Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Reverse (-)

48137029 .. 48137961

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGACGTCCAAGACTCGGCAGGGATCTGTTGCTGCTACAACCAAAGAGGATGCCGAGCAGTTTCTTTGCTCCATGTTTGGAGACGAGTCGGAGATAAGCTTGGGTGTGGTTAAAGATGTCCTTGGTCAGTGTGGTTATGAGGTTGAAAAGGCGTTGGATGCCTTGCTCGAGTTATCTTCTTCCTCAAGAAAGAGACGGTGCTCTTCAGAATATATCCGCAAGAACTATGCCGAGGTTTTTGTTGGTCCTTCTCAAGCACATAGGAGTACGAGTGCAAATCTGTCTCAGATGGTGTTGGAATCTTTGTTTAACAACTCCAAGAGAAGTCTTCCGAATGAAGAACCAAGAACTATGAATTCTTGGAAGAACAGGGTCAAGGAATTGCAAGATTCTTTGGGACTCGAGTTTCATGTTGCTAAAGGAGCTGAATATGACGCATATAGAAGTACTGCAAAGGAGCATTGGGATTCAGTGAAGTCCTACCATCAAAAAGCTGCGACTGCGTATTCAAACGGATCACGGGCACATGCAGGTTACCTATTCGAGCAGGCCAAGGCAAAGGCGAAATTGGCACGAGAGGTGGACGAGAAGGCAAGCCAGGAGATCTTTAAAGCTACAAACAAGGACAAGGGCATAAAAAATGATGTGATGACAATTGATTTGCATGGGCAACATGTGAACGAAGCGATGAAGTTTTTGAAGATGCACATTCAGTATGGAACCAATACACAATCGCTTCGATTCCTCAGGGTTATTACAGGACATGGTGCAGGGAAGTCTATTGTGAAACAATCTGTCATCAAATTTTTCCAGAAAGAAGGTATCAAATGGAGTGAAGAGAATCCAGGAGCGTTGTTAATCAAGCTAGGTTCACAGAGAGACTACTTCAGATTTATGGACAGGGATGTACGTAGTATCTGTTCAGTCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

310

Amino Acids

34.87

Weight (kDa)

