Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Forward (+)

20269438 .. 20282189

Gene Structure 12752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG211000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGACGTCCAAGACTCGGCAGGGATCTCTTGCTGCTACAACCAAAGAGGATGCCGAGCAGTTTCTTTGCTCCATGTTTGGAGACGAGTCGGAGATAAGCTTGGGTGTGGTTAAAGATGTCCTTGGTCAGTGTGGGTGTGAGGTTGAAAAGGCGTTGGATGCCTTGCTCGAGTTATCTTCTTCCTCAAGAAAGAGACGGTGCTCTTCAGAATATATCCGCAAGAACTATGCCGAGGTTCTTGTTGGTCCTTCTCAAGCACATAGGAGTACGAGTGCAAATCTGTCTCAGATGGTGGAATCTTTGTTTAACAACTCCAAGAGAAGTCTTCAGAATGAAGAACCAAGAACTATGAATTCTTGGAAGAACAGTGTCAAGGAATTGCAAGATTCTTTGGGACCCGAGTTTGATGTTGCTAAAGGAGCTGAATATGACGCATATAGAAGTACTGCAAAGGAGCATTGGGATTCAGTGAAGTCCTACCATCAAAAAGCTGCGACTGCGTATTCAAACGGATCACGGGCATATGCAGGTTACCTATCCGAGCAGGCCAAGGCAAAGGCGAAATTGGCACGAGAGGTGGACGAGAAGGCAAGCCAGGAGATCTTTAAAGCTAAAAACAAGGACAAGGGAATAAAAAATGATGTGATGACAATTGATTTGCATGGGCAGCATGTGAACGAAGCGATGAAGTTTTTGAAGATGCACATTCAGTATGGAACCAATACACAATCGCTTCGATTCCTCAGGGTTATTACAGGACATGGTGCAGGGAAGTCTATTGTGAAACACTCTGTCATCAAATTTTTCCAGAAAGAAGGTATTAAATGGAGTGAAGAGAATCCAGGAGCGTTGTTAATCAAGCTAGGTTCACAGAGAGACTACTTCAGATTTATGGACAGGGATGAGGCGGGGTCTAAAAAACTGACGAAAGCACTGAATCCGGAACACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

317

Amino Acids

35.54

Weight (kDa)

