Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010754.1

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Reverse (-)

21166 .. 21832

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010754.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgacgtccaagactcggcagggatctcttgctgctacaaccaaagaggatgccgagcagtttctttgctccatgtttggagacgagtcggagataagcttgggtgtggttaaagatgtccttggtcagtgtgggtatatgaggttgaaaaggcgttggatgccttgctcgagttatcttcttcctcaagaaagagacgtgtcaaggaattgcaagattctttgggacccgatcgagtttgatgttgctaaaggagctgaatatgacgcatatagaagtattgcaaaggagcattgggattcagtgaagtcctaccatcaaaaagctgcgactgcgtattcaaacggatcacgggcatatgcaggttacctatccgagcaggccaaggctaaggcgaaattggcacgagaggtggacgagaaggcaagccaggagatctttaaagctaaaaacaaggacaagggaataaaaaatgatgacaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

161

Amino Acids

18.19

Weight (kDa)

8.57

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	353
AclWI	GGATC	2 cut(s)	31, 355
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	148, 342
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	4 cut(s)	99, 257, 326, 446
AluI	AGCT	4 cut(s)	99, 257, 326, 446
Alw26I	GTCTC	2 cut(s)	75, 189
AlwI	GGATC	2 cut(s)	31, 355
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	32, 326
AspS9I	GGNCC	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	19, 313
BccI	CCATC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	75, 189
BfuAI	ACCTGC	1 cut(s)	353
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	2 cut(s)	33, 327
BlsI	GCNGC	2 cut(s)	34, 328
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	227, 228
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	2 cut(s)	40, 150
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	121, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	121, 384
BseGI	GGATG	2 cut(s)	55, 165
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	19, 313
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	2 cut(s)	75, 189
BsmBI	CGTCTC	2 cut(s)	75, 189
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	23, 231, 347, 435
BspANI	GGCC	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	227, 228
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	31, 355
BssECI	CCNNGG	2 cut(s)	121, 384
BssMI	GATC	4 cut(s)	23, 231, 347, 435
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	2 cut(s)	121, 384
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	381, 427
BstDEI	CTNAG	1 cut(s)	390
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	55, 165
BstKTI	GATC	4 cut(s)	26, 234, 350, 438
BstMAI	GTCTC	2 cut(s)	75, 189
BstMBI	GATC	4 cut(s)	23, 231, 347, 435
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 254, 332, 401
BstNI	CCWGG	1 cut(s)	431
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	19, 313
BstX2I	RGATCY	2 cut(s)	23, 435
BstYI	RGATCY	2 cut(s)	23, 435
BsuRI	GGCC	1 cut(s)	383
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	55, 165
BtsIMutI	CAGTG	2 cut(s)	134, 309
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	381, 427
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	275
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	7 cut(s)	99, 257, 326, 383, 389, 429, 446
CviKI_1	RGCY	7 cut(s)	99, 257, 326, 383, 389, 429, 446
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	4 cut(s)	25, 233, 349, 437
DpnII	GATC	4 cut(s)	23, 231, 347, 435
DraI	TTTAAA	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	121, 384
Eco47I	GGWCC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	169
Eco91I	GGTNACC	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	121, 384
ErhI	CCWWGG	2 cut(s)	121, 384
Esp3I	CGTCTC	2 cut(s)	75, 189
FaeI	CATG	1 cut(s)	76
FaiI	YATR	8 cut(s)	74, 138, 140, 264, 271, 273, 358, 360
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	1 cut(s)	72
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	33, 327
FokI	GGATG	2 cut(s)	62, 172
Fsp4HI	GCNGC	2 cut(s)	33, 327
GluI	GCNGC	2 cut(s)	33, 327
HaeIII	GGCC	1 cut(s)	383
HgaI	GACGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	4 cut(s)	13, 86, 217, 299
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	2 cut(s)	91, 376
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	415
HpyCH4IV	ACGT	2 cut(s)	5, 198
HpyCH4V	TGCA	3 cut(s)	213, 284, 362
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 254, 332, 401
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	2 cut(s)	5, 198
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	76
KflI	GGGWCCC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	23, 231, 347, 435
LmnI	GCTCC	3 cut(s)	74, 254, 289
LpnPI	CCDG	5 cut(s)	5, 348, 365, 416, 443
Lsp1109I	GCAGC	2 cut(s)	19, 313
LweI	GCATC	2 cut(s)	40, 150
MaeII	ACGT	2 cut(s)	5, 198
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	4 cut(s)	25, 233, 349, 437
MboI	GATC	4 cut(s)	23, 231, 347, 435
MboII	GAAGA	2 cut(s)	170, 173
MfeI	CAATTG	1 cut(s)	481
MflI	RGATCY	2 cut(s)	23, 435
MluCI	AATT	3 cut(s)	208, 398, 481
MlyI	GAGTC	2 cut(s)	7, 95
MmeI	TCCRAC	2 cut(s)	69, 137
MnlI	CCTC	4 cut(s)	40, 135, 195, 403
MseI	TTAA	2 cut(s)	111, 441
MspR9I	CCNGG	1 cut(s)	431
MunI	CAATTG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	160, 254, 332, 401
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	4 cut(s)	23, 231, 347, 435
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	227, 228
NmeAIII	GCCGAG	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	217, 299
PkrI	GCNGC	2 cut(s)	34, 328
Ple19I	CGATCG	1 cut(s)	234
PleI	GAGTC	2 cut(s)	7, 94
PpsI	GAGTC	2 cut(s)	7, 94
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	429
PspEI	GGTNACC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	2 cut(s)	227, 228
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
PspXI	VCTCGAGB	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	23, 435
PvuI	CGATCG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	111, 441
SatI	GCNGC	2 cut(s)	33, 327
Sau3AI	GATC	4 cut(s)	23, 231, 347, 435
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	2 cut(s)	7, 95
ScrFI	CCNGG	1 cut(s)	431
SfaNI	GCATC	2 cut(s)	40, 150
Sfr274I	CTCGAG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	169, 186
SmoI	CTYRAG	2 cut(s)	169, 186
Sse9I	AATT	3 cut(s)	208, 398, 481
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	2 cut(s)	121, 384
TaiI	ACGT	2 cut(s)	8, 201
TaqI	TCGA	2 cut(s)	170, 234
TasI	AATT	3 cut(s)	208, 398, 481
TfiI	GAWTC	2 cut(s)	217, 299
Tru1I	TTAA	2 cut(s)	111, 441
Tru9I	TTAA	2 cut(s)	111, 441
TscAI	CASTG	2 cut(s)	134, 309
TseI	GCWGC	2 cut(s)	32, 326
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	134, 309
VpaK11BI	GGWCC	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	169
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.