Rh7CG215500

DUF1771

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001145
Physical Location & Seq
Forward (+)
19506716 .. 19517847
11132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG215500.1

Sequence Viewer

Length: 1044 bp
ATGACGTCCAAGACTCGGCAGGGATCTCTTGCTGCTACAACCAAAGAGGATGCCGAGCAGTTTCTTTGCTCCATGTTTGGAGACGAGTCGGAGATAAGCTTGGGTGTGGTTAAAGACGTCCTTGGTCAGTGTGGGTATGAGGTTGAAAAGGCGTTGGATGCCTTGCTCGAGTTATCTTCTTCCTCAAGAAAGAGACGGTGCTCTTCAGAATATATCCGCAAGAACTATGCCGAGGTTCTTGTTGGTCCTTCTCAAGCACATAGGAGTACGAGTGCAAATCTGTCTCAGATGGTGGAATCTTTGTTTAACAACTCCAAGAGAAGTCTTCAGAATGAAGAACCAAGAACTATGAATTCTTGGAAGAACAGTGTCAAGGAATCGCAAGATTCTTTGGGACCCGAGTTTGATGTTGCTAAAGGAGCTGAATATGACGCATATAGAAGTACTGCAAAGGAGCATTGGGATTCAGTGAAGTCCTACCATCAAAAAGCTGCGACTGCGTATTCAAACGGATCACGGGCATATGCAGGTTACCTATCCGAGCAGGCCAAGGCAAAGGCGAAATTGGCACGAGAGGTGGACGAGAAGGCAAGCCAGGAGATCTTTAAAGCTAAAAACAAGGACAAGGGAATAAAAAATGATGTGATGACAATTGATTTGCATGGGCAGCATGTGAACGAAGCGACGAAGTTTTTGAAGATGCACATTCAAGGAGGCGGTTTTGCTGATGTAGGGGGGATTGGAAATGACATCTTGATCGACCATTTTTGGTGGGATGTTCCTATTAAGGGTGAGGATGGATCTGCTCTTGATCCGTCAATCTATGGCGGCGGCCAAATTCCTCTTGTTGGTAGTGGTGGTGATCTGTGGCGGGGCTGTATGCAACAGTATGGCGAATCTAGGCGAGGCAACGACTTCGTCTTCTTCTCCATGTCTTCGCCGTCTTCTGATGGTCCTAGCGGTGCAGATCTCGCGATCGGTGCAGTTGGTTGGCTTTGGGTGTTGACGGCAGGTCATTTACCCGAACATGCCATTCTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1771 Smr

Protein Analysis

347

Amino Acids

37.96

Weight (kDa)