9.01

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1771	PF08590	143 - 206	4.4e-15	Domain of unknown function (DUF1771)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	518
AccIII	TCCGGA	1 cut(s)	940
AciI	CCGC	2 cut(s)	217, 908
AclWI	GGATC	2 cut(s)	31, 520
AcsI	RAATTY	2 cut(s)	352, 800
AcuI	CTGAAG	3 cut(s)	189, 311, 868
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	268, 445
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	146, 507, 697
AjnI	CCWGG	2 cut(s)	594, 841
AluBI	AGCT	5 cut(s)	99, 422, 491, 611, 862
AluI	AGCT	5 cut(s)	99, 422, 491, 611, 862
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	4 cut(s)	75, 187, 288, 870
AlwI	GGATC	2 cut(s)	31, 520
Ama87I	CYCGRG	2 cut(s)	167, 398
Aor13HI	TCCGGA	1 cut(s)	940
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	3 cut(s)	32, 491, 667
ApoI	RAATTY	2 cut(s)	352, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AspS9I	GGNCC	2 cut(s)	245, 395
AvaI	CYCGRG	2 cut(s)	167, 398
AvaII	GGWCC	2 cut(s)	245, 395
AxyI	CCTNAGG	1 cut(s)	743
BauI	CACGAG	2 cut(s)	570, 947
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	19, 478, 679
BccI	CCATC	2 cut(s)	283, 489
BciT130I	CCWGG	2 cut(s)	596, 843
BcoDI	GTCTC	4 cut(s)	75, 187, 288, 870
BfaI	CTAG	1 cut(s)	863
BfuAI	ACCTGC	1 cut(s)	518
BglII	AGATCT	1 cut(s)	600
BisI	GCNGC	3 cut(s)	33, 492, 668
BlsI	GCNGC	3 cut(s)	34, 493, 669
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	596, 843
Bme18I	GGWCC	2 cut(s)	245, 395
BmeT110I	CYCGRG	2 cut(s)	167, 398
BmgT120I	GGNCC	2 cut(s)	245, 395
BmiI	GGNNCC	3 cut(s)	396, 397, 718
BmrFI	CCNGG	2 cut(s)	596, 843
BmsI	GCATC	3 cut(s)	40, 148, 690
BpiI	GAAGAC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	169, 237
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	121, 231, 549
BsaWI	WCCGGW	1 cut(s)	940
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse21I	CCTNAGG	1 cut(s)	743
BseAI	TCCGGA	1 cut(s)	940
BseBI	CCWGG	2 cut(s)	596, 843
BseDI	CCNNGG	3 cut(s)	121, 231, 549
BseGI	GGATG	3 cut(s)	55, 163, 907
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	299, 757
BseXI	GCAGC	3 cut(s)	19, 478, 679
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	1 cut(s)	548
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	2 cut(s)	167, 398
BsiSI	CCGG	1 cut(s)	941
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	4 cut(s)	75, 187, 288, 870
BsmBI	CGTCTC	2 cut(s)	75, 187
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	548
BsoBI	CYCGRG	2 cut(s)	167, 398
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp13I	TCCGGA	1 cut(s)	940
Bsp143I	GATC	3 cut(s)	23, 512, 600
BspACI	CCGC	2 cut(s)	217, 908
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	2 cut(s)	298, 756
BspEI	TCCGGA	1 cut(s)	940
BspLI	GGNNCC	3 cut(s)	396, 397, 718
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	2 cut(s)	31, 520
BspQI	GCTCTTC	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	121, 231, 549
BssMI	GATC	3 cut(s)	23, 512, 600
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	2 cut(s)	570, 947
BssT1I	CCWWGG	2 cut(s)	121, 549
Bst2BI	CACGAG	2 cut(s)	570, 947
Bst2UI	CCWGG	2 cut(s)	596, 843
Bst4CI	ACNGT	2 cut(s)	198, 368
Bst6I	CTCTTC	2 cut(s)	208, 828
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	546, 592
BstDEI	CTNAG	2 cut(s)	285, 743
BstEII	GGTNACC	1 cut(s)	530
BstF5I	GGATG	3 cut(s)	55, 163, 907
BstKTI	GATC	3 cut(s)	26, 515, 603
BstMAI	GTCTC	4 cut(s)	75, 187, 288, 870
BstMBI	GATC	3 cut(s)	23, 512, 600
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 419, 497, 566, 667
BstNI	CCWGG	2 cut(s)	596, 843
BstNSI	RCATGY	1 cut(s)	674
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	594, 841
BstV1I	GCAGC	3 cut(s)	19, 478, 679
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	2 cut(s)	23, 600
BstYI	RGATCY	2 cut(s)	23, 600
Bsu36I	CCTNAGG	1 cut(s)	743
BsuRI	GGCC	1 cut(s)	548
BtgZI	GCGATG	1 cut(s)	698
BtsCI	GGATG	3 cut(s)	55, 163, 907
BtsIMutI	CAGTG	4 cut(s)	134, 373, 474, 932
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	2 cut(s)	546, 592
Cfr13I	GGNCC	2 cut(s)	245, 395
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	267, 444
CviAII	CATG	4 cut(s)	73, 662, 671, 761
CviJI	RGCY	7 cut(s)	99, 422, 491, 548, 594, 611, 862
CviKI_1	RGCY	7 cut(s)	99, 422, 491, 548, 594, 611, 862
CviQI	GTAC	2 cut(s)	267, 444
DdeI	CTNAG	2 cut(s)	285, 743
DpnI	GATC	3 cut(s)	25, 514, 602
DpnII	GATC	3 cut(s)	23, 512, 600
DraI	TTTAAA	1 cut(s)	607
Eam1104I	CTCTTC	2 cut(s)	208, 828
EarI	CTCTTC	2 cut(s)	208, 828
Eco130I	CCWWGG	2 cut(s)	121, 549
Eco47I	GGWCC	2 cut(s)	245, 395
Eco57I	CTGAAG	3 cut(s)	189, 311, 868
Eco81I	CCTNAGG	1 cut(s)	743