9.22

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1771	PF08590	144 - 207	4.5e-14	Domain of unknown function (DUF1771)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	521
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	31, 523
AcsI	RAATTY	2 cut(s)	355, 803
AcuI	CTGAAG	2 cut(s)	189, 871
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	268, 448, 909
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	3 cut(s)	146, 510, 700
AjnI	CCWGG	2 cut(s)	597, 844
AluBI	AGCT	5 cut(s)	99, 425, 494, 614, 865
AluI	AGCT	5 cut(s)	99, 425, 494, 614, 865
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	4 cut(s)	75, 187, 288, 873
AlwI	GGATC	2 cut(s)	31, 523
Ama87I	CYCGRG	2 cut(s)	167, 401
AoxI	GGCC	1 cut(s)	549
ApeKI	GCWGC	2 cut(s)	32, 494
ApoI	RAATTY	2 cut(s)	355, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	643, 675
AspS9I	GGNCC	1 cut(s)	245
AvaI	CYCGRG	2 cut(s)	167, 401
AvaII	GGWCC	1 cut(s)	245
AxyI	CCTNAGG	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	526
BauI	CACGAG	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	19, 481
BccI	CCATC	2 cut(s)	283, 492
BciT130I	CCWGG	2 cut(s)	599, 846
BcoDI	GTCTC	4 cut(s)	75, 187, 288, 873
BfaI	CTAG	1 cut(s)	866
BfuAI	ACCTGC	1 cut(s)	521
BglII	AGATCT	1 cut(s)	603
BisI	GCNGC	2 cut(s)	33, 495
BlsI	GCNGC	2 cut(s)	34, 496
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	599, 846
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	2 cut(s)	167, 401
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	721
BmrFI	CCNGG	2 cut(s)	599, 846
BmsI	GCATC	3 cut(s)	40, 148, 693
BpiI	GAAGAC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	169, 237
BsaAI	YACGTR	1 cut(s)	911
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	121, 231, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse21I	CCTNAGG	1 cut(s)	746
BseBI	CCWGG	2 cut(s)	599, 846
BseDI	CCNNGG	3 cut(s)	121, 231, 552
BseGI	GGATG	3 cut(s)	55, 163, 910
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	299, 760
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	19, 481
BsgI	GTGCAG	1 cut(s)	789
BshFI	GGCC	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	2 cut(s)	167, 401
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	4 cut(s)	75, 187, 288, 873
BsmBI	CGTCTC	2 cut(s)	75, 187
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	551
BsoBI	CYCGRG	2 cut(s)	167, 401
Bsp1286I	GDGCHC	2 cut(s)	203, 526
Bsp143I	GATC	3 cut(s)	23, 515, 603
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	551
BspCNI	CTCAG	2 cut(s)	298, 759
BspLI	GGNNCC	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	2 cut(s)	31, 523
BspQI	GCTCTTC	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	121, 231, 552
BssMI	GATC	3 cut(s)	23, 515, 603
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	573
BssT1I	CCWWGG	2 cut(s)	121, 552
Bst2BI	CACGAG	1 cut(s)	573
Bst2UI	CCWGG	2 cut(s)	599, 846
Bst4CI	ACNGT	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	208, 831
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	2 cut(s)	549, 595
BstDEI	CTNAG	2 cut(s)	285, 746
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	55, 163, 910
BstKTI	GATC	3 cut(s)	26, 518, 606
BstMAI	GTCTC	4 cut(s)	75, 187, 288, 873
BstMBI	GATC	3 cut(s)	23, 515, 603
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 422, 500, 569
BstNI	CCWGG	2 cut(s)	599, 846
BstNSI	RCATGY	2 cut(s)	530, 677
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	597, 844
BstSLI	GKGCMC	1 cut(s)	526
BstSNI	TACGTA	1 cut(s)	911
BstV1I	GCAGC	2 cut(s)	19, 481
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	2 cut(s)	23, 603
BstYI	RGATCY	2 cut(s)	23, 603
Bsu36I	CCTNAGG	1 cut(s)	746
BsuRI	GGCC	1 cut(s)	551
BtgZI	GCGATG	1 cut(s)	701
BtsCI	GGATG	3 cut(s)	55, 163, 910
BtsIMutI	CAGTG	2 cut(s)	134, 477
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	2 cut(s)	549, 595
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	3 cut(s)	267, 447, 908
CviAII	CATG	6 cut(s)	73, 410, 527, 665, 674, 764
CviJI	RGCY	7 cut(s)	99, 425, 494, 551, 597, 614, 865
CviKI_1	RGCY	7 cut(s)	99, 425, 494, 551, 597, 614, 865
CviQI	GTAC	3 cut(s)	267, 447, 908
DdeI	CTNAG	2 cut(s)	285, 746
DpnI	GATC	3 cut(s)	25, 517, 605
DpnII	GATC	3 cut(s)	23, 515, 603
DraI	TTTAAA	1 cut(s)	610
Eam1104I	CTCTTC	2 cut(s)	208, 831
EarI	CTCTTC	2 cut(s)	208, 831
Eco105I	TACGTA	1 cut(s)	911
Eco130I	CCWWGG	2 cut(s)	121, 552
