Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Forward (+)

18790783 .. 18791685

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACGTCCAGGTTTGATGTTGCTGCTACTAGAGAAGAGGAGGAGGCCGAACAGTTTCTTTGGTCTATGCTCGGAGACGAGTCGGAGTTAAACTTGAGTGTTATTAGGGATGTCCTTTCTCAGTGTGGGTATGAAGTTGAAAAGGCCTTGGATGCCCTACTTGAGTTATCTTCTTCCTCAAGTGAGACATGGTATTGTGTGGGAGATACTCACCAGAGTTATAAAGAGGTTCTTGCTGGTACTACTTCCAAAGCTCACCGGAGTACGAACTCAGATAACCTCTCTCAGGTGGTGTTGGAATCTTTGTTCAACAAATCTAAGAGGAGGAGTCCAGAAAATGAAGAACCAAGAACCATGAATTCTTGGAAGAATAGTATGAAGGAATTGCAAGAAGCTGAATATGATGCATATAGAGGGACTGCAAAGCAGCACTGGGATTCAGTAACGTCCCACTATCAGAAAGCTGCAACTGCATATTCAAACGGATCGCGGGCATACGCAGGTTACCTCTCTGAGCAGGCGAAGGTAAAGGCAAAATTGGCACGAGAGGCGGATGAGAAGGCAAGCCAGGAGATCTTCAAAGCTAGAAACAAGGATAAGTGGATAAACAATGGTGTGATAACCATTGATTTGCATGGCCAGCATGTCAAACAAGCAATGAAGCTTTTGAAAATCCACCTTCTGAAAGGAACCAATGCGCAGTCGCTTCGGCACCTCAGGGTTATCACCGGCTGTGGTGCAGGAAAGTCTATTCTGAAACAATCAGTCATCAGACTCATCCAGAACGAAGGTATTAAATGGAGCGAAGAGAATCCGGGAGCGGTATTAATCAAGCTAGCTTCACAGAGACAACTTCAGGTTCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

289

Amino Acids

32.49

Weight (kDa)