Eco88I	CYCGRG	2 cut(s)	167, 398
Eco91I	GGTNACC	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	395
EcoO65I	GGTNACC	1 cut(s)	530
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	594, 841
EcoT14I	CCWWGG	2 cut(s)	121, 549
ErhI	CCWWGG	2 cut(s)	121, 549
Esp3I	CGTCTC	2 cut(s)	75, 187
FaeI	CATG	4 cut(s)	76, 665, 674, 764
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	4 cut(s)	72, 661, 670, 760
FauI	CCCGC	1 cut(s)	901
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	33, 492, 668
FokI	GGATG	3 cut(s)	62, 170, 914
Fsp4HI	GCNGC	3 cut(s)	33, 492, 668
FspBI	CTAG	1 cut(s)	863
GluI	GCNGC	3 cut(s)	33, 492, 668
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	941
HgaI	GACGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	76, 665, 674, 764
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	8 cut(s)	13, 86, 296, 386, 464, 738, 838, 937
HpaII	CCGG	1 cut(s)	941
Hpy166II	GTNNAC	3 cut(s)	580, 676, 869
Hpy188I	TCNGA	6 cut(s)	91, 208, 288, 330, 541, 887
Hpy188III	TCNNGA	3 cut(s)	186, 808, 941
Hpy8I	GTNNAC	3 cut(s)	580, 676, 869
HpyAV	CCTTC	3 cut(s)	258, 580, 809
HpyCH4III	ACNGT	2 cut(s)	198, 368
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	7 cut(s)	275, 382, 449, 527, 661, 703, 767
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 419, 497, 566, 667
HpyF3I	CTNAG	2 cut(s)	285, 743
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	76, 665, 674, 764
KflI	GGGWCCC	1 cut(s)	395
Kpn2I	TCCGGA	1 cut(s)	940
Kzo9I	GATC	3 cut(s)	23, 512, 600
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	4 cut(s)	74, 419, 454, 845
Lsp1109I	GCAGC	3 cut(s)	19, 478, 679
LweI	GCATC	3 cut(s)	40, 148, 690
MaeI	CTAG	1 cut(s)	863
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	3 cut(s)	25, 514, 602
MboI	GATC	3 cut(s)	23, 512, 600
MboII	GAAGA	8 cut(s)	168, 171, 195, 317, 347, 373, 709, 845
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	2 cut(s)	23, 600
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	352, 377, 563, 651, 800
MlyI	GAGTC	2 cut(s)	7, 95
MmeI	TCCRAC	2 cut(s)	69, 135
MnlI	CCTC	7 cut(s)	40, 133, 193, 226, 568, 752, 898
MroI	TCCGGA	1 cut(s)	940
MseI	TTAA	5 cut(s)	111, 306, 606, 822, 854
MspI	CCGG	1 cut(s)	941
MspR9I	CCNGG	2 cut(s)	596, 843
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	2 cut(s)	596, 843
MwoI	GCNNNNNNNGC	5 cut(s)	158, 419, 497, 566, 667
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	3 cut(s)	23, 512, 600
NlaIII	CATG	4 cut(s)	76, 665, 674, 764
NlaIV	GGNNCC	3 cut(s)	396, 397, 718
NmeAIII	GCCGAG	2 cut(s)	79, 256
NspI	RCATGY	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	208
PfeI	GAWTC	6 cut(s)	296, 386, 464, 738, 838, 937
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	3 cut(s)	34, 493, 669
PleI	GAGTC	2 cut(s)	7, 94
PpsI	GAGTC	2 cut(s)	7, 94
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	594, 841
PspEI	GGTNACC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	594, 841
PspN4I	GGNNCC	3 cut(s)	396, 397, 718
PspPI	GGNCC	2 cut(s)	245, 395
PspPPI	RGGWCCY	1 cut(s)	395
PspXI	VCTCGAGB	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	23, 600
RsaI	GTAC	2 cut(s)	268, 445
RsaNI	GTAC	2 cut(s)	267, 444
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	5 cut(s)	111, 306, 606, 822, 854
SatI	GCNGC	3 cut(s)	33, 492, 668
Sau3AI	GATC	3 cut(s)	23, 512, 600
Sau96I	GGNCC	2 cut(s)	245, 395
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	2 cut(s)	7, 95
ScrFI	CCNGG	2 cut(s)	596, 843
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	3 cut(s)	40, 148, 690
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	245, 395
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	3 cut(s)	167, 184, 252
SmoI	CTYRAG	3 cut(s)	167, 184, 252
Sse9I	AATT	5 cut(s)	352, 377, 563, 651, 800
SsiI	CCGC	2 cut(s)	217, 908
SspMI	CTAG	1 cut(s)	863
StyD4I	CCNGG	2 cut(s)	594, 841
StyI	CCWWGG	2 cut(s)	121, 549
TaaI	ACNGT	2 cut(s)	198, 368
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	168, 736
TasI	AATT	5 cut(s)	352, 377, 563, 651, 800
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	6 cut(s)	296, 386, 464, 738, 838, 937
Tru1I	TTAA	5 cut(s)	111, 306, 606, 822, 854
Tru9I	TTAA	5 cut(s)	111, 306, 606, 822, 854
TscAI	CASTG	4 cut(s)	134, 373, 474, 939
TseI	GCWGC	3 cut(s)	32, 491, 667
TspDTI	ATGAA	3 cut(s)	348, 365, 701
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	4 cut(s)	134, 373, 474, 939
VpaK11BI	GGWCC	2 cut(s)	245, 395
XapI	RAATTY	2 cut(s)	352, 800
XceI	RCATGY	1 cut(s)	674
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	1 cut(s)	863
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.