DUF1771
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 765 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 400 |
| Acc36I | ACCTGC | 1 cut(s) | 1217 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 205 |
| AccBSI | CCGCTC | 3 cut(s) | 62, 252, 309 |
| AccI | GTMKAC | 1 cut(s) | 132 |
| AccII | CGCG | 2 cut(s) | 101, 156 |
| AccIII | TCCGGA | 1 cut(s) | 374 |
| AciI | CCGC | 7 cut(s) | 60, 99, 183, 252, 309, 366, 887 |
| AclWI | GGATC | 3 cut(s) | 41, 385, 1219 |
| AcoI | YGGCCR | 4 cut(s) | 57, 96, 207, 495 |
| AcsI | RAATTY | 1 cut(s) | 442 |
| AcuI | CTGAAG | 2 cut(s) | 1080, 1551 |
| AcyI | GRCGYC | 2 cut(s) | 78, 138 |
| AfaI | GTAC | 3 cut(s) | 829, 937, 1254 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 178, 205, 958, 1159 |
| AgsI | TTSAA | 7 cut(s) | 564, 615, 689, 1206, 1387, 1427, 1582 |
| AjiI | CACGTC | 1 cut(s) | 246 |
| Alw21I | GWGCWC | 3 cut(s) | 38, 299, 639 |
| Alw26I | GTCTC | 2 cut(s) | 130, 207 |
| AlwI | GGATC | 3 cut(s) | 41, 385, 1219 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 205 |
| Aor13HI | TCCGGA | 1 cut(s) | 374 |
| AoxI | GGCC | 8 cut(s) | 57, 96, 111, 166, 180, 207, 495, 693 |
| ApeKI | GCWGC | 3 cut(s) | 578, 1190, 1357 |
| ApoI | RAATTY | 1 cut(s) | 442 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 505, 603 |
| AspLEI | GCGC | 2 cut(s) | 103, 151 |
| AspS9I | GGNCC | 2 cut(s) | 196, 1055 |
| AsuC2I | CCSGG | 2 cut(s) | 400, 741 |
| AsuHPI | GGTGA | 1 cut(s) | 866 |
| AsuII | TTCGAA | 1 cut(s) | 509 |
| AvaII | GGWCC | 2 cut(s) | 196, 1055 |
| AxyI | CCTNAGG | 1 cut(s) | 1433 |
| BanII | GRGCYC | 5 cut(s) | 38, 299, 392, 639, 929 |
| BauI | CACGAG | 3 cut(s) | 235, 292, 349 |
| Bbv12I | GWGCWC | 3 cut(s) | 38, 299, 639 |
| BbvI | GCAGC | 3 cut(s) | 565, 1177, 1369 |
| BccI | CCATC | 1 cut(s) | 1061 |
| BceAI | ACGGC | 3 cut(s) | 125, 214, 271 |
| BciVI | GTATCC | 1 cut(s) | 860 |
| BcnI | CCSGG | 2 cut(s) | 400, 741 |
| BcoDI | GTCTC | 2 cut(s) | 130, 207 |
| BfaI | CTAG | 4 cut(s) | 900, 1311, 1466, 1562 |
| BfmI | CTRYAG | 3 cut(s) | 757, 1086, 1194 |
| BfoI | RGCGCY | 1 cut(s) | 152 |
| BfuAI | ACCTGC | 1 cut(s) | 1217 |
| BfuI | GTATCC | 1 cut(s) | 860 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 146 |
| BisI | GCNGC | 9 cut(s) | 60, 99, 183, 253, 310, 367, 579, 1191, 1358 |
| BlsI | GCNGC | 9 cut(s) | 61, 100, 184, 254, 311, 368, 580, 1192, 1359 |
