Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333239.1

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 955

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333239.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgctcggagacgagtcggagttaaacttgggtgttgttagggatgtcctttctcagtgtgggtatgaagttgaaaaggccttggatgccctacttgagttatcttcttcctcaagtgagacatggtattgtgtgggagatactcaccagagttataaagaggttcttgctggtactacttccaaagctcaccggagtacgaactcagataacctctctcaggtggtgttggaatctttgttcaacaaatccaagaggaggagtccagaaaatgaagaaccaagaaccatgaattcttggaagaatagtatgaaggaattgcaagagtcatcaggatctgagcttgatgttgccataagagctgaatatgatgcatatagagggactgcaaagcagcactgggattcagtaacgtcccactatcagaaagctgcaactgcatattcaaacggatcgcgggcatacgcaggttacctctctgagcaggcgaaggtaaaggcgaaattggcacgagaggcggatgagaaggcaagccaggagatcttcaaagctagaaacaaggataagtggataaacaatggtgtgataaccattgatttgcatggccagcatgtcaaacaagcaatgaagcttttgaaaatccaccttctgaaaggaaccaatgcgcagtcgcttcggcacctcagggttatcaccggctgtggtgcaggaaagtctattctgaaacaatcagtcatcagactcatccagaacgaaggtattaaatggagcgaagagaatccgggagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

263

Amino Acids

29.27

Weight (kDa)