8.28

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1771	PF08590	134 - 197	6.4e-16	Domain of unknown function (DUF1771)
Smr	PF01713	209 - 263	5.6e-06	Smr domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AatII	GACGTC	1 cut(s)	8
Acc16I	TGCGCA	1 cut(s)	699
Acc36I	ACCTGC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	711
AccBSI	CCGCTC	1 cut(s)	821
AccII	CGCG	1 cut(s)	490
AciI	CCGC	3 cut(s)	490, 551, 821
AclWI	GGATC	1 cut(s)	493
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	839
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	241, 265
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	140, 310, 480, 580, 670
AjnI	CCWGG	2 cut(s)	8, 567
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
AluBI	AGCT	7 cut(s)	254, 395, 464, 584, 664, 835, 839
AluI	AGCT	7 cut(s)	254, 395, 464, 584, 664, 835, 839
Alw26I	GTCTC	3 cut(s)	69, 179, 841
AlwI	GGATC	1 cut(s)	493
AoxI	GGCC	3 cut(s)	45, 144, 637
ApeKI	GCWGC	3 cut(s)	23, 427, 464
ApoI	RAATTY	1 cut(s)	358
AseI	ATTAAT	1 cut(s)	827
Asp700I	GAANNNNTTC	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	700
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	3 cut(s)	203, 248, 718
AsuNHI	GCTAGC	1 cut(s)	835
AxyI	CCTNAGG	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	711
BauI	CACGAG	1 cut(s)	543
BbvI	GCAGC	3 cut(s)	10, 439, 451
BcgI	CGANNNNNNTGC	2 cut(s)	689, 723
BciT130I	CCWGG	2 cut(s)	10, 569
BcnI	CCSGG	1 cut(s)	816
BcoDI	GTCTC	3 cut(s)	69, 179, 841
BfaI	CTAG	3 cut(s)	30, 585, 836
BfuAI	ACCTGC	1 cut(s)	491
BglII	AGATCT	1 cut(s)	573
BisI	GCNGC	3 cut(s)	24, 428, 465
BlsI	GCNGC	3 cut(s)	25, 429, 466
Bme1390I	CCNGG	3 cut(s)	10, 569, 816
BmiI	GGNNCC	2 cut(s)	691, 713
BmrFI	CCNGG	3 cut(s)	10, 569, 816
BmrI	ACTGGG	1 cut(s)	442
BmsI	GCATC	2 cut(s)	142, 394
BmtI	GCTAGC	1 cut(s)	839
BmuI	ACTGGG	1 cut(s)	442
BpuEI	CTTGAG	3 cut(s)	115, 163, 182
BpuMI	CCSGG	1 cut(s)	816
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	728
Bse1I	ACTGG	1 cut(s)	437
Bse21I	CCTNAGG	1 cut(s)	716
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	2 cut(s)	10, 569
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	4 cut(s)	115, 157, 559, 777
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	5 cut(s)	134, 285, 299, 504, 730
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	4 cut(s)	53, 56, 337, 340
BseXI	GCAGC	3 cut(s)	10, 439, 451
BsgI	GTGCAG	1 cut(s)	759
Bsh1236I	CGCG	1 cut(s)	490
BshFI	GGCC	3 cut(s)	47, 146, 639
BshNI	GGYRCC	1 cut(s)	711
BsiSI	CCGG	3 cut(s)	259, 729, 815
BslFI	GGGAC	2 cut(s)	430, 433
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	69, 179, 841
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	430, 433
BsnI	GGCC	3 cut(s)	47, 146, 639
Bsp143I	GATC	2 cut(s)	485, 573
BspACI	CCGC	3 cut(s)	490, 551, 821
BspANI	GGCC	3 cut(s)	47, 146, 639
BspCNI	CTCAG	5 cut(s)	133, 284, 298, 505, 729
BspFNI	CGCG	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	691, 713
BspMI	ACCTGC	1 cut(s)	491
BspOI	GCTAGC	1 cut(s)	839
BspPI	GGATC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	711
BsrBI	CCGCTC	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	437
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	485, 573
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	10, 569
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	2 cut(s)	30, 801
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	5 cut(s)	492, 519, 565, 641, 837
BstDEI	CTNAG	6 cut(s)	120, 271, 285, 318, 513, 716
BstEII	GGTNACC	1 cut(s)	503
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	4 cut(s)	115, 157, 559, 777
BstFNI	CGCG	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	2 cut(s)	488, 576
BstMAI	GTCTC	3 cut(s)	69, 179, 841
BstMBI	GATC	2 cut(s)	485, 573
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 470, 539, 548, 640
BstNI	CCWGG	2 cut(s)	10, 569
BstNSI	RCATGY	1 cut(s)	647
BstPI	GGTNACC	1 cut(s)	503
BstSCI	CCNGG	3 cut(s)	8, 567, 814
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	10, 439, 451
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
Bsu36I	CCTNAGG	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	47, 146, 639
BtsCI	GGATG	4 cut(s)	115, 157, 559, 777
BtsIMutI	CAGTG	2 cut(s)	128, 430
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	5 cut(s)	492, 519, 565, 641, 837
CfoI	GCGC	1 cut(s)	700
Cfr10I	RCCGGY	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	240, 264
CviAII	CATG	5 cut(s)	189, 355, 635, 644, 863
CviQI	GTAC	2 cut(s)	240, 264
DdeI	CTNAG	6 cut(s)	120, 271, 285, 318, 513, 716