| Bme1390I | CCNGG | 2 cut(s) | 400, 741 |
| Bme18I | GGWCC | 2 cut(s) | 196, 1055 |
| BmgBI | CACGTC | 1 cut(s) | 246 |
| BmgT120I | GGNCC | 2 cut(s) | 196, 1055 |
| BmiI | GGNNCC | 3 cut(s) | 277, 334, 1056 |
| BmrFI | CCNGG | 2 cut(s) | 400, 741 |
| BmrI | ACTGGG | 1 cut(s) | 1168 |
| BmsI | GCATC | 1 cut(s) | 827 |
| BmuI | ACTGGG | 1 cut(s) | 1168 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 101, 133 |
| Bpu14I | TTCGAA | 1 cut(s) | 509 |
| BpuEI | CTTGAG | 1 cut(s) | 731 |
| BpuMI | CCSGG | 2 cut(s) | 400, 741 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1125 |
| BsaHI | GRCGYC | 2 cut(s) | 78, 138 |
| BsaI | GGTCTC | 1 cut(s) | 130 |
| BsaJI | CCNNGG | 3 cut(s) | 414, 696, 843 |
| BsaWI | WCCGGW | 3 cut(s) | 317, 374, 876 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 178, 205, 958, 1159 |
| Bse118I | RCCGGY | 4 cut(s) | 40, 55, 272, 329 |
| Bse1I | ACTGG | 3 cut(s) | 199, 793, 1163 |
| Bse21I | CCTNAGG | 1 cut(s) | 1433 |
| Bse3DI | GCAATG | 1 cut(s) | 1380 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1125 |
| BseAI | TCCGGA | 1 cut(s) | 374 |
| BseDI | CCNNGG | 3 cut(s) | 414, 696, 843 |
| BseGI | GGATG | 5 cut(s) | 549, 631, 839, 916, 1454 |
| BseJI | GATNNNNATC | 1 cut(s) | 1125 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 178, 205, 958, 1159 |
| BseMI | GCAATG | 1 cut(s) | 1380 |
| BseMII | CTCAG | 5 cut(s) | 141, 568, 624, 1230, 1447 |
| BseNI | ACTGG | 3 cut(s) | 199, 793, 1163 |
| BseRI | GAGGAG | 2 cut(s) | 31, 34 |
| BseX3I | CGGCCG | 2 cut(s) | 57, 495 |
| BseXI | GCAGC | 3 cut(s) | 565, 1177, 1369 |
| BseYI | CCCAGC | 1 cut(s) | 581 |
| Bsh1236I | CGCG | 2 cut(s) | 101, 156 |
| Bsh1285I | CGRYCG | 3 cut(s) | 60, 498, 745 |
| BshFI | GGCC | 8 cut(s) | 59, 98, 113, 168, 182, 209, 497, 695 |
| BsiEI | CGRYCG | 3 cut(s) | 60, 498, 745 |
| BsiHKAI | GWGCWC | 3 cut(s) | 38, 299, 639 |
| BslFI | GGGAC | 1 cut(s) | 1068 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 178, 205, 958, 1159 |
| BsmAI | GTCTC | 2 cut(s) | 130, 207 |
| BsmFI | GGGAC | 1 cut(s) | 1068 |
| BsnI | GGCC | 8 cut(s) | 59, 98, 113, 168, 182, 209, 497, 695 |
| Bso31I | GGTCTC | 1 cut(s) | 130 |
| Bsp119I | TTCGAA | 1 cut(s) | 509 |
| Bsp1286I | GDGCHC | 5 cut(s) | 38, 299, 392, 639, 929 |
| Bsp13I | TCCGGA | 1 cut(s) | 374 |
| Bsp143I | GATC | 3 cut(s) | 46, 377, 1211 |