5.77

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1771 PF08590 143 - 206 5.1e-15 Domain of unknown function (DUF1771)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 8, 120
Acc36I ACCTGC 2 cut(s) 518, 1001
AccII CGCG 1 cut(s) 974
AciI CCGC 6 cut(s) 217, 717, 828, 831, 871, 960
AclWI GGATC 4 cut(s) 31, 520, 806, 808
AcoI YGGCCR 1 cut(s) 832
AcsI RAATTY 2 cut(s) 352, 837
AcuI CTGAAG 2 cut(s) 189, 311
AcyI GRCGYC 2 cut(s) 5, 117
AfaI GTAC 2 cut(s) 268, 445
AfiI CCNNNNNNNGG 3 cut(s) 15, 788, 848
AgsI TTSAA 4 cut(s) 146, 507, 697, 710
AhdI GACNNNNNGTC 1 cut(s) 1011
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 4 cut(s) 99, 422, 491, 611
AluI AGCT 4 cut(s) 99, 422, 491, 611
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 3 cut(s) 75, 187, 288
AlwI GGATC 4 cut(s) 31, 520, 806, 808
Ama87I CYCGRG 2 cut(s) 167, 398
AoxI GGCC 2 cut(s) 546, 832
ApeKI GCWGC 3 cut(s) 32, 491, 667
ApoI RAATTY 2 cut(s) 352, 837
ArsI GACNNNNNNTTYG 4 cut(s) 640, 672, 676, 708
AspS9I GGNCC 3 cut(s) 245, 395, 953
AsuHPI GGTGA 2 cut(s) 803, 872
AvaI CYCGRG 2 cut(s) 167, 398
AvaII GGWCC 3 cut(s) 245, 395, 953
BauI CACGAG 1 cut(s) 570
BbsI GAAGAC 4 cut(s) 317, 913, 927, 936
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 19, 478, 679
BccI CCATC 4 cut(s) 283, 489, 791, 944
BceAI ACGGC 2 cut(s) 925, 1023
BcgI CGANNNNNNTGC 2 cut(s) 898, 932
BciT130I CCWGG 1 cut(s) 596
BcoDI GTCTC 3 cut(s) 75, 187, 288
BfaI CTAG 2 cut(s) 900, 957
BfuAI ACCTGC 2 cut(s) 518, 1001
BglII AGATCT 2 cut(s) 600, 967
BisI GCNGC 5 cut(s) 33, 492, 668, 829, 832
BlsI GCNGC 5 cut(s) 34, 493, 669, 830, 833
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 3 cut(s) 245, 395, 953
BmeRI GACNNNNNGTC 1 cut(s) 1011
BmeT110I CYCGRG 2 cut(s) 167, 398
BmgT120I GGNCC 3 cut(s) 245, 395, 953
BmiI GGNNCC 2 cut(s) 396, 397
BmrFI CCNGG 1 cut(s) 596
BmsI GCATC 3 cut(s) 40, 148, 690
BpiI GAAGAC 4 cut(s) 317, 913, 927, 936
BpuEI CTTGAG 2 cut(s) 169, 237
BsaHI GRCGYC 2 cut(s) 5, 117
BsaJI CCNNGG 3 cut(s) 121, 231, 549
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 788, 848
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 3 cut(s) 121, 231, 549
BseGI GGATG 4 cut(s) 55, 163, 781, 802
BseLI CCNNNNNNNGG 3 cut(s) 15, 788, 848
BseMII CTCAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 19, 478, 679
BsgI GTGCAG 2 cut(s) 984, 1002
Bsh1236I CGCG 1 cut(s) 974
Bsh1285I CGRYCG 1 cut(s) 978
BshFI GGCC 2 cut(s) 548, 834
BsiEI CGRYCG 1 cut(s) 978
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 2 cut(s) 167, 398
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 3 cut(s) 15, 788, 848
BsmAI GTCTC 3 cut(s) 75, 187, 288
BsmBI CGTCTC 2 cut(s) 75, 187
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 2 cut(s) 548, 834
BsoBI CYCGRG 2 cut(s) 167, 398
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 9 cut(s) 23, 512, 600, 756, 800, 811, 862, 967, 975
Bsp68I TCGCGA 1 cut(s) 974
BspACI CCGC 6 cut(s) 217, 717, 828, 831, 871, 960
BspANI GGCC 2 cut(s) 548, 834
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 974
BspLI GGNNCC 2 cut(s) 396, 397
BspMI ACCTGC 2 cut(s) 518, 1001
BspPI GGATC 4 cut(s) 31, 520, 806, 808
BspQI GCTCTTC 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 121, 231, 549
BssMI GATC 9 cut(s) 23, 512, 600, 756, 800, 811, 862, 967, 975
BssNI GRCGYC 2 cut(s) 5, 117
BssSI CACGAG 1 cut(s) 570
BssT1I CCWWGG 2 cut(s) 121, 549
