Rroxscaffold_3G00253990

DUF1771

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001145
Physical Location & Seq
Forward (+)
48156661 .. 48157567
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253990.1

Sequence Viewer

Length: 834 bp
ATGATGTCCAAGACTCAGCGTTCTGTTGCTGCTATTACCGAAGAGGATGCCGAACAGTTTCTTTGCTCCAACGAGTCTGAGATCATAAGCTTGGGTGTGGTTAAAGATGTCCTTGGTCAGTGTGGGTATGAGGTTGAAAAGGCCTTGGATGCGTTGCTCGAGTTATCTTCTTCCTCAAGTAAGAGACAGTGCTCTTCAGAATATACCCGCAAGAATTATGCCCAGGTTCTTACCGGTCCTTCTCAAGCTCATAGGAGTACGAGTGCAAATCTGTCTCAAATGGTGTTGGAATCTTTGTTCGACAACTCAAAGAGAAGTCGTCAGAATAAAGAACCAAGAACTATGAGTTCTTGGAAGTATAGTGTCAAGGAATTGCAAGATTCTTTGGGACCAGAGTTTGATGTTGCTAAGGGAGCTGAATATGATGCATACAGAAGTACTGCAAAGGAGCATTGGAATTCAGTGAAGCCAAGGCAAAGGCGAAATTGGCACGAGAGCCAGGAGATATTTAAAGCTAAAAACAAGGACAAGGGCCTAAAAAATGATGTGATGACAATTGATTTGCATGGGCAGCATGTCAACGAAGGAATGAAGCTTTTGAAGATGCACATTCAGTATGGAGCCAATACACAATCGCTTCGATTTCGCAGGGTTATTACTGGACATGGTGCACGGAAGTCTATTGTGAAACAATCTGTCATCAACTTTTTCCAGAATGAAGGTATTAAATGGACTGAAGAGAATCCAGGAGCGGTGTTAATCAAGCTAGGTTCACACAGAGACTACTTCAGATATATGGACAGGGATGTACGTAGTATATGTTCAGTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 Smr

Protein Analysis

277

Amino Acids

31.61

Weight (kDa)