| Bsp68I | TCGCGA | 1 cut(s) | 156 |
| BspACI | CCGC | 7 cut(s) | 60, 99, 183, 252, 309, 366, 887 |
| BspANI | GGCC | 8 cut(s) | 59, 98, 113, 168, 182, 209, 497, 695 |
| BspCNI | CTCAG | 5 cut(s) | 140, 567, 625, 1231, 1446 |
| BspEI | TCCGGA | 1 cut(s) | 374 |
| BspFNI | CGCG | 2 cut(s) | 101, 156 |
| BspLI | GGNNCC | 3 cut(s) | 277, 334, 1056 |
| BspMAI | CTGCAG | 1 cut(s) | 1090 |
| BspMI | ACCTGC | 1 cut(s) | 1217 |
| BspPI | GGATC | 3 cut(s) | 41, 385, 1219 |
| BspQI | GCTCTTC | 1 cut(s) | 26 |
| BspT104I | TTCGAA | 1 cut(s) | 509 |
| BspTNI | GGTCTC | 1 cut(s) | 130 |
| BsrBI | CCGCTC | 3 cut(s) | 62, 252, 309 |
| BsrDI | GCAATG | 1 cut(s) | 1380 |
| BsrFI | RCCGGY | 4 cut(s) | 40, 55, 272, 329 |
| BsrI | ACTGG | 3 cut(s) | 199, 793, 1163 |
| BssAI | RCCGGY | 4 cut(s) | 40, 55, 272, 329 |
| BssECI | CCNNGG | 3 cut(s) | 414, 696, 843 |
| BssMI | GATC | 3 cut(s) | 46, 377, 1211 |
| BssNI | GRCGYC | 2 cut(s) | 78, 138 |
| BssSI | CACGAG | 3 cut(s) | 235, 292, 349 |
| BssT1I | CCWWGG | 1 cut(s) | 696 |
| Bst2BI | CACGAG | 3 cut(s) | 235, 292, 349 |
| Bst4CI | ACNGT | 3 cut(s) | 505, 603, 795 |
| Bst6I | CTCTTC | 5 cut(s) | 26, 124, 473, 582, 1527 |
| BstACI | GRCGYC | 2 cut(s) | 78, 138 |
| BstBI | TTCGAA | 1 cut(s) | 509 |
| BstC8I | GCNNGC | 8 cut(s) | 38, 42, 57, 897, 1150, 1154, 1224, 1291 |
| BstDEI | CTNAG | 5 cut(s) | 127, 554, 633, 1239, 1433 |
| BstF5I | GGATG | 5 cut(s) | 549, 631, 839, 916, 1454 |
| BstFNI | CGCG | 2 cut(s) | 101, 156 |
| BstH2I | RGCGCY | 1 cut(s) | 152 |
| BstHHI | GCGC | 2 cut(s) | 103, 151 |
| BstKTI | GATC | 3 cut(s) | 49, 380, 1214 |
| BstMAI | GTCTC | 2 cut(s) | 130, 207 |
| BstMBI | GATC | 3 cut(s) | 46, 377, 1211 |
| BstMCI | CGRYCG | 3 cut(s) | 60, 498, 745 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 98, 146, 1080, 1196, 1274, 1357 |
| BstNSI | RCATGY | 1 cut(s) | 1226 |
| BstSCI | CCNGG | 2 cut(s) | 398, 739 |
| BstSFI | CTRYAG | 3 cut(s) | 757, 1086, 1194 |
| BstUI | CGCG | 2 cut(s) | 101, 156 |
| BstV1I | GCAGC | 3 cut(s) | 565, 1177, 1369 |
| BstX2I | RGATCY | 2 cut(s) | 46, 377 |
| BstYI | RGATCY | 2 cut(s) | 46, 377 |
| BstZI | CGGCCG | 2 cut(s) | 57, 495 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1433 |
| BsuI | GTATCC | 1 cut(s) | 860 |
| BsuRI | GGCC | 8 cut(s) | 59, 98, 113, 168, 182, 209, 497, 695 |
| BtrI | CACGTC | 1 cut(s) | 246 |
| BtsCI | GGATG | 5 cut(s) | 549, 631, 839, 916, 1454 |