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	2 cut(s)	189, 871
Eco81I	CCTNAGG	1 cut(s)	746
Eco88I	CYCGRG	2 cut(s)	167, 401
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	597, 844
EcoT14I	CCWWGG	2 cut(s)	121, 552
ErhI	CCWWGG	2 cut(s)	121, 552
Esp3I	CGTCTC	2 cut(s)	75, 187
FaeI	CATG	6 cut(s)	76, 413, 530, 668, 677, 767
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	6 cut(s)	72, 409, 526, 664, 673, 763
Fnu4HI	GCNGC	2 cut(s)	33, 495
FokI	GGATG	3 cut(s)	62, 170, 917
Fsp4HI	GCNGC	2 cut(s)	33, 495
FspBI	CTAG	1 cut(s)	866
GluI	GCNGC	2 cut(s)	33, 495
HaeIII	GGCC	1 cut(s)	551
HgaI	GACGC	1 cut(s)	443
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	76, 413, 530, 668, 677, 767
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	8 cut(s)	13, 86, 299, 389, 399, 467, 741, 841
Hpy166II	GTNNAC	3 cut(s)	583, 679, 872
Hpy188I	TCNGA	5 cut(s)	91, 208, 288, 333, 890
Hpy188III	TCNNGA	2 cut(s)	186, 811
Hpy8I	GTNNAC	3 cut(s)	583, 679, 872
HpyAV	CCTTC	3 cut(s)	258, 583, 812
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	2 cut(s)	5, 910
HpyCH4V	TGCA	7 cut(s)	275, 385, 452, 530, 664, 706, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 422, 500, 569
HpyF3I	CTNAG	2 cut(s)	285, 746
HpySE526I	ACGT	2 cut(s)	5, 910
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	76, 413, 530, 668, 677, 767
Kzo9I	GATC	3 cut(s)	23, 515, 603
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	4 cut(s)	74, 422, 457, 848
Lsp1109I	GCAGC	2 cut(s)	19, 481
LweI	GCATC	3 cut(s)	40, 148, 693
MaeI	CTAG	1 cut(s)	866
MaeII	ACGT	2 cut(s)	5, 910
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	25, 517, 605
MboI	GATC	3 cut(s)	23, 515, 603
MboII	GAAGA	8 cut(s)	168, 171, 195, 320, 350, 376, 712, 848
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	2 cut(s)	23, 603
MhlI	GDGCHC	2 cut(s)	203, 526
MluCI	AATT	5 cut(s)	355, 380, 566, 654, 803
MlyI	GAGTC	3 cut(s)	7, 95, 393
MmeI	TCCRAC	3 cut(s)	69, 135, 276
MnlI	CCTC	6 cut(s)	40, 133, 193, 226, 571, 755
MseI	TTAA	5 cut(s)	111, 309, 609, 857, 931
MspR9I	CCNGG	2 cut(s)	599, 846
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	2 cut(s)	599, 846
MwoI	GCNNNNNNNGC	4 cut(s)	158, 422, 500, 569
NdeII	GATC	3 cut(s)	23, 515, 603
NlaIII	CATG	6 cut(s)	76, 413, 530, 668, 677, 767
NlaIV	GGNNCC	1 cut(s)	721
NmeAIII	GCCGAG	2 cut(s)	79, 256
NspI	RCATGY	2 cut(s)	530, 677
PaeR7I	CTCGAG	2 cut(s)	167, 401
PciI	ACATGT	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	208
PfeI	GAWTC	5 cut(s)	299, 389, 467, 741, 841
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	2 cut(s)	34, 496
PleI	GAGTC	3 cut(s)	7, 94, 393
PpsI	GAGTC	3 cut(s)	7, 94, 393
Ppu21I	YACGTR	1 cut(s)	911
PscI	ACATGT	1 cut(s)	673
Psp6I	CCWGG	2 cut(s)	597, 844
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	2 cut(s)	597, 844
PspN4I	GGNNCC	1 cut(s)	721
PspPI	GGNCC	1 cut(s)	245
PspXI	VCTCGAGB	2 cut(s)	167, 401
PsrI	GAACNNNNNNTAC	1 cut(s)	904
PsuI	RGATCY	2 cut(s)	23, 603
RsaI	GTAC	3 cut(s)	268, 448, 909
RsaNI	GTAC	3 cut(s)	267, 447, 908
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	5 cut(s)	111, 309, 609, 857, 931
SatI	GCNGC	2 cut(s)	33, 495
Sau3AI	GATC	3 cut(s)	23, 515, 603
Sau96I	GGNCC	1 cut(s)	245
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	3 cut(s)	7, 95, 393
ScrFI	CCNGG	2 cut(s)	599, 846
SduI	GDGCHC	2 cut(s)	203, 526
SfaNI	GCATC	3 cut(s)	40, 148, 693
Sfr274I	CTCGAG	2 cut(s)	167, 401
SinI	GGWCC	1 cut(s)	245
SlaI	CTCGAG	2 cut(s)	167, 401
SmlI	CTYRAG	4 cut(s)	167, 184, 252, 401
SmoI	CTYRAG	4 cut(s)	167, 184, 252, 401
SnaBI	TACGTA	1 cut(s)	911
Sse9I	AATT	5 cut(s)	355, 380, 566, 654, 803
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	866
StyD4I	CCNGG	2 cut(s)	597, 844
StyI	CCWWGG	2 cut(s)	121, 552
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	2 cut(s)	8, 913
TaqI	TCGA	4 cut(s)	168, 402, 543, 739
TasI	AATT	5 cut(s)	355, 380, 566, 654, 803
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	5 cut(s)	299, 389, 467, 741, 841
Tru1I	TTAA	5 cut(s)	111, 309, 609, 857, 931
Tru9I	TTAA	5 cut(s)	111, 309, 609, 857, 931
TscAI	CASTG	2 cut(s)	134, 477
TseI	GCWGC	2 cut(s)	32, 494
TspDTI	ATGAA	4 cut(s)	351, 368, 398, 704
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	134, 477
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	2 cut(s)	355, 803
XceI	RCATGY	2 cut(s)	530, 677
XhoI	CTCGAG	2 cut(s)	167, 401
XspI	CTAG	1 cut(s)	866
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.