Rh7CG213900

DUF1771

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001145
Physical Location & Seq
Forward (+)
19343653 .. 19344956
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG213900.1

Sequence Viewer

Length: 903 bp
ATGACGTTCGGGTTTGAAGTTGCTGCTACTAGAGAAGAGGAGGAGGCCGAACAGTTTCTTTGGTCTATGCTCGGAGACGAGTCAGAGTTAAACTTGGGTGTTGTTAGGGATGTCCTTTCTCAGTGTGGGTATGAAGTTGAAAAGGCCTTGGATGCCCTACTTGAGTTATCTTCTTCCTCAAGTGAGACATGGTATTGTGTGGGAGATACTCACCAGAGTTATAAAGAGGTTCTTGCTGGTACTACTTCCAAAGCTCACCGGAGTACGAGCTCAGATAACCTCTCTCAGGTGGTGTTGGAATCTTTGTTCAACAAATCTAAGAGGAGGAGTCCAGAAAATGAAGAACCAAGAACCATGAATTCTTGGAAGAATAGTATGAAGGAATTGCAAGAGTCATCAGGACCTGAGCTTGATGTTGCCATAAGAGCTGAATATGATGCATATAGAGGGACTGCAAAGCAGCACTGGGATTCAGTAGCGTCCCACTATCAGAAAGCTGCAACTGCGTATTCAAACGGATCGCGGGCCTATGCAGGTTACCTCTCTGAGCAGGCGAAGGTAAAGGCGAAATTGGCACGAGAGGCGGATGAGAAGGCAAGCCAGGAGATCTTCAAAGCTAGAAACAAGGATAAGTGGATAAACAATGGTGTGATAACCATTGATTTGCATGGCCAGCATGTCAAACAAGCAATGAAGCTTTTGAAAATCCACCTTCTGAAAGGAACCAATGCGCAGTCGCTTCGGCACCTCAGGGTTGTCACCGGCTGTGGTGCAGGAAAGTCTATTCTGAAACAATCAGTCATCAGACTCATCCAGAACGAAGGTATTAAATGGAACGAAGAGAATCCGGGAGCGGTATTAATCAAGCTAGCTTCACAGAGACAACTTCAGGTTCATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 Smr

Protein Analysis

300

Amino Acids

33.5

Weight (kDa)