| BtsI | GCAGTG | 1 cut(s) | 99 |
| BtsIMutI | CAGTG | 5 cut(s) | 99, 562, 677, 786, 1156 |
| BtuMI | TCGCGA | 1 cut(s) | 156 |
| BveI | ACCTGC | 1 cut(s) | 1217 |
| Cac8I | GCNNGC | 8 cut(s) | 38, 42, 57, 897, 1150, 1154, 1224, 1291 |
| CaiI | CAGNNNCTG | 1 cut(s) | 205 |
| CfoI | GCGC | 2 cut(s) | 103, 151 |
| Cfr10I | RCCGGY | 4 cut(s) | 40, 55, 272, 329 |
| Cfr13I | GGNCC | 2 cut(s) | 196, 1055 |
| CseI | GACGC | 3 cut(s) | 86, 146, 480 |
| Csp6I | GTAC | 3 cut(s) | 828, 936, 1253 |
| CviAII | CATG | 8 cut(s) | 301, 922, 1130, 1223, 1333, 1352, 1460, 1524 |
| CviQI | GTAC | 3 cut(s) | 828, 936, 1253 |
| DdeI | CTNAG | 5 cut(s) | 127, 554, 633, 1239, 1433 |
| DpnI | GATC | 3 cut(s) | 48, 379, 1213 |
| DpnII | GATC | 3 cut(s) | 46, 377, 1211 |
| DraI | TTTAAA | 1 cut(s) | 1306 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 400 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 400 |
| EaeI | YGGCCR | 4 cut(s) | 57, 96, 207, 495 |
| EagI | CGGCCG | 2 cut(s) | 57, 495 |
| Eam1104I | CTCTTC | 5 cut(s) | 26, 124, 473, 582, 1527 |
| EarI | CTCTTC | 5 cut(s) | 26, 124, 473, 582, 1527 |
| Ecl136II | GAGCTC | 3 cut(s) | 36, 297, 637 |
| EclXI | CGGCCG | 2 cut(s) | 57, 495 |
| Eco130I | CCWWGG | 1 cut(s) | 696 |
| Eco147I | AGGCCT | 2 cut(s) | 113, 695 |
| Eco24I | GRGCYC | 5 cut(s) | 38, 299, 392, 639, 929 |
| Eco31I | GGTCTC | 1 cut(s) | 130 |
| Eco47I | GGWCC | 2 cut(s) | 196, 1055 |
| Eco52I | CGGCCG | 2 cut(s) | 57, 495 |
| Eco53kI | GAGCTC | 3 cut(s) | 36, 297, 637 |
| Eco57I | CTGAAG | 2 cut(s) | 1080, 1551 |
| Eco81I | CCTNAGG | 1 cut(s) | 1433 |
| EcoICRI | GAGCTC | 3 cut(s) | 36, 297, 637 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1055 |
| EcoT14I | CCWWGG | 1 cut(s) | 696 |
| EcoT22I | ATGCAT | 1 cut(s) | 1135 |
| EcoT38I | GRGCYC | 5 cut(s) | 38, 299, 392, 639, 929 |
| ErhI | CCWWGG | 1 cut(s) | 696 |
| FaeI | CATG | 8 cut(s) | 304, 925, 1133, 1226, 1336, 1355, 1463, 1527 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1286, 1318 |
| FaqI | GGGAC | 1 cut(s) | 1068 |
| FatI | CATG | 8 cut(s) | 300, 921, 1129, 1222, 1332, 1351, 1459, 1523 |
| FauNDI | CATATG | 1 cut(s) | 1411 |
| FblI | GTMKAC | 1 cut(s) | 132 |
| Fnu4HI | GCNGC | 9 cut(s) | 60, 99, 183, 253, 310, 367, 579, 1191, 1358 |
| FokI | GGATG | 5 cut(s) | 556, 638, 826, 903, 1461 |
| FriOI | GRGCYC | 5 cut(s) | 38, 299, 392, 639, 929 |
