Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019422.1

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Forward (+)

19586 .. 20281

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019422.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgaagaagcagacgaggaggagaaggaagaagagctcgccggcagatccgaagccggccgctccccccaaagacgacgccgagcagaaggcagtggccgcgctgacggaggccttctcttcggtctcagtcgacgacgccgtttcggcgcttcgcgaagccaaaggccacccagacaaggccgccgagattttggtccagtctctggccgacacctccgacgagccgttcacgagcttcacgtcgagcggcgtttctggtttcgataccggctccgacgagccgttcacgagctccatgtcgagcggcgtttccggttttgataccggctccgactatccgttcacgagttcctcgtccagcggcgtgtccggatctgatacgggctcgacttccgggtcgggttcgtccgaggggtttgagtcgggttgtgttcagaatttagtgagcgagaggggttttaggaataagcagaagagggtggttgcgtcggccggaacggtttcaaatgtgttgggcaaagagtatgtgaggtcgaggatgacgaagctcagtggttcaaaaaatggagatgctggtggggaagaggaagctgaacagtttctttgttcaatgcttggagatgactctgagctcaacttggctgttgttagagatgtgctttgtaagtggccattgttcattattatttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

231

Amino Acids

24.16

Weight (kDa)

4.99

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccBSI	CCGCTC	3 cut(s)	62, 249, 306
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	101, 156
AccIII	TCCGGA	1 cut(s)	371
AciI	CCGC	6 cut(s)	60, 99, 183, 249, 306, 363
AclWI	GGATC	2 cut(s)	41, 382
AcoI	YGGCCR	5 cut(s)	57, 96, 207, 492, 671
AcsI	RAATTY	1 cut(s)	439
AcyI	GRCGYC	2 cut(s)	78, 138
AfiI	CCNNNNNNNGG	2 cut(s)	178, 205
AgsI	TTSAA	3 cut(s)	507, 561, 612
AjiI	CACGTC	1 cut(s)	243
AluBI	AGCT	6 cut(s)	36, 237, 294, 550, 593, 634
AluI	AGCT	6 cut(s)	36, 237, 294, 550, 593, 634
Alw21I	GWGCWC	3 cut(s)	38, 296, 636
Alw26I	GTCTC	2 cut(s)	130, 207
AlwI	GGATC	2 cut(s)	41, 382
AlwNI	CAGNNNCTG	1 cut(s)	205
Aor13HI	TCCGGA	1 cut(s)	371
AoxI	GGCC	8 cut(s)	57, 96, 111, 166, 180, 207, 492, 671
ApoI	RAATTY	1 cut(s)	439
Asp700I	GAANNNNTTC	2 cut(s)	502, 600
AspLEI	GCGC	2 cut(s)	103, 151
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	673
BanII	GRGCYC	4 cut(s)	38, 296, 389, 636
BauI	CACGAG	3 cut(s)	232, 289, 346
Bbv12I	GWGCWC	3 cut(s)	38, 296, 636
BceAI	ACGGC	3 cut(s)	125, 211, 268
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	130, 207
BfoI	RGCGCY	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	6 cut(s)	60, 99, 183, 250, 307, 364
BlsI	GCNGC	6 cut(s)	61, 100, 184, 251, 308, 365
Bme1390I	CCNGG	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	196
BmgBI	CACGTC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	274, 331
BmrFI	CCNGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	562
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpuMI	CCSGG	1 cut(s)	397
BsaHI	GRCGYC	2 cut(s)	78, 138
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	2 cut(s)	314, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 205
Bse118I	RCCGGY	4 cut(s)	40, 55, 269, 326
Bse1I	ACTGG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	178, 205
BseMII	CTCAG	3 cut(s)	141, 565, 621
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	31, 34
BseX3I	CGGCCG	2 cut(s)	57, 492
Bsh1236I	CGCG	2 cut(s)	101, 156
Bsh1285I	CGRYCG	2 cut(s)	60, 495
BshFI	GGCC	8 cut(s)	59, 98, 113, 168, 182, 209, 494, 673
BsiEI	CGRYCG	2 cut(s)	60, 495
BsiHKAI	GWGCWC	3 cut(s)	38, 296, 636
BsiSI	CCGG	8 cut(s)	41, 56, 270, 315, 327, 372, 396, 495
BslI	CCNNNNNNNGG	2 cut(s)	178, 205
BsmAI	GTCTC	2 cut(s)	130, 207
BsnI	GGCC	8 cut(s)	59, 98, 113, 168, 182, 209, 494, 673
