Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001145

Physical Location & Seq

Genomic Coordinates Reverse (-)

29274875 .. 29277529

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAATGCCAAAAGTTTGAATGCTGGGCCTGCTGTGCAGATTTCTGGGACAATAAGACCAGCACGTCTACTTGGCCAAGCTCACCGAGCAGGCGGAGCGCTACGAGGAGATGGGTCCACCACGGCGTCGGAGCTCACCGTCGAGGAGCGCATCGAGCAGAAGGAGGAGGGCCGCAAGAACAAGAAACTGTTCTTATCGTTGACGATGAAGAAGCAGACGAGGAGGAGAAGGAAGAAGAGCTCGCCGGCAGATCCGAAGCTGGCCGCTCCCCCCAAAGACGACGCCGAGCAGAAGGCAGTGGCCGAGCTGACGGAGGCCTTCTCTTCGGTCTCAGTCGACGACGCCATTTCGGCGCTTCTTGAAGCCAAAGGCCACTCGGACAAGGCCGCCGAGATTTTGGTCCAGTCTCTGGACGACACCTCCGACGAGCCGCTCACGAGCTTCACGTGGAGAGGCGTTTCTGGTTTTGATACCGGCTCCGACGAGCCGTTCACGAGCTCTATGAATAAGCAAAAGAGGGTGGTTGCGTCGGCCGGAACGGTTTCGAATGTGTTGGGCAAAGAGAATGTGAGGTCGAGGATGACGAAGCTCAGTGGTTCAAAAAATGGAGATGCTGGTGGGGAAGAGGAAGTTGAACAGTTTCTTTGTTCAATGCTTGGAGATGACTCTGAGCTCAACTTGGCTGTTTTTAGAGATGTGCTTTGTAGTGGCCATTGTTTATATAGTAAAACGCATATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

248

Amino Acids

26.53

Weight (kDa)