| Fsp4HI | GCNGC | 9 cut(s) | 60, 99, 183, 253, 310, 367, 579, 1191, 1358 |
| FspBI | CTAG | 4 cut(s) | 900, 1311, 1466, 1562 |
| GlaI | GCGC | 2 cut(s) | 102, 150 |
| GluI | GCNGC | 9 cut(s) | 60, 99, 183, 253, 310, 367, 579, 1191, 1358 |
| GsaI | CCCAGC | 1 cut(s) | 585 |
| HaeII | RGCGCY | 1 cut(s) | 152 |
| HaeIII | GGCC | 8 cut(s) | 59, 98, 113, 168, 182, 209, 497, 695 |
| HgaI | GACGC | 3 cut(s) | 86, 146, 480 |
| HhaI | GCGC | 2 cut(s) | 103, 151 |
| Hin1I | GRCGYC | 2 cut(s) | 78, 138 |
| Hin1II | CATG | 8 cut(s) | 304, 925, 1133, 1226, 1336, 1355, 1463, 1527 |
| Hin6I | GCGC | 2 cut(s) | 101, 149 |
| HinP1I | GCGC | 2 cut(s) | 101, 149 |
| HincII | GTYRAC | 1 cut(s) | 133 |
| HindII | GTYRAC | 1 cut(s) | 133 |
| HindIII | AAGCTT | 1 cut(s) | 1379 |
| HinfI | GANTC | 8 cut(s) | 425, 629, 800, 946, 968, 991, 1537, 1592 |
| HphI | GGTGA | 1 cut(s) | 866 |
| Hpy166II | GTNNAC | 5 cut(s) | 133, 234, 291, 348, 1568 |
| Hpy188III | TCNNGA | 7 cut(s) | 155, 235, 292, 349, 375, 864, 995 |
| Hpy8I | GTNNAC | 5 cut(s) | 133, 234, 291, 348, 1568 |
| Hpy99I | CGWCG | 7 cut(s) | 80, 137, 140, 215, 250, 284, 496 |
| HpyAV | CCTTC | 7 cut(s) | 18, 82, 124, 1180, 1267, 1406, 1508 |
| HpyCH4III | ACNGT | 3 cut(s) | 505, 603, 795 |
| HpyCH4IV | ACGT | 2 cut(s) | 245, 1362 |
| HpyCH4V | TGCA | 7 cut(s) | 1045, 1088, 1133, 1148, 1226, 1351, 1415 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 98, 146, 1080, 1196, 1274, 1357 |
| HpyF3I | CTNAG | 5 cut(s) | 127, 554, 633, 1239, 1433 |
| HpySE526I | ACGT | 2 cut(s) | 245, 1362 |
| Hsp92I | GRCGYC | 2 cut(s) | 78, 138 |
| Hsp92II | CATG | 8 cut(s) | 304, 925, 1133, 1226, 1336, 1355, 1463, 1527 |
| HspAI | GCGC | 2 cut(s) | 101, 149 |
| Kpn2I | TCCGGA | 1 cut(s) | 374 |
| KroI | GCCGGC | 2 cut(s) | 40, 55 |
| KroNI | GCCGGC | 2 cut(s) | 42, 57 |
| Kzo9I | GATC | 3 cut(s) | 46, 377, 1211 |
| LguI | GCTCTTC | 1 cut(s) | 26 |
| LmnI | GCTCC | 5 cut(s) | 67, 281, 302, 338, 1219 |
| Lsp1109I | GCAGC | 3 cut(s) | 565, 1177, 1369 |
| LweI | GCATC | 1 cut(s) | 827 |
| MaeI | CTAG | 4 cut(s) | 900, 1311, 1466, 1562 |
| MaeII | ACGT | 2 cut(s) | 245, 1362 |
| MaeIII | GTNAC | 2 cut(s) | 1141, 1455 |
| MalI | GATC | 3 cut(s) | 48, 379, 1213 |
| MbiI | CCGCTC | 3 cut(s) | 62, 252, 309 |
| MboI | GATC | 3 cut(s) | 46, 377, 1211 |
| MboII | GAAGA | 9 cut(s) | 16, 40, 43, 111, 490, 599, 711, 1036, 1544 |