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	4 cut(s)	38, 296, 389, 636
Bsp13I	TCCGGA	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	46, 374
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	6 cut(s)	60, 99, 183, 249, 306, 363
BspANI	GGCC	8 cut(s)	59, 98, 113, 168, 182, 209, 494, 673
BspCNI	CTCAG	3 cut(s)	140, 564, 622
BspEI	TCCGGA	1 cut(s)	371
BspFNI	CGCG	2 cut(s)	101, 156
BspLI	GGNNCC	2 cut(s)	274, 331
BspPI	GGATC	2 cut(s)	41, 382
BspQI	GCTCTTC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	130
BsrBI	CCGCTC	3 cut(s)	62, 249, 306
BsrFI	RCCGGY	4 cut(s)	40, 55, 269, 326
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	4 cut(s)	40, 55, 269, 326
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	2 cut(s)	46, 374
BssNI	GRCGYC	2 cut(s)	78, 138
BssSI	CACGAG	3 cut(s)	232, 289, 346
Bst2BI	CACGAG	3 cut(s)	232, 289, 346
Bst4CI	ACNGT	2 cut(s)	502, 600
Bst6I	CTCTTC	4 cut(s)	26, 124, 470, 579
BstACI	GRCGYC	2 cut(s)	78, 138
BstC8I	GCNNGC	3 cut(s)	38, 42, 57
BstDEI	CTNAG	3 cut(s)	127, 551, 630
BstF5I	GGATG	1 cut(s)	546
BstFNI	CGCG	2 cut(s)	101, 156
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	103, 151
BstKTI	GATC	2 cut(s)	49, 377
BstMAI	GTCTC	2 cut(s)	130, 207
BstMBI	GATC	2 cut(s)	46, 374
BstMCI	CGRYCG	2 cut(s)	60, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 146
BstSCI	CCNGG	1 cut(s)	395
BstUI	CGCG	2 cut(s)	101, 156
BstX2I	RGATCY	2 cut(s)	46, 374
BstYI	RGATCY	2 cut(s)	46, 374
BstZI	CGGCCG	2 cut(s)	57, 492
BsuRI	GGCC	8 cut(s)	59, 98, 113, 168, 182, 209, 494, 673
BtrI	CACGTC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	546
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 559
BtuMI	TCGCGA	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	38, 42, 57
CaiI	CAGNNNCTG	1 cut(s)	205
CfoI	GCGC	2 cut(s)	103, 151
Cfr10I	RCCGGY	4 cut(s)	40, 55, 269, 326
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	3 cut(s)	86, 146, 477
CviAII	CATG	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	127, 551, 630
DpnI	GATC	2 cut(s)	48, 376
DpnII	GATC	2 cut(s)	46, 374
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	5 cut(s)	57, 96, 207, 492, 671
EagI	CGGCCG	2 cut(s)	57, 492
Eam1104I	CTCTTC	4 cut(s)	26, 124, 470, 579
EarI	CTCTTC	4 cut(s)	26, 124, 470, 579
Ecl136II	GAGCTC	3 cut(s)	36, 294, 634
EclXI	CGGCCG	2 cut(s)	57, 492
Eco147I	AGGCCT	1 cut(s)	113
Eco24I	GRGCYC	4 cut(s)	38, 296, 389, 636
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	196
Eco52I	CGGCCG	2 cut(s)	57, 492
Eco53kI	GAGCTC	3 cut(s)	36, 294, 634
EcoICRI	GAGCTC	3 cut(s)	36, 294, 634
EcoT38I	GRGCYC	4 cut(s)	38, 296, 389, 636
FaeI	CATG	1 cut(s)	301
FaiI	YATR	2 cut(s)	299, 528
FatI	CATG	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	6 cut(s)	60, 99, 183, 250, 307, 364
FokI	GGATG	1 cut(s)	553
FriOI	GRGCYC	4 cut(s)	38, 296, 389, 636
Fsp4HI	GCNGC	6 cut(s)	60, 99, 183, 250, 307, 364
GlaI	GCGC	2 cut(s)	102, 150
GluI	GCNGC	6 cut(s)	60, 99, 183, 250, 307, 364
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	8 cut(s)	59, 98, 113, 168, 182, 209, 494, 673
HapII	CCGG	8 cut(s)	41, 56, 270, 315, 327, 372, 396, 495
HgaI	GACGC	3 cut(s)	86, 146, 477
HhaI	GCGC	2 cut(s)	103, 151
Hin1I	GRCGYC	2 cut(s)	78, 138
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	2 cut(s)	101, 149
HinP1I	GCGC	2 cut(s)	101, 149
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	422, 626
HpaII	CCGG	8 cut(s)	41, 56, 270, 315, 327, 372, 396, 495
Hpy166II	GTNNAC	4 cut(s)	133, 231, 288, 345