DpnI	GATC	2 cut(s)	487, 575
DpnII	GATC	2 cut(s)	485, 573
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	30, 801
EarI	CTCTTC	2 cut(s)	30, 801
EciI	GGCGGA	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	839
Eco81I	CCTNAGG	1 cut(s)	716
Eco91I	GGTNACC	1 cut(s)	503
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	503
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	8, 567
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	147
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	5 cut(s)	192, 358, 638, 647, 866
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	2 cut(s)	430, 433
FatI	CATG	5 cut(s)	188, 354, 634, 643, 862
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	24, 428, 465
FokI	GGATG	4 cut(s)	122, 164, 566, 764
Fsp4HI	GCNGC	3 cut(s)	24, 428, 465
FspBI	CTAG	3 cut(s)	30, 585, 836
FspI	TGCGCA	1 cut(s)	699
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	3 cut(s)	24, 428, 465
HaeIII	GGCC	3 cut(s)	47, 146, 639
HapII	CCGG	3 cut(s)	259, 729, 815
HhaI	GCGC	1 cut(s)	700
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	192, 358, 638, 647, 866
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	6 cut(s)	80, 299, 328, 437, 774, 811
HpaII	CCGG	3 cut(s)	259, 729, 815
HphI	GGTGA	3 cut(s)	203, 248, 718
Hpy188I	TCNGA	8 cut(s)	74, 85, 274, 459, 514, 684, 756, 773
Hpy188III	TCNNGA	2 cut(s)	332, 781
HpyAV	CCTTC	5 cut(s)	373, 517, 553, 689, 782
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	2 cut(s)	5, 446
HpyCH4V	TGCA	7 cut(s)	388, 407, 422, 467, 473, 634, 740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 470, 539, 548, 640
HpyF3I	CTNAG	6 cut(s)	120, 271, 285, 318, 513, 716
HpySE526I	ACGT	2 cut(s)	5, 446
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	192, 358, 638, 647, 866
HspAI	GCGC	1 cut(s)	698
Kzo9I	GATC	2 cut(s)	485, 573
LmnI	GCTCC	2 cut(s)	801, 818
Lsp1109I	GCAGC	3 cut(s)	10, 439, 451
LweI	GCATC	2 cut(s)	142, 394
MaeI	CTAG	3 cut(s)	30, 585, 836
MaeII	ACGT	2 cut(s)	5, 446
MaeIII	GTNAC	2 cut(s)	442, 503
MalI	GATC	2 cut(s)	487, 575
MbiI	CCGCTC	1 cut(s)	821
MboI	GATC	2 cut(s)	485, 573
MboII	GAAGA	7 cut(s)	47, 162, 165, 353, 379, 568, 818
MflI	RGATCY	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	3 cut(s)	358, 383, 536
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	3 cut(s)	89, 337, 768
MmeI	TCCRAC	2 cut(s)	63, 276
Mox20I	TGGCCA	1 cut(s)	639
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	3 cut(s)	89, 795, 827
Msp20I	TGGCCA	1 cut(s)	639
MspI	CCGG	3 cut(s)	259, 729, 815
MspR9I	CCNGG	3 cut(s)	10, 569, 816
MvaI	CCWGG	2 cut(s)	10, 569
MvnI	CGCG	1 cut(s)	490
MwoI	GCNNNNNNNGC	5 cut(s)	152, 470, 539, 548, 640
NciI	CCSGG	1 cut(s)	816
NdeII	GATC	2 cut(s)	485, 573
NheI	GCTAGC	1 cut(s)	835
NlaIII	CATG	5 cut(s)	192, 358, 638, 647, 866
NlaIV	GGNNCC	2 cut(s)	691, 713
NsbI	TGCGCA	1 cut(s)	699
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	647
PceI	AGGCCT	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	299, 437, 811
PfoI	TCCNGGA	1 cut(s)	814
PkrI	GCNGC	3 cut(s)	25, 429, 466
PleI	GAGTC	3 cut(s)	88, 336, 768
PpsI	GAGTC	3 cut(s)	88, 336, 768
PshBI	ATTAAT	1 cut(s)	827
PsiI	TTATAA	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	8, 567
PspEI	GGTNACC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	8, 567
PspN4I	GGNNCC	2 cut(s)	691, 713
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	2 cut(s)	241, 265
RsaNI	GTAC	2 cut(s)	240, 264
SaqAI	TTAA	3 cut(s)	89, 795, 827
SatI	GCNGC	3 cut(s)	24, 428, 465
Sau3AI	GATC	2 cut(s)	485, 573
SchI	GAGTC	3 cut(s)	89, 337, 768
ScrFI	CCNGG	3 cut(s)	10, 569, 816
SfaNI	GCATC	2 cut(s)	142, 394
SmlI	CTYRAG	3 cut(s)	94, 161, 178
SmoI	CTYRAG	3 cut(s)	94, 161, 178
Sse9I	AATT	3 cut(s)	358, 383, 536
SseBI	AGGCCT	1 cut(s)	146
SsiI	CCGC	3 cut(s)	490, 551, 821
SspMI	CTAG	3 cut(s)	30, 585, 836
StuI	AGGCCT	1 cut(s)	146
StyD4I	CCNGG	3 cut(s)	8, 567, 814
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	2 cut(s)	8, 449
TasI	AATT	3 cut(s)	358, 383, 536
TfiI	GAWTC	3 cut(s)	299, 437, 811
Tru1I	TTAA	3 cut(s)	89, 795, 827
Tru9I	TTAA	3 cut(s)	89, 795, 827
TscAI	CASTG	2 cut(s)	128, 437
TseI	GCWGC	3 cut(s)	23, 427, 464
TspDTI	ATGAA	6 cut(s)	147, 354, 371, 392, 674, 851
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	2 cut(s)	128, 437
VspI	ATTAAT	1 cut(s)	827
XagI	CCTNNNNNAGG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	647
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	3 cut(s)	30, 585, 836
ZraI	GACGTC	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.