| MfeI | CAATTG | 1 cut(s) | 1341 |
| MflI | RGATCY | 2 cut(s) | 46, 377 |
| MhlI | GDGCHC | 5 cut(s) | 38, 299, 392, 639, 929 |
| MluCI | AATT | 5 cut(s) | 442, 880, 1018, 1341, 1427 |
| MlyI | GAGTC | 4 cut(s) | 434, 623, 794, 985 |
| MmeI | TCCRAC | 3 cut(s) | 303, 360, 945 |
| Mph1103I | ATGCAT | 1 cut(s) | 1135 |
| MroI | TCCGGA | 1 cut(s) | 374 |
| MroNI | GCCGGC | 2 cut(s) | 40, 55 |
| MroXI | GAANNNNTTC | 2 cut(s) | 505, 603 |
| MseI | TTAA | 4 cut(s) | 978, 1166, 1305, 1365 |
| MspA1I | CMGCKG | 1 cut(s) | 366 |
| MspR9I | CCNGG | 2 cut(s) | 400, 741 |
| MunI | CAATTG | 1 cut(s) | 1341 |
| MvnI | CGCG | 2 cut(s) | 101, 156 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 98, 146, 1080, 1196, 1274, 1357 |
| NaeI | GCCGGC | 2 cut(s) | 42, 57 |
| NciI | CCSGG | 2 cut(s) | 400, 741 |
| NdeI | CATATG | 1 cut(s) | 1411 |
| NdeII | GATC | 3 cut(s) | 46, 377, 1211 |
| NgoMIV | GCCGGC | 2 cut(s) | 40, 55 |
| NlaIII | CATG | 8 cut(s) | 304, 925, 1133, 1226, 1336, 1355, 1463, 1527 |
| NlaIV | GGNNCC | 3 cut(s) | 277, 334, 1056 |
| NmeAIII | GCCGAG | 2 cut(s) | 106, 211 |
| NmuCI | GTSAC | 2 cut(s) | 1141, 1455 |
| NruI | TCGCGA | 1 cut(s) | 156 |
| NsiI | ATGCAT | 1 cut(s) | 1135 |
| NspI | RCATGY | 1 cut(s) | 1226 |
| NspV | TTCGAA | 1 cut(s) | 509 |
| PaeI | GCATGC | 1 cut(s) | 1226 |
| PceI | AGGCCT | 2 cut(s) | 113, 695 |
| PciSI | GCTCTTC | 1 cut(s) | 26 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 138, 242, 356, 545 |
| PdiI | GCCGGC | 2 cut(s) | 42, 57 |
| PdmI | GAANNNNTTC | 2 cut(s) | 505, 603 |
| PfeI | GAWTC | 4 cut(s) | 946, 968, 1537, 1592 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 205 |
| PkrI | GCNGC | 9 cut(s) | 61, 100, 184, 254, 311, 368, 580, 1192, 1359 |
| PleI | GAGTC | 4 cut(s) | 433, 623, 794, 985 |
| PpsI | GAGTC | 4 cut(s) | 433, 623, 794, 985 |
| PpuMI | RGGWCCY | 1 cut(s) | 1055 |
| PsiI | TTATAA | 1 cut(s) | 765 |
| Psp124BI | GAGCTC | 3 cut(s) | 38, 299, 639 |
| Psp5II | RGGWCCY | 1 cut(s) | 1055 |
| PspFI | CCCAGC | 1 cut(s) | 581 |
| PspN4I | GGNNCC | 3 cut(s) | 277, 334, 1056 |
| PspPI | GGNCC | 2 cut(s) | 196, 1055 |
| PspPPI | RGGWCCY | 1 cut(s) | 1055 |
| PstI | CTGCAG | 1 cut(s) | 1090 |
| PstNI | CAGNNNCTG | 1 cut(s) | 205 |
| PsuI | RGATCY | 2 cut(s) | 46, 377 |
| RruI | TCGCGA | 1 cut(s) | 156 |
| RsaI | GTAC | 3 cut(s) | 829, 937, 1254 |