Hpy188I	TCNGA	8 cut(s)	51, 220, 277, 334, 379, 412, 438, 631
Hpy188III	TCNNGA	5 cut(s)	155, 232, 289, 346, 372
Hpy8I	GTNNAC	4 cut(s)	133, 231, 288, 345
Hpy99I	CGWCG	7 cut(s)	80, 137, 140, 224, 247, 281, 493
HpyAV	CCTTC	3 cut(s)	18, 82, 124
HpyCH4III	ACNGT	2 cut(s)	502, 600
HpyCH4IV	ACGT	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 146
HpyF3I	CTNAG	3 cut(s)	127, 551, 630
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	2 cut(s)	78, 138
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	2 cut(s)	101, 149
Kpn2I	TCCGGA	1 cut(s)	371
KroI	GCCGGC	2 cut(s)	40, 55
KroNI	GCCGGC	2 cut(s)	42, 57
Kzo9I	GATC	2 cut(s)	46, 374
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	4 cut(s)	67, 278, 299, 335
LweI	GCATC	1 cut(s)	562
MaeII	ACGT	1 cut(s)	242
MalI	GATC	2 cut(s)	48, 376
MbiI	CCGCTC	3 cut(s)	62, 249, 306
MboI	GATC	2 cut(s)	46, 374
MboII	GAAGA	6 cut(s)	16, 40, 43, 111, 487, 596
MflI	RGATCY	2 cut(s)	46, 374
MhlI	GDGCHC	4 cut(s)	38, 296, 389, 636
MlsI	TGGCCA	1 cut(s)	673
MluCI	AATT	1 cut(s)	439
MluNI	TGGCCA	1 cut(s)	673
MlyI	GAGTC	2 cut(s)	431, 620
MmeI	TCCRAC	3 cut(s)	243, 300, 357
Mox20I	TGGCCA	1 cut(s)	673
MroI	TCCGGA	1 cut(s)	371
MroNI	GCCGGC	2 cut(s)	40, 55
MroXI	GAANNNNTTC	2 cut(s)	502, 600
MscI	TGGCCA	1 cut(s)	673
MseI	TTAA	1 cut(s)	694
Msp20I	TGGCCA	1 cut(s)	673
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	8 cut(s)	41, 56, 270, 315, 327, 372, 396, 495
MspR9I	CCNGG	1 cut(s)	397
MvnI	CGCG	2 cut(s)	101, 156
MwoI	GCNNNNNNNGC	2 cut(s)	98, 146
NaeI	GCCGGC	2 cut(s)	42, 57
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	2 cut(s)	46, 374
NgoMIV	GCCGGC	2 cut(s)	40, 55
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	2 cut(s)	274, 331
NmeAIII	GCCGAG	2 cut(s)	106, 211
NruI	TCGCGA	1 cut(s)	156
PceI	AGGCCT	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 239, 353, 542
PdiI	GCCGGC	2 cut(s)	42, 57
PdmI	GAANNNNTTC	2 cut(s)	502, 600
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	6 cut(s)	61, 100, 184, 251, 308, 365
PleI	GAGTC	2 cut(s)	430, 620
PpsI	GAGTC	2 cut(s)	430, 620
Psp124BI	GAGCTC	3 cut(s)	38, 296, 636
PspN4I	GGNNCC	2 cut(s)	274, 331
PspPI	GGNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	46, 374
RruI	TCGCGA	1 cut(s)	156
SacI	GAGCTC	3 cut(s)	38, 296, 636
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	694
SatI	GCNGC	6 cut(s)	60, 99, 183, 250, 307, 364
Sau3AI	GATC	2 cut(s)	46, 374
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	431, 620
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	4 cut(s)	38, 296, 389, 636
SetI	ASST	9 cut(s)	38, 218, 239, 245, 296, 536, 552, 595, 636
SfaNI	GCATC	1 cut(s)	562
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	1 cut(s)	439
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	6 cut(s)	60, 99, 183, 249, 306, 363
SstI	GAGCTC	3 cut(s)	38, 296, 636
StuI	AGGCCT	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	395
TaaI	ACNGT	2 cut(s)	502, 600
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	6 cut(s)	132, 245, 264, 302, 389, 536
TaqII	GACCGA	1 cut(s)	112
TasI	AATT	1 cut(s)	439
TauI	GCSGC	6 cut(s)	62, 101, 185, 252, 309, 366
Tru1I	TTAA	1 cut(s)	694
Tru9I	TTAA	1 cut(s)	694
TscAI	CASTG	2 cut(s)	99, 559
TspDTI	ATGAA	2 cut(s)	17, 670
TspGWI	ACGGA	2 cut(s)	122, 330
TspRI	CASTG	2 cut(s)	99, 559
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	2 cut(s)	502, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.