Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000994.1

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Forward (+)

6799 .. 7143

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000994.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgacgtccaagactcggcagggatctcttgctgctacaaccaaagaggatgccgagcagtttctttgctccatgtttggagacgagtcggagataagcttgggtgtggttaaagatgtccttggtcagtgtgggtatgaggttgaaaaggcgttggatgccttgctcgagttatcttcttcctcaagaaagagacggtgctcttcagaatatatccgcaagaactatgccgaggttcttgttggtccttctcaagcacataggagtacgagtgcaaatctgtctcagatggtttggaatctttgtttaacaactccaagagaagtcttcagaatgaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

114

Amino Acids

12.7

Weight (kDa)

7.64

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	31
AcuI	CTGAAG	2 cut(s)	189, 313
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	1 cut(s)	99
AluI	AGCT	1 cut(s)	99
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	3 cut(s)	75, 187, 288
AlwI	GGATC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	75, 187, 288
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	245
BmsI	GCATC	2 cut(s)	40, 148
BpiI	GAAGAC	1 cut(s)	319
BpuEI	CTTGAG	2 cut(s)	169, 237
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	121, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	121, 231
BseGI	GGATG	2 cut(s)	55, 163
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	3 cut(s)	75, 187, 288
BsmBI	CGTCTC	2 cut(s)	75, 187
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	31
BspQI	GCTCTTC	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	121, 231
BssMI	GATC	1 cut(s)	23
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	208
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	55, 163
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	3 cut(s)	75, 187, 288
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	55, 163
BtsIMutI	CAGTG	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	1 cut(s)	99
CviKI_1	RGCY	1 cut(s)	99
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	189, 313
Eco88I	CYCGRG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
Esp3I	CGTCTC	2 cut(s)	75, 187
FaeI	CATG	1 cut(s)	76
FaiI	YATR	5 cut(s)	74, 138, 213, 228, 261
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	62, 170
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	3 cut(s)	13, 86, 298
Hpy188I	TCNGA	4 cut(s)	91, 208, 288, 332
Hpy188III	TCNNGA	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	23
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	40, 148
MaeII	ACGT	1 cut(s)	5
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	4 cut(s)	168, 171, 195, 319
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	203
MlyI	GAGTC	2 cut(s)	7, 95
MmeI	TCCRAC	2 cut(s)	69, 135
MnlI	CCTC	4 cut(s)	40, 133, 193, 226
MseI	TTAA	2 cut(s)	111, 308
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	76
NmeAIII	GCCGAG	2 cut(s)	79, 256
PaeR7I	CTCGAG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	7, 94
PpsI	GAGTC	2 cut(s)	7, 94
PspPI	GGNCC	1 cut(s)	245
PspXI	VCTCGAGB	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	111, 308
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	7, 95
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	4 cut(s)	8, 101, 144, 237
SfaNI	GCATC	2 cut(s)	40, 148
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	3 cut(s)	167, 184, 252
SmoI	CTYRAG	3 cut(s)	167, 184, 252
SsiI	CCGC	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	2 cut(s)	111, 308
Tru9I	TTAA	2 cut(s)	111, 308
TscAI	CASTG	1 cut(s)	134
TseI	GCWGC	1 cut(s)	32
TspRI	CASTG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	245
XhoI	CTCGAG	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.