6.92

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBA_At5g58720	PF24767	94 - 135	4.9e-14	At5g58720 UBA-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58720 AT5G58720 AT5G58720
fragaria_vesca	FvH4_3g38560 FvH4_3g38560 FvH4_3g38560 FvH4_5g18730 FvH4_5g18740 FvH4_5g18840
malus_domestica	MD03G1070600.v1.1 MD11G1074600.v1.1
prunus_persica	Prupe.6G057400_v2.0.a1
pyrus_communis	pycom03g05680 pycom11g06190
rosa_chinensis	RchiOBHm_Chr5g0069461 RchiOBHm_Chr7g0203081 RchiOBHm_Chr7g0203221
rosa_laevigata	RLG00000003238 RLG00000003543 RLG00000003554 RLG00000023860
rosa_multiflora	Rmu_co8333239.1_g000001 Rmu_co8345169.1_g000001 Rmu_sc0000994.1_g000002 Rmu_sc0002658.1_g000035 Rmu_sc0004999.1_g000008 Rmu_sc0006094.1_g000009 Rmu_sc0007385.1_g000002 Rmu_sc0010754.1_g000007 Rmu_sc0019422.1_g000006 Rmu_sc0022748.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011490 Rroxscaffold_3G00253960 Rroxscaffold_3G00253990 Rroxscaffold_3G00254090
rosa_rugosa	Rorug05G0397800 Rorug05G0397800 Rorug05G0397900 Rorug07G0074500 Rorug07G0075200
rosa_samantha	Rh5AG455100 Rh5BG474100 Rh5CG496500 Rh5DG485900 Rh7AG203200 Rh7AG204200 Rh7AG204500 Rh7BG202800 Rh7BG203700 Rh7CG213900 Rh7CG215200 Rh7CG215500 Rh7DG210000 Rh7DG211000
rosa_wichuraiana	Rw0G023020 Rw5G042450 Rw7G017730 Rw7G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	63
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccBSI	CCGCTC	2 cut(s)	266, 433
AccI	GTMKAC	2 cut(s)	67, 336
AciI	CCGC	5 cut(s)	93, 172, 264, 387, 431
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	5 cut(s)	73, 261, 300, 531, 709
AcvI	CACGTG	1 cut(s)	447
AcyI	GRCGYC	3 cut(s)	125, 282, 342
AfeI	AGCGCT	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	5 cut(s)	19, 362, 600, 635, 651
AjiI	CACGTC	1 cut(s)	65
AluBI	AGCT	9 cut(s)	80, 133, 240, 259, 307, 441, 498, 589, 673
AluI	AGCT	9 cut(s)	80, 133, 240, 259, 307, 441, 498, 589, 673
Alw21I	GWGCWC	4 cut(s)	135, 242, 500, 675
Alw26I	GTCTC	2 cut(s)	334, 411
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	409
Aor51HI	AGCGCT	1 cut(s)	99
Asp700I	GAANNNNTTC	3 cut(s)	188, 541, 639
AspLEI	GCGC	3 cut(s)	100, 150, 355
AspS9I	GGNCC	4 cut(s)	26, 114, 169, 400
AsuHPI	GGTGA	2 cut(s)	74, 127
AsuII	TTCGAA	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	114, 400
BalI	TGGCCA	2 cut(s)	75, 711
BanII	GRGCYC	4 cut(s)	135, 242, 500, 675
BauI	CACGAG	2 cut(s)	436, 493
BbrPI	CACGTG	1 cut(s)	447
Bbv12I	GWGCWC	4 cut(s)	135, 242, 500, 675
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	2 cut(s)	138, 472
BcoDI	GTCTC	2 cut(s)	334, 411
BfoI	RGCGCY	2 cut(s)	101, 356
BglI	GCCNNNNNGGC	1 cut(s)	350
BisI	GCNGC	4 cut(s)	172, 264, 387, 431
BlsI	GCNGC	4 cut(s)	173, 265, 388, 432
Bme18I	GGWCC	2 cut(s)	114, 400
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	4 cut(s)	26, 114, 169, 400
BmiI	GGNNCC	2 cut(s)	115, 478
BmsI	GCATC	2 cut(s)	159, 601
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu14I	TTCGAA	1 cut(s)	545
BsaAI	YACGTR	1 cut(s)	447
BsaHI	GRCGYC	3 cut(s)	125, 282, 342
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	2 cut(s)	244, 473
Bse1I	ACTGG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	3 cut(s)	345, 604, 660
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	5 cut(s)	120, 158, 179, 235, 238
BseX3I	CGGCCG	1 cut(s)	531