Bst2BI CACGAG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 3 cut(s) 198, 368, 888
Bst6I CTCTTC 1 cut(s) 208
BstACI GRCGYC 2 cut(s) 5, 117
BstC8I GCNNGC 2 cut(s) 546, 592
BstDEI CTNAG 1 cut(s) 285
BstEII GGTNACC 1 cut(s) 530
BstF5I GGATG 4 cut(s) 55, 163, 781, 802
BstFNI CGCG 1 cut(s) 974
BstKTI GATC 9 cut(s) 26, 515, 603, 759, 803, 814, 865, 970, 978
BstMAI GTCTC 3 cut(s) 75, 187, 288
BstMBI GATC 9 cut(s) 23, 512, 600, 756, 800, 811, 862, 967, 975
BstMCI CGRYCG 1 cut(s) 978
BstMWI GCNNNNNNNGC 7 cut(s) 158, 419, 497, 566, 667, 971, 980
BstNI CCWGG 1 cut(s) 596
BstNSI RCATGY 2 cut(s) 674, 1031
BstPI GGTNACC 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 594
BstUI CGCG 1 cut(s) 974
BstV1I GCAGC 3 cut(s) 19, 478, 679
BstV2I GAAGAC 4 cut(s) 317, 913, 927, 936
BstX2I RGATCY 4 cut(s) 23, 600, 800, 967
BstYI RGATCY 4 cut(s) 23, 600, 800, 967
BsuRI GGCC 2 cut(s) 548, 834
BtsCI GGATG 4 cut(s) 55, 163, 781, 802
BtsIMutI CAGTG 3 cut(s) 134, 373, 474
BtuMI TCGCGA 1 cut(s) 974
BveI ACCTGC 2 cut(s) 518, 1001
Cac8I GCNNGC 2 cut(s) 546, 592
Cfr13I GGNCC 3 cut(s) 245, 395, 953
CseI GACGC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 267, 444
CviAII CATG 5 cut(s) 73, 662, 671, 931, 1028
CviJI RGCY 9 cut(s) 99, 422, 491, 548, 594, 611, 834, 876, 994
CviKI_1 RGCY 9 cut(s) 99, 422, 491, 548, 594, 611, 834, 876, 994
CviQI GTAC 2 cut(s) 267, 444
DdeI CTNAG 1 cut(s) 285
DpnI GATC 9 cut(s) 25, 514, 602, 758, 802, 813, 864, 969, 977
DpnII GATC 9 cut(s) 23, 512, 600, 756, 800, 811, 862, 967, 975
DraI TTTAAA 1 cut(s) 607
DriI GACNNNNNGTC 1 cut(s) 1011
EaeI YGGCCR 1 cut(s) 832
Eam1104I CTCTTC 1 cut(s) 208
Eam1105I GACNNNNNGTC 1 cut(s) 1011
EarI CTCTTC 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 121, 549
Eco47I GGWCC 3 cut(s) 245, 395, 953
Eco57I CTGAAG 2 cut(s) 189, 311
Eco88I CYCGRG 2 cut(s) 167, 398
Eco91I GGTNACC 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 395
EcoO65I GGTNACC 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 2 cut(s) 121, 549
ErhI CCWWGG 2 cut(s) 121, 549
Esp3I CGTCTC 2 cut(s) 75, 187
FaeI CATG 5 cut(s) 76, 665, 674, 934, 1031
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 408
FatI CATG 5 cut(s) 72, 661, 670, 930, 1027
FauI CCCGC 1 cut(s) 864
FauNDI CATATG 1 cut(s) 523
Fnu4HI GCNGC 5 cut(s) 33, 492, 668, 829, 832
FokI GGATG 4 cut(s) 62, 170, 788, 809
Fsp4HI GCNGC 5 cut(s) 33, 492, 668, 829, 832
FspBI CTAG 2 cut(s) 900, 957
GluI GCNGC 5 cut(s) 33, 492, 668, 829, 832
HaeIII GGCC 2 cut(s) 548, 834
HgaI GACGC 1 cut(s) 440
Hin1I GRCGYC 2 cut(s) 5, 117
Hin1II CATG 5 cut(s) 76, 665, 674, 934, 1031
HincII GTYRAC 1 cut(s) 1005
HindII GTYRAC 1 cut(s) 1005
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 7 cut(s) 13, 86, 296, 377, 386, 464, 896
HphI GGTGA 2 cut(s) 803, 872
Hpy166II GTNNAC 3 cut(s) 580, 676, 1005
Hpy188I TCNGA 6 cut(s) 91, 208, 288, 330, 541, 949
Hpy188III TCNNGA 4 cut(s) 186, 754, 809, 973
Hpy8I GTNNAC 3 cut(s) 580, 676, 1005
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 2 cut(s) 258, 580
HpyCH4III ACNGT 3 cut(s) 198, 368, 888
HpyCH4IV ACGT 2 cut(s) 5, 117
HpyCH4V TGCA 8 cut(s) 275, 449, 527, 661, 703, 883, 965, 983
HpyF10VI GCNNNNNNNGC 7 cut(s) 158, 419, 497, 566, 667, 971, 980
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 2 cut(s) 5, 117
Hsp92I GRCGYC 2 cut(s) 5, 117
Hsp92II CATG 5 cut(s) 76, 665, 674, 934, 1031
KflI GGGWCCC 1 cut(s) 395