8.59

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
Acc16I	TGCGCA	1 cut(s)	666
Acc36I	ACCTGC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	678
AccII	CGCG	1 cut(s)	457
AciI	CCGC	2 cut(s)	457, 518
AclWI	GGATC	2 cut(s)	343, 460
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	292
AfaI	GTAC	2 cut(s)	175, 199
AfiI	CCNNNNNNNGG	2 cut(s)	220, 258
AgsI	TTSAA	5 cut(s)	74, 244, 447, 547, 637
AjnI	CCWGG	1 cut(s)	534
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	6 cut(s)	188, 343, 362, 431, 551, 631
AluI	AGCT	6 cut(s)	188, 343, 362, 431, 551, 631
Alw26I	GTCTC	2 cut(s)	3, 113
AlwI	GGATC	2 cut(s)	343, 460
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	78, 604
ApeKI	GCWGC	2 cut(s)	394, 431
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	667
AsuC2I	CCSGG	1 cut(s)	783
AsuHPI	GGTGA	3 cut(s)	137, 182, 685
AxyI	CCTNAGG	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	606
BanI	GGYRCC	1 cut(s)	678
BauI	CACGAG	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	406, 418
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	783
BcoDI	GTCTC	2 cut(s)	3, 113
BfaI	CTAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	540
BisI	GCNGC	2 cut(s)	395, 432
BlsI	GCNGC	2 cut(s)	396, 433
Bme1390I	CCNGG	2 cut(s)	536, 783
BmiI	GGNNCC	2 cut(s)	658, 680
BmrFI	CCNGG	2 cut(s)	536, 783
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	76, 361
BmuI	ACTGGG	1 cut(s)	409
BpuEI	CTTGAG	2 cut(s)	97, 116
BpuMI	CCSGG	1 cut(s)	783
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 258
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	1 cut(s)	404
Bse21I	CCTNAGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	4 cut(s)	49, 91, 526, 744
BseLI	CCNNNNNNNGG	2 cut(s)	220, 258
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	6 cut(s)	68, 219, 233, 330, 471, 697
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	2 cut(s)	271, 274
BseXI	GCAGC	2 cut(s)	406, 418
BsgI	GTGCAG	1 cut(s)	726
Bsh1236I	CGCG	1 cut(s)	457
BshFI	GGCC	2 cut(s)	80, 606
BshNI	GGYRCC	1 cut(s)	678
BsiSI	CCGG	3 cut(s)	193, 696, 782
BslFI	GGGAC	2 cut(s)	397, 400
BslI	CCNNNNNNNGG	2 cut(s)	220, 258
BsmAI	GTCTC	2 cut(s)	3, 113
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	397, 400
BsnI	GGCC	2 cut(s)	80, 606
Bsp143I	GATC	3 cut(s)	335, 452, 540
BspACI	CCGC	2 cut(s)	457, 518
BspANI	GGCC	2 cut(s)	80, 606
BspCNI	CTCAG	6 cut(s)	67, 218, 232, 331, 472, 696
BspFNI	CGCG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	658, 680
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	2 cut(s)	343, 460
BspT107I	GGYRCC	1 cut(s)	678
BsrDI	GCAATG	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	3 cut(s)	335, 452, 540
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	536
Bst6I	CTCTTC	1 cut(s)	768
BstC8I	GCNNGC	4 cut(s)	459, 486, 532, 608
BstDEI	CTNAG	6 cut(s)	54, 205, 219, 339, 480, 683
BstEII	GGTNACC	1 cut(s)	470
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstF5I	GGATG	4 cut(s)	49, 91, 526, 744
BstFNI	CGCG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	3 cut(s)	338, 455, 543
BstMAI	GTCTC	2 cut(s)	3, 113
BstMBI	GATC	3 cut(s)	335, 452, 540
BstMWI	GCNNNNNNNGC	6 cut(s)	86, 359, 437, 506, 515, 607
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	614
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	534, 781
BstUI	CGCG	1 cut(s)	457
BstV1I	GCAGC	2 cut(s)	406, 418
BstX2I	RGATCY	2 cut(s)	335, 540
BstYI	RGATCY	2 cut(s)	335, 540
Bsu36I	CCTNAGG	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	80, 606
BtsCI	GGATG	4 cut(s)	49, 91, 526, 744
BtsIMutI	CAGTG	2 cut(s)	62, 397
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	4 cut(s)	459, 486, 532, 608
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	667
Cfr10I	RCCGGY	1 cut(s)	695
Csp6I	GTAC	2 cut(s)	174, 198
CviAII	CATG	4 cut(s)	123, 289, 602, 611
CviQI	GTAC	2 cut(s)	174, 198
DdeI	CTNAG	6 cut(s)	54, 205, 219, 339, 480, 683
DpnI	GATC	3 cut(s)	337, 454, 542
DpnII	GATC	3 cut(s)	335, 452, 540
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
EciI	GGCGGA	1 cut(s)	533
Eco130I	CCWWGG	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	80
Eco81I	CCTNAGG	1 cut(s)	683
Eco91I	GGTNACC	1 cut(s)	470
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	4 cut(s)	126, 292, 605, 614
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	2 cut(s)	397, 400
FatI	CATG	4 cut(s)	122, 288, 601, 610
FauI	CCCGC	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	395, 432
FokI	GGATG	4 cut(s)	56, 98, 533, 731
Fsp4HI	GCNGC	2 cut(s)	395, 432
FspBI	CTAG	1 cut(s)	552
FspI	TGCGCA	1 cut(s)	666
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	2 cut(s)	395, 432
HaeIII	GGCC	2 cut(s)	80, 606
HapII	CCGG	3 cut(s)	193, 696, 782
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	4 cut(s)	126, 292, 605, 614
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	7 cut(s)	14, 233, 262, 326, 404, 741, 778
HpaII	CCGG	3 cut(s)	193, 696, 782
HphI	GGTGA	3 cut(s)	137, 182, 685
Hpy188I	TCNGA	9 cut(s)	8, 19, 208, 340, 426, 481, 651, 723, 740
Hpy188III	TCNNGA	3 cut(s)	266, 333, 748
HpyAV	CCTTC	5 cut(s)	307, 484, 520, 656, 749
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	7 cut(s)	322, 374, 389, 434, 440, 601, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	86, 359, 437, 506, 515, 607
HpyF3I	CTNAG	6 cut(s)	54, 205, 219, 339, 480, 683
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	4 cut(s)	126, 292, 605, 614
HspAI	GCGC	1 cut(s)	665
Kzo9I	GATC	3 cut(s)	335, 452, 540
LmnI	GCTCC	2 cut(s)	768, 785
Lsp1109I	GCAGC	2 cut(s)	406, 418
LweI	GCATC	2 cut(s)	76, 361
MaeI	CTAG	1 cut(s)	552
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	409, 470
MalI	GATC	3 cut(s)	337, 454, 542
MboI	GATC	3 cut(s)	335, 452, 540
MboII	GAAGA	6 cut(s)	96, 99, 287, 313, 535, 785
MflI	RGATCY	2 cut(s)	335, 540
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	3 cut(s)	292, 317, 503
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	4 cut(s)	23, 271, 335, 735
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	9 cut(s)	121, 154, 224, 249, 252, 374, 485, 508, 692
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	606
MseI	TTAA	2 cut(s)	23, 762
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	3 cut(s)	193, 696, 782
MspR9I	CCNGG	2 cut(s)	536, 783
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	457
MwoI	GCNNNNNNNGC	6 cut(s)	86, 359, 437, 506, 515, 607
NciI	CCSGG	1 cut(s)	783
NdeII	GATC	3 cut(s)	335, 452, 540
NlaIII	CATG	4 cut(s)	126, 292, 605, 614
NlaIV	GGNNCC	2 cut(s)	658, 680
NsbI	TGCGCA	1 cut(s)	666
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	614
PceI	AGGCCT	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	233, 404, 778
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	2 cut(s)	396, 433
PleI	GAGTC	4 cut(s)	22, 270, 334, 735
PpsI	GAGTC	4 cut(s)	22, 270, 334, 735
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	534
PspEI	GGTNACC	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	658, 680
PstNI	CAGNNNCTG	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	335, 540
RsaI	GTAC	2 cut(s)	175, 199
RsaNI	GTAC	2 cut(s)	174, 198
SaqAI	TTAA	2 cut(s)	23, 762
SatI	GCNGC	2 cut(s)	395, 432
Sau3AI	GATC	3 cut(s)	335, 452, 540
SchI	GAGTC	4 cut(s)	23, 271, 335, 735
ScrFI	CCNGG	2 cut(s)	536, 783
SfaNI	GCATC	2 cut(s)	76, 361
SmlI	CTYRAG	2 cut(s)	95, 112
SmoI	CTYRAG	2 cut(s)	95, 112
Sse9I	AATT	3 cut(s)	292, 317, 503
SseBI	AGGCCT	1 cut(s)	80
SsiI	CCGC	2 cut(s)	457, 518
SspMI	CTAG	1 cut(s)	552
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	534, 781
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	416
TasI	AATT	3 cut(s)	292, 317, 503
TfiI	GAWTC	3 cut(s)	233, 404, 778
Tru1I	TTAA	2 cut(s)	23, 762
Tru9I	TTAA	2 cut(s)	23, 762
TscAI	CASTG	2 cut(s)	62, 404
TseI	GCWGC	2 cut(s)	394, 431
TspDTI	ATGAA	5 cut(s)	81, 288, 305, 326, 641
TspGWI	ACGGA	1 cut(s)	465
TspRI	CASTG	2 cut(s)	62, 404
XagI	CCTNNNNNAGG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	1 cut(s)	614
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.