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	534
BsiEI	CGRYCG	1 cut(s)	534
BsiHKAI	GWGCWC	4 cut(s)	135, 242, 500, 675
BsiSI	CCGG	3 cut(s)	245, 474, 534
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	334, 411
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	2 cut(s)	10, 25
Bso31I	GGTCTC	1 cut(s)	334
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1286I	GDGCHC	4 cut(s)	135, 242, 500, 675
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	5 cut(s)	93, 172, 264, 387, 431
BspCNI	CTCAG	3 cut(s)	344, 603, 661
BspLI	GGNNCC	2 cut(s)	115, 478
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	334
BsrBI	CCGCTC	2 cut(s)	266, 433
BsrFI	RCCGGY	2 cut(s)	244, 473
BsrI	ACTGG	1 cut(s)	403
BssAI	RCCGGY	2 cut(s)	244, 473
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	250
BssNI	GRCGYC	3 cut(s)	125, 282, 342
BssSI	CACGAG	2 cut(s)	436, 493
Bst2BI	CACGAG	2 cut(s)	436, 493
Bst4CI	ACNGT	5 cut(s)	139, 189, 541, 639, 741
Bst6I	CTCTTC	3 cut(s)	230, 328, 618
BstACI	GRCGYC	3 cut(s)	125, 282, 342
BstBAI	YACGTR	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	5 cut(s)	30, 91, 242, 246, 261
BstDEI	CTNAG	3 cut(s)	331, 590, 669
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	585
BstH2I	RGCGCY	2 cut(s)	101, 356
BstHHI	GCGC	3 cut(s)	100, 150, 355
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	2 cut(s)	334, 411
BstMBI	GATC	1 cut(s)	250
BstMCI	CGRYCG	1 cut(s)	534
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 34, 86, 95, 154, 350
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BstZI	CGGCCG	1 cut(s)	531
BtgI	CCRYGG	1 cut(s)	120
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	303, 598
Cac8I	GCNNGC	5 cut(s)	30, 91, 242, 246, 261
CaiI	CAGNNNCTG	1 cut(s)	409
CfoI	GCGC	3 cut(s)	100, 150, 355
Cfr10I	RCCGGY	2 cut(s)	244, 473
Cfr13I	GGNCC	4 cut(s)	26, 114, 169, 400
CseI	GACGC	4 cut(s)	114, 290, 350, 516
DdeI	CTNAG	3 cut(s)	331, 590, 669
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	63
DseDI	GACNNNNNNGTC	1 cut(s)	63
EaeI	YGGCCR	5 cut(s)	73, 261, 300, 531, 709
EagI	CGGCCG	1 cut(s)	531
Eam1104I	CTCTTC	3 cut(s)	230, 328, 618
EarI	CTCTTC	3 cut(s)	230, 328, 618
EciI	GGCGGA	1 cut(s)	108
Ecl136II	GAGCTC	4 cut(s)	133, 240, 498, 673
EclXI	CGGCCG	1 cut(s)	531
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	4 cut(s)	135, 242, 500, 675
Eco31I	GGTCTC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	114, 400
Eco47III	AGCGCT	1 cut(s)	99
Eco52I	CGGCCG	1 cut(s)	531
Eco53kI	GAGCTC	4 cut(s)	133, 240, 498, 673
Eco72I	CACGTG	1 cut(s)	447
EcoICRI	GAGCTC	4 cut(s)	133, 240, 498, 673
EcoT38I	GRGCYC	4 cut(s)	135, 242, 500, 675
FaiI	YATR	5 cut(s)	503, 721, 723, 735, 737
FaqI	GGGAC	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	67, 336
Fnu4HI	GCNGC	4 cut(s)	172, 264, 387, 431
FokI	GGATG	1 cut(s)	592
FriOI	GRGCYC	4 cut(s)	135, 242, 500, 675
Fsp4HI	GCNGC	4 cut(s)	172, 264, 387, 431
GlaI	GCGC	3 cut(s)	99, 149, 354
GluI	GCNGC	4 cut(s)	172, 264, 387, 431
GsaI	CCCAGC	1 cut(s)	27
HaeII	RGCGCY	2 cut(s)	101, 356
HapII	CCGG	3 cut(s)	245, 474, 534
HgaI	GACGC	4 cut(s)	114, 290, 350, 516
HhaI	GCGC	3 cut(s)	100, 150, 355
Hin1I	GRCGYC	3 cut(s)	125, 282, 342
Hin6I	GCGC	3 cut(s)	98, 148, 353
HinP1I	GCGC	3 cut(s)	98, 148, 353
HincII	GTYRAC	2 cut(s)	201, 337
HindII	GTYRAC	2 cut(s)	201, 337