| RsaNI | GTAC | 3 cut(s) | 828, 936, 1253 |
| SacI | GAGCTC | 3 cut(s) | 38, 299, 639 |
| SalI | GTCGAC | 1 cut(s) | 131 |
| SapI | GCTCTTC | 1 cut(s) | 26 |
| SaqAI | TTAA | 4 cut(s) | 978, 1166, 1305, 1365 |
| SatI | GCNGC | 9 cut(s) | 60, 99, 183, 253, 310, 367, 579, 1191, 1358 |
| Sau3AI | GATC | 3 cut(s) | 46, 377, 1211 |
| Sau96I | GGNCC | 2 cut(s) | 196, 1055 |
| SchI | GAGTC | 4 cut(s) | 434, 623, 794, 985 |
| ScrFI | CCNGG | 2 cut(s) | 400, 741 |
| SduI | GDGCHC | 5 cut(s) | 38, 299, 392, 639, 929 |
| SfaNI | GCATC | 1 cut(s) | 827 |
| SfcI | CTRYAG | 3 cut(s) | 757, 1086, 1194 |
| SfuI | TTCGAA | 1 cut(s) | 509 |
| SinI | GGWCC | 2 cut(s) | 196, 1055 |
| SmlI | CTYRAG | 1 cut(s) | 710 |
| SmoI | CTYRAG | 1 cut(s) | 710 |
| SphI | GCATGC | 1 cut(s) | 1226 |
| Sse9I | AATT | 5 cut(s) | 442, 880, 1018, 1341, 1427 |
| SseBI | AGGCCT | 2 cut(s) | 113, 695 |
| SsiI | CCGC | 7 cut(s) | 60, 99, 183, 252, 309, 366, 887 |
| SspMI | CTAG | 4 cut(s) | 900, 1311, 1466, 1562 |
| SstI | GAGCTC | 3 cut(s) | 38, 299, 639 |
| StuI | AGGCCT | 2 cut(s) | 113, 695 |
| StyD4I | CCNGG | 2 cut(s) | 398, 739 |
| StyI | CCWWGG | 1 cut(s) | 696 |
| TaaI | ACNGT | 3 cut(s) | 505, 603, 795 |
| TaiI | ACGT | 2 cut(s) | 248, 1365 |
| TaqI | TCGA | 8 cut(s) | 132, 248, 267, 305, 392, 509, 539, 944 |
| TaqII | GACCGA | 2 cut(s) | 112, 1480 |
| TasI | AATT | 5 cut(s) | 442, 880, 1018, 1341, 1427 |
| TatI | WGTACW | 1 cut(s) | 827 |
| TauI | GCSGC | 6 cut(s) | 62, 101, 185, 255, 312, 369 |
| TfiI | GAWTC | 4 cut(s) | 946, 968, 1537, 1592 |
| Tru1I | TTAA | 4 cut(s) | 978, 1166, 1305, 1365 |
| Tru9I | TTAA | 4 cut(s) | 978, 1166, 1305, 1365 |
| TscAI | CASTG | 5 cut(s) | 99, 562, 677, 793, 1163 |
| TseFI | GTSAC | 2 cut(s) | 1141, 1455 |
| TseI | GCWGC | 3 cut(s) | 578, 1190, 1357 |
| Tsp45I | GTSAC | 2 cut(s) | 1141, 1455 |
| TspDTI | ATGAA | 8 cut(s) | 17, 828, 1017, 1031, 1137, 1184, 1296, 1391 |
| TspGWI | ACGGA | 3 cut(s) | 122, 333, 1589 |
| TspRI | CASTG | 5 cut(s) | 99, 562, 677, 793, 1163 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 2 cut(s) | 196, 1055 |
| XapI | RAATTY | 1 cut(s) | 442 |
| XceI | RCATGY | 1 cut(s) | 1226 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1400 |
| XmiI | GTMKAC | 1 cut(s) | 132 |
| XmnI | GAANNNNTTC | 2 cut(s) | 505, 603 |
| XspI | CTAG | 4 cut(s) | 900, 1311, 1466, 1562 |
| Zsp2I | ATGCAT | 1 cut(s) | 1135 |