778
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 8 cut(s) 107, 209, 279, 506, 577, 676, 697, 757
AluI AGCT 8 cut(s) 107, 209, 279, 506, 577, 676, 697, 757
AlwI GGATC 1 cut(s) 415
ApeKI GCWGC 3 cut(s) 349, 386, 553
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 629
BanII GRGCYC 1 cut(s) 125
BbvI GCAGC 3 cut(s) 361, 373, 565
BccI CCATC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 491
BciVI GTATCC 1 cut(s) 56
BfaI CTAG 4 cut(s) 96, 507, 662, 758
BfmI CTRYAG 2 cut(s) 282, 390
BfuAI ACCTGC 1 cut(s) 413
BfuI GTATCC 1 cut(s) 56
BisI GCNGC 3 cut(s) 350, 387, 554
BlsI GCNGC 3 cut(s) 351, 388, 555
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 491
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 321
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 359
Bse21I CCTNAGG 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 576
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 1 cut(s) 491
BseGI GGATG 3 cut(s) 109, 322, 650
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 3 cut(s) 30, 426, 643
BseNI ACTGG 1 cut(s) 359
BseXI GCAGC 3 cut(s) 361, 373, 565
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 407
BspACI CCGC 1 cut(s) 83
BspCNI CTCAG 3 cut(s) 31, 427, 642
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 1 cut(s) 359
BssMI GATC 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 491
Bst6I CTCTTC 1 cut(s) 723
BstC8I GCNNGC 1 cut(s) 487
BstDEI CTNAG 3 cut(s) 39, 435, 629
BstF5I GGATG 3 cut(s) 109, 322, 650
BstKTI GATC 1 cut(s) 410
BstMBI GATC 1 cut(s) 407
BstMWI GCNNNNNNNGC 5 cut(s) 276, 335, 392, 470, 553
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 2 cut(s) 422, 560
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 2 cut(s) 282, 390
BstV1I GCAGC 3 cut(s) 361, 373, 565
Bsu36I CCTNAGG 1 cut(s) 629
BsuI GTATCC 1 cut(s) 56
BtsCI GGATG 3 cut(s) 109, 322, 650
BtsIMutI CAGTG 1 cut(s) 352
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 24, 132, 449
CviAII CATG 7 cut(s) 118, 326, 419, 548, 557, 656, 720
CviQI GTAC 3 cut(s) 24, 132, 449
DdeI CTNAG 3 cut(s) 39, 435, 629
DpnI GATC 1 cut(s) 409
DpnII GATC 1 cut(s) 407
DraI TTTAAA 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 723
EarI CTCTTC 1 cut(s) 723
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 2 cut(s) 276, 747
Eco81I CCTNAGG 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 7 cut(s) 121, 329, 422, 551, 560, 659, 723
FaqI GGGAC 1 cut(s) 264
FatI CATG 7 cut(s) 117, 325, 418, 547, 556, 655, 719
FauNDI CATATG 1 cut(s) 607
Fnu4HI GCNGC 3 cut(s) 350, 387, 554
FokI GGATG 3 cut(s) 96, 329, 657
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 350, 387, 554
FspBI CTAG 4 cut(s) 96, 507, 662, 758
GluI GCNGC 3 cut(s) 350, 387, 554
HapII CCGG 1 cut(s) 73
Hin1II CATG 7 cut(s) 121, 329, 422, 551, 560, 659, 723
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 7 cut(s) 137, 142, 164, 187, 359, 733, 788
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 764
Hpy188I TCNGA 6 cut(s) 19, 40, 103, 436, 727, 793
Hpy188III TCNNGA 2 cut(s) 60, 191
Hpy8I GTNNAC 1 cut(s) 764
HpyAV CCTTC 3 cut(s) 439, 602, 704
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 9 cut(s) 241, 270, 284, 329, 344, 422, 547, 589, 611
HpyF10VI GCNNNNNNNGC 5 cut(s) 276, 335, 392, 470, 553
HpyF3I CTNAG 3 cut(s) 39, 435, 629
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 7 cut(s) 121, 329, 422, 551, 560, 659, 723
Kzo9I GATC 1 cut(s) 407
Lsp1109I GCAGC 3 cut(s) 361, 373, 565
LweI GCATC 1 cut(s) 23
MaeI CTAG 4 cut(s) 96, 507, 662, 758
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 1 cut(s) 651
MalI GATC 1 cut(s) 409
MboI GATC 1 cut(s) 407
MboII GAAGA 2 cut(s) 232, 740
MfeI CAATTG 1 cut(s) 537
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 4 cut(s) 76, 214, 537, 623
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 34, 79, 123, 159, 638
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 2 cut(s) 174, 501
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 491
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 5 cut(s) 276, 335, 392, 470, 553
NdeI CATATG 1 cut(s) 607
NdeII GATC 1 cut(s) 407
NlaIII CATG 7 cut(s) 121, 329, 422, 551, 560, 659, 723
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 651
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 2 cut(s) 422, 560
PfeI GAWTC 6 cut(s) 137, 142, 164, 359, 733, 788
PkrI GCNGC 3 cut(s) 351, 388, 555
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 251
PspPPI RGGWCCY 1 cut(s) 251
PstI CTGCAG 1 cut(s) 286
RsaI GTAC 3 cut(s) 25, 133, 450
RsaNI GTAC 3 cut(s) 24, 132, 449
SaqAI TTAA 2 cut(s) 174, 501
SatI GCNGC 3 cut(s) 350, 387, 554
Sau3AI GATC 1 cut(s) 407
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 2 cut(s) 282, 390
SinI GGWCC 1 cut(s) 251
Sse9I AATT 4 cut(s) 76, 214, 537, 623
SsiI CCGC 1 cut(s) 83
SspMI CTAG 4 cut(s) 96, 507, 662, 758
StyD4I CCNGG 1 cut(s) 489
TaiI ACGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 140
TaqII GACCGA 1 cut(s) 676
TasI AATT 4 cut(s) 76, 214, 537, 623
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 6 cut(s) 137, 142, 164, 359, 733, 788
Tru1I TTAA 2 cut(s) 174, 501
Tru9I TTAA 2 cut(s) 174, 501
TscAI CASTG 1 cut(s) 359
TseFI GTSAC 1 cut(s) 651
TseI GCWGC 3 cut(s) 349, 386, 553
Tsp45I GTSAC 1 cut(s) 651
TspDTI ATGAA 7 cut(s) 24, 213, 227, 333, 380, 492, 587
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 251
XceI RCATGY 2 cut(s) 422, 560
XspI CTAG 4 cut(s) 96, 507, 662, 758
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.