7.13

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1771 PF08590 145 - 208 1.8e-15 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
Acc16I TGCGCA 1 cut(s) 732
Acc36I ACCTGC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 744
AccBSI CCGCTC 1 cut(s) 854
AccII CGCG 1 cut(s) 523
AciI CCGC 3 cut(s) 523, 584, 854
AclWI GGATC 1 cut(s) 526
AcoI YGGCCR 1 cut(s) 670
AcsI RAATTY 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 872
AfaI GTAC 2 cut(s) 241, 265
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 6 cut(s) 17, 140, 310, 513, 613, 703
AjnI CCWGG 1 cut(s) 600
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 9 cut(s) 254, 270, 409, 428, 497, 617, 697, 868, 872
AluI AGCT 9 cut(s) 254, 270, 409, 428, 497, 617, 697, 868, 872
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 3 cut(s) 69, 179, 874
AlwI GGATC 1 cut(s) 526
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 4 cut(s) 45, 144, 525, 670
ApeKI GCWGC 3 cut(s) 23, 460, 497
ApoI RAATTY 1 cut(s) 358
AseI ATTAAT 1 cut(s) 860
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 2 cut(s) 401, 525
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 3 cut(s) 203, 248, 751
AsuNHI GCTAGC 1 cut(s) 868
AvaII GGWCC 1 cut(s) 401
AxyI CCTNAGG 1 cut(s) 749
BalI TGGCCA 1 cut(s) 672
BanI GGYRCC 1 cut(s) 744
BanII GRGCYC 1 cut(s) 272
BauI CACGAG 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 10, 472, 484
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 1 cut(s) 602
BcnI CCSGG 1 cut(s) 849
BcoDI GTCTC 3 cut(s) 69, 179, 874
BfaI CTAG 3 cut(s) 30, 618, 869
BfuAI ACCTGC 1 cut(s) 524
BglII AGATCT 1 cut(s) 606
BisI GCNGC 3 cut(s) 24, 461, 498
BlsI GCNGC 3 cut(s) 25, 462, 499
Bme1390I CCNGG 2 cut(s) 602, 849
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 401, 525
BmiI GGNNCC 2 cut(s) 724, 746
BmrFI CCNGG 2 cut(s) 602, 849
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 142, 427
BmtI GCTAGC 1 cut(s) 872
BmuI ACTGGG 1 cut(s) 475
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 163, 182
BpuMI CCSGG 1 cut(s) 849
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 1 cut(s) 470
Bse21I CCTNAGG 1 cut(s) 749
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 1 cut(s) 602
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 4 cut(s) 115, 157, 592, 810
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 6 cut(s) 134, 285, 299, 396, 537, 763
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 4 cut(s) 53, 56, 337, 340
BseXI GCAGC 3 cut(s) 10, 472, 484
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 1 cut(s) 523
BshFI GGCC 4 cut(s) 47, 146, 527, 672
BshNI GGYRCC 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 3 cut(s) 259, 762, 848
BslFI GGGAC 2 cut(s) 463, 466
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 3 cut(s) 69, 179, 874
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 463, 466
BsnI GGCC 4 cut(s) 47, 146, 527, 672
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 518, 606
BspACI CCGC 3 cut(s) 523, 584, 854
BspANI GGCC 4 cut(s) 47, 146, 527, 672
BspCNI CTCAG 6 cut(s) 133, 284, 298, 397, 538, 762
BspFNI CGCG 1 cut(s) 523
BspLI GGNNCC 2 cut(s) 724, 746
BspMI ACCTGC 1 cut(s) 524
BspOI GCTAGC 1 cut(s) 872
BspPI GGATC 1 cut(s) 526
BspT107I GGYRCC 1 cut(s) 744
BsrBI CCGCTC 1 cut(s) 854
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 1 cut(s) 470
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 518, 606
BssSI CACGAG 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 602
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 2 cut(s) 30, 834
BstC8I GCNNGC 5 cut(s) 525, 552, 598, 674, 870
BstDEI CTNAG 7 cut(s) 120, 271, 285, 318, 405, 546, 749
BstEII GGTNACC 1 cut(s) 536
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 4 cut(s) 115, 157, 592, 810
BstFNI CGCG 1 cut(s) 523
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 2 cut(s) 521, 609
BstMAI GTCTC 3 cut(s) 69, 179, 874
BstMBI GATC 2 cut(s) 518, 606
BstMWI GCNNNNNNNGC 6 cut(s) 152, 425, 503, 572, 581, 673
BstNI CCWGG 1 cut(s) 602
BstNSI RCATGY 1 cut(s) 680
BstPI GGTNACC 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 600, 847
BstUI CGCG 1 cut(s) 523
BstV1I GCAGC 3 cut(s) 10, 472, 484
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 749
BsuRI GGCC 4 cut(s) 47, 146, 527, 672
BtsCI GGATG 4 cut(s) 115, 157, 592, 810
BtsIMutI CAGTG 2 cut(s) 128, 463
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 5 cut(s) 525, 552, 598, 674, 870
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 1 cut(s) 761
Cfr13I GGNCC 2 cut(s) 401, 525
CseI GACGC 1 cut(s) 468
Csp6I GTAC 2 cut(s) 240, 264
CviAII CATG 5 cut(s) 189, 355, 668, 677, 896
CviQI GTAC 2 cut(s) 240, 264
DdeI CTNAG 7 cut(s) 120, 271, 285, 318, 405, 546, 749
DpnI GATC 2 cut(s) 520, 608
DpnII GATC 2 cut(s) 518, 606