HinfI	GANTC	1 cut(s)	665
HpaII	CCGG	3 cut(s)	245, 474, 534
HphI	GGTGA	2 cut(s)	74, 127
Hpy166II	GTNNAC	5 cut(s)	68, 117, 201, 337, 492
Hpy188I	TCNGA	6 cut(s)	130, 255, 379, 424, 481, 670
Hpy188III	TCNNGA	4 cut(s)	359, 410, 436, 493
Hpy8I	GTNNAC	5 cut(s)	68, 117, 201, 337, 492
Hpy99I	CGWCG	8 cut(s)	130, 143, 284, 341, 344, 428, 485, 532
HpyAV	CCTTC	4 cut(s)	154, 222, 286, 328
HpyCH4III	ACNGT	5 cut(s)	139, 189, 541, 639, 741
HpyCH4IV	ACGT	2 cut(s)	64, 446
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 34, 86, 95, 154, 350
HpyF3I	CTNAG	3 cut(s)	331, 590, 669
HpySE526I	ACGT	2 cut(s)	64, 446
Hsp92I	GRCGYC	3 cut(s)	125, 282, 342
HspAI	GCGC	3 cut(s)	98, 148, 353
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	5 cut(s)	95, 130, 145, 271, 482
LweI	GCATC	2 cut(s)	159, 601
MaeII	ACGT	2 cut(s)	64, 446
MalI	GATC	1 cut(s)	252
MbiI	CCGCTC	2 cut(s)	266, 433
MboI	GATC	1 cut(s)	250
MboII	GAAGA	5 cut(s)	220, 244, 247, 315, 635
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	4 cut(s)	135, 242, 500, 675
MlsI	TGGCCA	2 cut(s)	75, 711
MluNI	TGGCCA	2 cut(s)	75, 711
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	3 cut(s)	108, 447, 504
Mox20I	TGGCCA	2 cut(s)	75, 711
MroNI	GCCGGC	1 cut(s)	244
MroXI	GAANNNNTTC	3 cut(s)	188, 541, 639
MscI	TGGCCA	2 cut(s)	75, 711
Msp20I	TGGCCA	2 cut(s)	75, 711
MspI	CCGG	3 cut(s)	245, 474, 534
Mva1269I	GAATGC	2 cut(s)	10, 25
MwoI	GCNNNNNNNGC	6 cut(s)	29, 34, 86, 95, 154, 350
NaeI	GCCGGC	1 cut(s)	246
NdeII	GATC	1 cut(s)	250
NgoMIV	GCCGGC	1 cut(s)	244
NlaIV	GGNNCC	2 cut(s)	115, 478
NmeAIII	GCCGAG	3 cut(s)	310, 328, 415
NspV	TTCGAA	1 cut(s)	545
PceI	AGGCCT	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	3 cut(s)	420, 443, 581
PctI	GAATGC	2 cut(s)	10, 25
PdiI	GCCGGC	1 cut(s)	246
PdmI	GAANNNNTTC	3 cut(s)	188, 541, 639
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	4 cut(s)	173, 265, 388, 432
PleI	GAGTC	1 cut(s)	659
PmaCI	CACGTG	1 cut(s)	447
PmlI	CACGTG	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	659
Ppu21I	YACGTR	1 cut(s)	447
Psp124BI	GAGCTC	4 cut(s)	135, 242, 500, 675
PspCI	CACGTG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	115, 478
PspPI	GGNCC	4 cut(s)	26, 114, 169, 400
PstNI	CAGNNNCTG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	250
SacI	GAGCTC	4 cut(s)	135, 242, 500, 675
SalI	GTCGAC	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	230
SatI	GCNGC	4 cut(s)	172, 264, 387, 431
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	4 cut(s)	26, 114, 169, 400
SchI	GAGTC	1 cut(s)	659
SduI	GDGCHC	4 cut(s)	135, 242, 500, 675
SfaNI	GCATC	2 cut(s)	159, 601
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	2 cut(s)	114, 400
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	5 cut(s)	93, 172, 264, 387, 431
SstI	GAGCTC	4 cut(s)	135, 242, 500, 675
StuI	AGGCCT	1 cut(s)	317
TaaI	ACNGT	5 cut(s)	139, 189, 541, 639, 741
TaiI	ACGT	2 cut(s)	67, 449
TaqI	TCGA	5 cut(s)	141, 153, 336, 545, 575
TaqII	GACCGA	1 cut(s)	316
TauI	GCSGC	4 cut(s)	174, 266, 389, 433
TscAI	CASTG	2 cut(s)	303, 598
TspDTI	ATGAA	3 cut(s)	17, 221, 518
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	303, 598
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	114, 400
XmiI	GTMKAC	2 cut(s)	67, 336
XmnI	GAANNNNTTC	3 cut(s)	188, 541, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.