Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

15670307 .. 15671682

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCAAGAGAAATCAGAAAGATTTCAGGCTTGGAAGTCACAAATAAGAGAAGTCGCATTCGATGCTGAAGTGCTTATAGAAACTTACATCAGTGAGGCAGCAGGACGAACTTCATGGAGAAAAGTCCTTCAGCCAATTCATCTTAGGAAAATCCGAAGAAAAATTGAAGACATCGAGGCCAGGATGGACGTTATCTCAAAACAAAAGGAAAGCTTCGGCATAAGTGGCAACAATCAGGACGGAGGTGAAGCAGTGAATTTAAGAGATAAAAGGTTGCAGTGCTGGAGACACCCATCACCGAACGTGCAGGAAGATGATTTGGTTGACCTTGTTGACGACACCACGGCGTTGATAACACAATTGTCTTCAATGGACAGGAGCCGTTGTGTAGTTTCTATTGTGGGAATGGGAGGATTGGGCAAGACCACTCTGGCAAAGAAGTTGTACCATCACCCTCAACTTGGAAAACAATTTGCTTGTAGATCCTTTGTTTATGTATCTCAAGAGTACAAAAGAAGAGAAATTCTACAAAAAATCATTGAAGATGTACGTTGTCCTCACGATACAGTTGATTTAGAGAAAGTAGAAGAGAAGAAGATGGTTGAAATGCTACACAAGTTCCTGCGCGATAAGAGGTATCTGGTTGTTCTTGATGATACACTAGGCCATATACATCATCAGACGACACTTTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

233

Amino Acids

27.06

Weight (kDa)

8.81

Isoelectric Point (pI)

57.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	115 - 220	3.5e-25	NB-ARC domain
AAA_22	PF13401	130 - 219	3e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	627
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	256, 522
AcuI	CTGAAG	2 cut(s)	87, 113
AfaI	GTAC	3 cut(s)	446, 509, 549
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	4 cut(s)	167, 369, 542, 605
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	477
AoxI	GGCC	2 cut(s)	177, 664
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	256, 522
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	627
AsuHPI	GGTGA	3 cut(s)	257, 288, 443
BbsI	GAAGAC	2 cut(s)	174, 357
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	4 cut(s)	178, 301, 456, 592
BceAI	ACGGC	2 cut(s)	360, 366
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	662
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	380
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	174, 357
BpmI	CTGGAG	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	179, 666
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	179, 666
Bsp143I	GATC	1 cut(s)	482
BspANI	GGCC	2 cut(s)	179, 666
BspFNI	CGCG	1 cut(s)	627
BspLI	GGNNCC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	2 cut(s)	511, 582
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	1 cut(s)	485
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	482
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 225
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	174, 357
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	179, 666
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	2 cut(s)	258, 284
BtsIMutI	CAGTG	3 cut(s)	97, 258, 284
CfoI	GCGC	1 cut(s)	627
Csp6I	GTAC	3 cut(s)	445, 508, 548
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	6 cut(s)	29, 133, 179, 213, 381, 666
CviKI_1	RGCY	6 cut(s)	29, 133, 179, 213, 381, 666
CviQI	GTAC	3 cut(s)	445, 508, 548
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	1 cut(s)	484
DpnII	GATC	1 cut(s)	482
Eam1104I	CTCTTC	2 cut(s)	511, 582
EarI	CTCTTC	2 cut(s)	511, 582
Eco57I	CTGAAG	2 cut(s)	87, 113
EcoRII	CCWGG	1 cut(s)	179
FaeI	CATG	1 cut(s)	117
FaiI	YATR	6 cut(s)	77, 115, 221, 495, 669, 671
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	662
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	179, 666
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	2 cut(s)	325, 334
HindII	GTYRAC	2 cut(s)	325, 334
HindIII	AAGCTT	1 cut(s)	211
HphI	GGTGA	3 cut(s)	257, 288, 443
Hpy166II	GTNNAC	2 cut(s)	325, 334
Hpy188I	TCNGA	4 cut(s)	16, 155, 681, 695
Hpy188III	TCNNGA	4 cut(s)	236, 503, 560, 650
Hpy8I	GTNNAC	2 cut(s)	325, 334
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	3 cut(s)	189, 303, 550
HpyCH4V	TGCA	3 cut(s)	4, 277, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 225
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	3 cut(s)	189, 303, 550
Hsp92II	CATG	1 cut(s)	117
HspAI	GCGC	1 cut(s)	625
Kzo9I	GATC	1 cut(s)	482
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	662
MaeII	ACGT	3 cut(s)	189, 303, 550
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	1 cut(s)	484
MboI	GATC	1 cut(s)	482
MboII	GAAGA	9 cut(s)	168, 179, 323, 357, 528, 554, 599, 604, 607
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	1 cut(s)	482
MluCI	AATT	6 cut(s)	135, 162, 256, 359, 470, 522
MnlI	CCTC	7 cut(s)	88, 169, 236, 404, 465, 567, 627
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	62, 225
NdeII	GATC	1 cut(s)	482
NlaIII	CATG	1 cut(s)	117
NlaIV	GGNNCC	1 cut(s)	380
NmuCI	GTSAC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	482
RsaI	GTAC	3 cut(s)	446, 509, 549
RsaNI	GTAC	3 cut(s)	445, 508, 548
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	8 cut(s)	192, 215, 247, 275, 306, 330, 553, 638
SfaNI	GCATC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	6 cut(s)	135, 162, 256, 359, 470, 522
SspMI	CTAG	1 cut(s)	662
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	3 cut(s)	192, 306, 553
TaqI	TCGA	2 cut(s)	60, 174
TasI	AATT	6 cut(s)	135, 162, 256, 359, 470, 522
TatI	WGTACW	1 cut(s)	507
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	3 cut(s)	97, 258, 284
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	102, 128
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	3 cut(s)	97, 258, 284
XapI	RAATTY	2 cut(s)	256, 522
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.