9.21

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 752
AciI CCGC 2 cut(s) 208, 752
AcsI RAATTY 1 cut(s) 457
AcuI CTGAAG 3 cut(s) 180, 756, 772
AfaI GTAC 3 cut(s) 259, 439, 810
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 137, 601
AjnI CCWGG 3 cut(s) 222, 498, 745
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 6 cut(s) 90, 248, 416, 515, 595, 766
AluI AGCT 6 cut(s) 90, 248, 416, 515, 595, 766
Alw21I GWGCWC 2 cut(s) 194, 673
Alw26I GTCTC 3 cut(s) 178, 279, 774
Alw44I GTGCAC 1 cut(s) 669
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 2 cut(s) 141, 532
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 2 cut(s) 29, 571
ApoI RAATTY 1 cut(s) 457
ArsI GACNNNNNNTTYG 2 cut(s) 544, 576
AsiGI ACCGGT 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 57
AspS9I GGNCC 3 cut(s) 236, 389, 532
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 2 cut(s) 236, 389
BaeGI GKGCMC 1 cut(s) 673
BauI CACGAG 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 194, 673
BbvI GCAGC 2 cut(s) 16, 583
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 3 cut(s) 224, 500, 747
BcoDI GTCTC 3 cut(s) 178, 279, 774
BfaI CTAG 1 cut(s) 767
BisI GCNGC 2 cut(s) 30, 572
BlsI GCNGC 2 cut(s) 31, 573
BmcAI AGTACT 1 cut(s) 439
Bme1390I CCNGG 3 cut(s) 224, 500, 747
Bme18I GGWCC 2 cut(s) 236, 389
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 3 cut(s) 236, 389, 532
BmiI GGNNCC 2 cut(s) 390, 622
BmrFI CCNGG 3 cut(s) 224, 500, 747
BmsI GCATC 4 cut(s) 37, 139, 415, 594
Bpu10I CCTNAGC 1 cut(s) 408
BpuEI CTTGAG 2 cut(s) 160, 228
BsaAI YACGTR 1 cut(s) 812
BsaJI CCNNGG 4 cut(s) 112, 144, 222, 470
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 664
BseBI CCWGG 3 cut(s) 224, 500, 747
BseDI CCNNGG 4 cut(s) 112, 144, 222, 470
BseGI GGATG 3 cut(s) 52, 154, 811
BseMII CTCAG 2 cut(s) 29, 69
BseNI ACTGG 1 cut(s) 664
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 2 cut(s) 16, 583
BshFI GGCC 2 cut(s) 143, 534
BshTI ACCGGT 1 cut(s) 233
BsiHKAI GWGCWC 2 cut(s) 194, 673
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 402
BsmAI GTCTC 3 cut(s) 178, 279, 774
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 2 cut(s) 143, 534
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 194, 673
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 2 cut(s) 208, 752
BspANI GGCC 2 cut(s) 143, 534
BspCNI CTCAG 2 cut(s) 28, 70
BspLI GGNNCC 2 cut(s) 390, 622
BspQI GCTCTTC 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 664
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 4 cut(s) 112, 144, 222, 470
BssMI GATC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 3 cut(s) 112, 144, 470
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 3 cut(s) 224, 500, 747
Bst4CI ACNGT 2 cut(s) 57, 189
Bst6I CTCTTC 3 cut(s) 36, 199, 732
BstBAI YACGTR 1 cut(s) 812
BstDEI CTNAG 3 cut(s) 15, 78, 408
BstF5I GGATG 3 cut(s) 52, 154, 811
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 3 cut(s) 178, 279, 774
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 4 cut(s) 149, 413, 487, 571
BstNI CCWGG 3 cut(s) 224, 500, 747
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 3 cut(s) 222, 498, 745
BstSLI GKGCMC 1 cut(s) 673
BstSNI TACGTA 1 cut(s) 812
BstV1I GCAGC 2 cut(s) 16, 583
BsuRI GGCC 2 cut(s) 143, 534
BtsCI GGATG 3 cut(s) 52, 154, 811
BtsIMutI CAGTG 3 cut(s) 125, 194, 468
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 236, 389, 532
Csp6I GTAC 3 cut(s) 258, 438, 809
CspAI ACCGGT 1 cut(s) 233
CviAII CATG 3 cut(s) 566, 575, 665
CviQI GTAC 3 cut(s) 258, 438, 809
DdeI CTNAG 3 cut(s) 15, 78, 408
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DraI TTTAAA 1 cut(s) 511
Eam1104I CTCTTC 3 cut(s) 36, 199, 732
EarI CTCTTC 3 cut(s) 36, 199, 732
Eco105I TACGTA 1 cut(s) 812
Eco130I CCWWGG 3 cut(s) 112, 144, 470
Eco147I AGGCCT 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 236, 389
Eco57I CTGAAG 3 cut(s) 180, 756, 772
Eco88I CYCGRG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 532
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 3 cut(s) 222, 498, 745
EcoT14I CCWWGG 3 cut(s) 112, 144, 470