Kzo9I GATC 9 cut(s) 23, 512, 600, 756, 800, 811, 862, 967, 975
LguI GCTCTTC 1 cut(s) 208
LmnI GCTCC 3 cut(s) 74, 419, 454
LpnPI CCDG 6 cut(s) 5, 513, 530, 581, 608, 996
Lsp1109I GCAGC 3 cut(s) 19, 478, 679
LweI GCATC 3 cut(s) 40, 148, 690
MaeI CTAG 2 cut(s) 900, 957
MaeII ACGT 2 cut(s) 5, 117
MaeIII GTNAC 1 cut(s) 530
MalI GATC 9 cut(s) 25, 514, 602, 758, 802, 813, 864, 969, 977
MboI GATC 9 cut(s) 23, 512, 600, 756, 800, 811, 862, 967, 975
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 4 cut(s) 23, 600, 800, 967
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 4 cut(s) 352, 563, 651, 837
MlyI GAGTC 2 cut(s) 7, 95
MmeI TCCRAC 2 cut(s) 69, 135
MnlI CCTC 9 cut(s) 40, 133, 193, 226, 568, 707, 787, 852, 899
MseI TTAA 5 cut(s) 111, 306, 606, 786, 1042
MspR9I CCNGG 1 cut(s) 596
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 596
MvnI CGCG 1 cut(s) 974
MwoI GCNNNNNNNGC 7 cut(s) 158, 419, 497, 566, 667, 971, 980
NdeI CATATG 1 cut(s) 523
NdeII GATC 9 cut(s) 23, 512, 600, 756, 800, 811, 862, 967, 975
NlaIII CATG 5 cut(s) 76, 665, 674, 934, 1031
NlaIV GGNNCC 2 cut(s) 396, 397
NmeAIII GCCGAG 2 cut(s) 79, 256
NruI TCGCGA 1 cut(s) 974
NspI RCATGY 2 cut(s) 674, 1031
PaeR7I CTCGAG 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 208
PfeI GAWTC 5 cut(s) 296, 377, 386, 464, 896
PflFI GACNNNGTC 1 cut(s) 917
PkrI GCNGC 5 cut(s) 34, 493, 669, 830, 833
Ple19I CGATCG 1 cut(s) 978
PleI GAGTC 2 cut(s) 7, 94
PpsI GAGTC 2 cut(s) 7, 94
PpuMI RGGWCCY 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 594
PspEI GGTNACC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 2 cut(s) 396, 397
PspPI GGNCC 3 cut(s) 245, 395, 953
PspPPI RGGWCCY 1 cut(s) 395
PspXI VCTCGAGB 1 cut(s) 167
PsuI RGATCY 4 cut(s) 23, 600, 800, 967
PsyI GACNNNGTC 1 cut(s) 917
PvuI CGATCG 1 cut(s) 978
RruI TCGCGA 1 cut(s) 974
RsaI GTAC 2 cut(s) 268, 445
RsaNI GTAC 2 cut(s) 267, 444
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 5 cut(s) 111, 306, 606, 786, 1042
SatI GCNGC 5 cut(s) 33, 492, 668, 829, 832
Sau3AI GATC 9 cut(s) 23, 512, 600, 756, 800, 811, 862, 967, 975
Sau96I GGNCC 3 cut(s) 245, 395, 953
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 2 cut(s) 7, 95
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 1 cut(s) 203
SfaNI GCATC 3 cut(s) 40, 148, 690
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 3 cut(s) 245, 395, 953
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 3 cut(s) 167, 184, 252
SmoI CTYRAG 3 cut(s) 167, 184, 252
Sse9I AATT 4 cut(s) 352, 563, 651, 837
SsiI CCGC 6 cut(s) 217, 717, 828, 831, 871, 960
SspMI CTAG 2 cut(s) 900, 957
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 2 cut(s) 121, 549
TaaI ACNGT 3 cut(s) 198, 368, 888
TaiI ACGT 2 cut(s) 8, 120
TaqI TCGA 2 cut(s) 168, 759
TasI AATT 4 cut(s) 352, 563, 651, 837
TatI WGTACW 1 cut(s) 443
TauI GCSGC 2 cut(s) 831, 834
TfiI GAWTC 5 cut(s) 296, 377, 386, 464, 896
Tru1I TTAA 5 cut(s) 111, 306, 606, 786, 1042
Tru9I TTAA 5 cut(s) 111, 306, 606, 786, 1042
TscAI CASTG 3 cut(s) 134, 373, 474
TseI GCWGC 3 cut(s) 32, 491, 667
TspDTI ATGAA 2 cut(s) 348, 365
TspGWI ACGGA 2 cut(s) 525, 804
TspRI CASTG 3 cut(s) 134, 373, 474
Tth111I GACNNNGTC 1 cut(s) 917
VpaK11BI GGWCC 3 cut(s) 245, 395, 953
XapI RAATTY 2 cut(s) 352, 837
XceI RCATGY 2 cut(s) 674, 1031
XhoI CTCGAG 1 cut(s) 167
XspI CTAG 2 cut(s) 900, 957
ZraI GACGTC 2 cut(s) 6, 118
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.