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 2 cut(s) 30, 834
EarI CTCTTC 2 cut(s) 30, 834
EciI GGCGGA 1 cut(s) 599
Ecl136II GAGCTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 872
Eco81I CCTNAGG 1 cut(s) 749
Eco91I GGTNACC 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 401
EcoO65I GGTNACC 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 600
EcoT14I CCWWGG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 5 cut(s) 192, 358, 671, 680, 899
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 463, 466
FatI CATG 5 cut(s) 188, 354, 667, 676, 895
FauI CCCGC 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 24, 461, 498
FokI GGATG 4 cut(s) 122, 164, 599, 797
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 24, 461, 498
FspBI CTAG 3 cut(s) 30, 618, 869
FspI TGCGCA 1 cut(s) 732
GlaI GCGC 1 cut(s) 732
GluI GCNGC 3 cut(s) 24, 461, 498
HaeIII GGCC 4 cut(s) 47, 146, 527, 672
HapII CCGG 3 cut(s) 259, 762, 848
HgaI GACGC 1 cut(s) 468
HhaI GCGC 1 cut(s) 733
Hin1II CATG 5 cut(s) 192, 358, 671, 680, 899
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 7 cut(s) 80, 299, 328, 392, 470, 807, 844
HpaII CCGG 3 cut(s) 259, 762, 848
HphI GGTGA 3 cut(s) 203, 248, 751
Hpy188I TCNGA 8 cut(s) 74, 85, 274, 492, 547, 717, 789, 806
Hpy188III TCNNGA 3 cut(s) 332, 399, 814
HpyAV CCTTC 5 cut(s) 373, 550, 586, 722, 815
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 7 cut(s) 388, 440, 455, 500, 533, 667, 773
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 425, 503, 572, 581, 673
HpyF3I CTNAG 7 cut(s) 120, 271, 285, 318, 405, 546, 749
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 5 cut(s) 192, 358, 671, 680, 899
HspAI GCGC 1 cut(s) 731
Kzo9I GATC 2 cut(s) 518, 606
LmnI GCTCC 1 cut(s) 851
Lsp1109I GCAGC 3 cut(s) 10, 472, 484
LweI GCATC 2 cut(s) 142, 427
MaeI CTAG 3 cut(s) 30, 618, 869
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 536, 757
MalI GATC 2 cut(s) 520, 608
MbiI CCGCTC 1 cut(s) 854
MboI GATC 2 cut(s) 518, 606
MboII GAAGA 7 cut(s) 47, 162, 165, 353, 379, 601, 851
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 272
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 3 cut(s) 358, 383, 569
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 4 cut(s) 89, 337, 401, 801
MmeI TCCRAC 1 cut(s) 276
Mox20I TGGCCA 1 cut(s) 672
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 54
MscI TGGCCA 1 cut(s) 672
MseI TTAA 3 cut(s) 89, 828, 860
Msp20I TGGCCA 1 cut(s) 672
MspI CCGG 3 cut(s) 259, 762, 848
MspR9I CCNGG 2 cut(s) 602, 849
MvaI CCWGG 1 cut(s) 602
MvnI CGCG 1 cut(s) 523
MwoI GCNNNNNNNGC 6 cut(s) 152, 425, 503, 572, 581, 673
NciI CCSGG 1 cut(s) 849
NdeII GATC 2 cut(s) 518, 606
NheI GCTAGC 1 cut(s) 868
NlaIII CATG 5 cut(s) 192, 358, 671, 680, 899
NlaIV GGNNCC 2 cut(s) 724, 746
NmuCI GTSAC 1 cut(s) 757
NsbI TGCGCA 1 cut(s) 732
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 680
PceI AGGCCT 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 299, 470, 844
PfoI TCCNGGA 1 cut(s) 847
PkrI GCNGC 3 cut(s) 25, 462, 499
PleI GAGTC 4 cut(s) 88, 336, 400, 801
PpsI GAGTC 4 cut(s) 88, 336, 400, 801
PpuMI RGGWCCY 1 cut(s) 401
PshBI ATTAAT 1 cut(s) 860
PsiI TTATAA 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 600
PspEI GGTNACC 1 cut(s) 536
PspGI CCWGG 1 cut(s) 600
PspN4I GGNNCC 2 cut(s) 724, 746
PspPI GGNCC 2 cut(s) 401, 525
PspPPI RGGWCCY 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 606
RsaI GTAC 2 cut(s) 241, 265
RsaNI GTAC 2 cut(s) 240, 264
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 89, 828, 860
SatI GCNGC 3 cut(s) 24, 461, 498
Sau3AI GATC 2 cut(s) 518, 606
Sau96I GGNCC 2 cut(s) 401, 525
SchI GAGTC 4 cut(s) 89, 337, 401, 801
ScrFI CCNGG 2 cut(s) 602, 849
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 2 cut(s) 142, 427
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 161, 178
SmoI CTYRAG 2 cut(s) 161, 178
Sse9I AATT 3 cut(s) 358, 383, 569
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 3 cut(s) 523, 584, 854
SspMI CTAG 3 cut(s) 30, 618, 869
SstI GAGCTC 1 cut(s) 272
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 600, 847
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 8
TasI AATT 3 cut(s) 358, 383, 569
TfiI GAWTC 3 cut(s) 299, 470, 844
Tru1I TTAA 3 cut(s) 89, 828, 860
Tru9I TTAA 3 cut(s) 89, 828, 860
TscAI CASTG 2 cut(s) 128, 470
TseFI GTSAC 1 cut(s) 757
TseI GCWGC 3 cut(s) 23, 460, 497
Tsp45I GTSAC 1 cut(s) 757
TspDTI ATGAA 6 cut(s) 147, 354, 371, 392, 707, 884
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 2 cut(s) 128, 470
VpaK11BI GGWCC 1 cut(s) 401
VspI ATTAAT 1 cut(s) 860
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 358
XceI RCATGY 1 cut(s) 680
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 3 cut(s) 30, 618, 869
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.