EcoT22I ATGCAT 1 cut(s) 430
ErhI CCWWGG 3 cut(s) 112, 144, 470
FaeI CATG 3 cut(s) 569, 578, 668
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FaqI GGGAC 1 cut(s) 402
FatI CATG 3 cut(s) 565, 574, 664
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 30, 572
FokI GGATG 3 cut(s) 59, 161, 818
Fsp4HI GCNGC 2 cut(s) 30, 572
FspBI CTAG 1 cut(s) 767
GluI GCNGC 2 cut(s) 30, 572
HaeIII GGCC 2 cut(s) 143, 534
HapII CCGG 1 cut(s) 234
Hin1II CATG 3 cut(s) 569, 578, 668
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 2 cut(s) 88, 593
HinfI GANTC 5 cut(s) 13, 74, 290, 380, 742
HpaII CCGG 1 cut(s) 234
Hpy166II GTNNAC 3 cut(s) 580, 671, 773
Hpy188I TCNGA 4 cut(s) 79, 199, 324, 791
Hpy188III TCNNGA 1 cut(s) 712
Hpy8I GTNNAC 3 cut(s) 580, 671, 773
HpyAV CCTTC 3 cut(s) 249, 578, 713
HpyCH4III ACNGT 2 cut(s) 57, 189
HpyCH4IV ACGT 1 cut(s) 811
HpyCH4V TGCA 7 cut(s) 266, 376, 428, 443, 565, 607, 671
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 413, 487, 571
HpyF3I CTNAG 3 cut(s) 15, 78, 408
HpySE526I ACGT 1 cut(s) 811
Hsp92II CATG 3 cut(s) 569, 578, 668
Kzo9I GATC 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 5 cut(s) 71, 413, 448, 620, 749
Lsp1109I GCAGC 2 cut(s) 16, 583
LweI GCATC 4 cut(s) 37, 139, 415, 594
MaeI CTAG 1 cut(s) 767
MaeII ACGT 1 cut(s) 811
MalI GATC 1 cut(s) 83
MbiI CCGCTC 1 cut(s) 752
MboI GATC 1 cut(s) 81
MboII GAAGA 6 cut(s) 53, 159, 162, 186, 613, 749
MfeI CAATTG 1 cut(s) 555
MhlI GDGCHC 2 cut(s) 194, 673
MluCI AATT 5 cut(s) 214, 371, 457, 484, 555
MlyI GAGTC 2 cut(s) 7, 83
MmeI TCCRAC 2 cut(s) 93, 267
MnlI CCTC 3 cut(s) 37, 124, 184
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 5 cut(s) 102, 510, 726, 758, 832
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 3 cut(s) 224, 500, 747
MunI CAATTG 1 cut(s) 555
MvaI CCWGG 3 cut(s) 224, 500, 747
MwoI GCNNNNNNNGC 4 cut(s) 149, 413, 487, 571
NdeII GATC 1 cut(s) 81
NlaIII CATG 3 cut(s) 569, 578, 668
NlaIV GGNNCC 2 cut(s) 390, 622
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 1 cut(s) 578
PaeR7I CTCGAG 1 cut(s) 158
PceI AGGCCT 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 290, 380, 742
PfoI TCCNGGA 1 cut(s) 745
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 2 cut(s) 31, 573
PleI GAGTC 2 cut(s) 7, 82
PpsI GAGTC 2 cut(s) 7, 82
Ppu21I YACGTR 1 cut(s) 812
Psp6I CCWGG 3 cut(s) 222, 498, 745
PspGI CCWGG 3 cut(s) 222, 498, 745
PspN4I GGNNCC 2 cut(s) 390, 622
PspPI GGNCC 3 cut(s) 236, 389, 532
PspXI VCTCGAGB 1 cut(s) 158
PsrI GAACNNNNNNTAC 1 cut(s) 805
RsaI GTAC 3 cut(s) 259, 439, 810
RsaNI GTAC 3 cut(s) 258, 438, 809
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 5 cut(s) 102, 510, 726, 758, 832
SatI GCNGC 2 cut(s) 30, 572
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 3 cut(s) 236, 389, 532
ScaI AGTACT 1 cut(s) 439
SchI GAGTC 2 cut(s) 7, 83
ScrFI CCNGG 3 cut(s) 224, 500, 747
SduI GDGCHC 2 cut(s) 194, 673
SfaNI GCATC 4 cut(s) 37, 139, 415, 594
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 236, 389
SlaI CTCGAG 1 cut(s) 158
SmlI CTYRAG 3 cut(s) 158, 175, 243
SmoI CTYRAG 3 cut(s) 158, 175, 243
SnaBI TACGTA 1 cut(s) 812
Sse9I AATT 5 cut(s) 214, 371, 457, 484, 555
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 2 cut(s) 208, 752
SspMI CTAG 1 cut(s) 767
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 222, 498, 745
StyI CCWWGG 3 cut(s) 112, 144, 470
TaaI ACNGT 2 cut(s) 57, 189
TaiI ACGT 1 cut(s) 814
TaqI TCGA 3 cut(s) 159, 300, 640
TasI AATT 5 cut(s) 214, 371, 457, 484, 555
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 3 cut(s) 290, 380, 742
Tru1I TTAA 5 cut(s) 102, 510, 726, 758, 832
Tru9I TTAA 5 cut(s) 102, 510, 726, 758, 832
TscAI CASTG 3 cut(s) 125, 194, 468
TseI GCWGC 2 cut(s) 29, 571
TspDTI ATGAA 2 cut(s) 605, 732
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 3 cut(s) 125, 194, 468
VneI GTGCAC 1 cut(s) 669
VpaK11BI GGWCC 2 cut(s) 236, 389
XapI RAATTY 1 cut(s) 457
XceI RCATGY 1 cut(s) 578
XhoI CTCGAG 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 1 cut(s) 767
ZrmI AGTACT 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.