Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

2939785 .. 2940840

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28575

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGTGGAACATGCTGTTTCGACTGCTGTCACAAGGCTCACAACTTGGTTGATTGAAGAAGCAGTTCTATTGAAAGGTGTGAGTGAGAAAGTTCAGCATCTCAGAGACAAACTGAGTTGGATGCAAGGTTTCCTCCAGGATGCTGATGCCGTGCAAGAGAGATCAGTAAGATTTCAGACTTTGGTGTCACAAATAAGAGAAGTGGCATTCGATGCTGAAGTGGCAATAGAAAGTTACATCAGCAAGCAGGCAGCAGCACGAAGGTCATGGAGAAAAGTCCTGAAGCCAATTTATCGTCGCCGAATCCGAAAAAAAATCGAAAAGATCCAGGCCAGGATGGAGAAAATCTCCAAAGATAAGGAAATTTTCGGCACAGCTAGCATGAACAATCAGGAAGGAGGTGAAGCGCTGATTTCAAAAAATGAAATGTTGCGGTGGTGGAGACAACCTTCACCGAACATACAGGAAGATGATTTGATTGACCTTGTTGAAGACACCGAGGCGTTGATAACACAACTGTGCACTATGGAGAGGAGTCGTTCTGTAGTTTCTATTGTGGGCATGGGAGGTTTGGGCAAAACCACTCTAGCAAAAAAATTGTACAATCATCCTGATCTTGGGAACCAATTTCATTGTAGATCCTTTGTCTATGTATCCCAAGAGTTCAACAGGAGAGAGATTCTACAGAGAATCATTAAAGATGTAGGTTGTCCTCACAACAGAGATGGGTTGGGGAAACTAGAAGAGGAGATGATGGTAGAAATGCTGCATATGTTCCTGAAAGATAGGAGGTATCTGGTGGTTCTTGATGATATATGGAAAAAGGAGGTTTGGGATGGTCTTCAAGCTGCATTTCCTAGTGGGGAGATGGGAAGTAAGGTGATGGTCACCACTCGCTTTAGGGATGTTGCTGTATATGCTGATCCAAGGAGCACTCCCCATGAGCCACGGATGTTAACAGAAGATCGACGAGAGCTTGGAACTTGTCCTCAAGAAAGCACTCCCGGGAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

338

Amino Acids

38.95

Weight (kDa)

8.56

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 92	2.3e-19	Rx N-terminal domain
NB-ARC	PF00931	166 - 322	2.5e-40	NB-ARC domain
AAA_22	PF13401	179 - 272	1.8e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	184
AciI	CCGC	1 cut(s)	433
AclWI	GGATC	3 cut(s)	319, 633, 917
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	2 cut(s)	237, 302
AfaI	GTAC	1 cut(s)	602
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	617, 1010
AgsI	TTSAA	6 cut(s)	56, 73, 417, 491, 667, 845
AjnI	CCWGG	3 cut(s)	135, 327, 332
AleI	CACNNNNGTG	1 cut(s)	517
AluBI	AGCT	3 cut(s)	377, 848, 976
AluI	AGCT	3 cut(s)	377, 848, 976
Alw21I	GWGCWC	2 cut(s)	524, 935
Alw26I	GTCTC	2 cut(s)	99, 436
Alw44I	GTGCAC	1 cut(s)	520
AlwI	GGATC	3 cut(s)	319, 633, 917
Ama87I	CYCGRG	1 cut(s)	1004
Aor51HI	AGCGCT	1 cut(s)	408
AoxI	GGCC	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	520
ApeKI	GCWGC	4 cut(s)	251, 254, 766, 848
ApoI	RAATTY	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	409
AsuC2I	CCSGG	2 cut(s)	1005, 1006
AsuHPI	GGTGA	4 cut(s)	413, 444, 880, 892
AsuNHI	GCTAGC	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	1004
BaeGI	GKGCMC	1 cut(s)	524
BbsI	GAAGAC	2 cut(s)	498, 833
Bbv12I	GWGCWC	2 cut(s)	524, 935
BbvI	GCAGC	4 cut(s)	263, 266, 753, 835
BccI	CCATC	6 cut(s)	331, 719, 748, 830, 862, 877
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	3 cut(s)	137, 329, 334
BciVI	GTATCC	1 cut(s)	664
BcnI	CCSGG	2 cut(s)	1005, 1006
BcoDI	GTCTC	2 cut(s)	99, 436
BfaI	CTAG	4 cut(s)	378, 587, 740, 858
BfmI	CTRYAG	2 cut(s)	543, 683
BfoI	RGCGCY	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	664
BisI	GCNGC	4 cut(s)	252, 255, 767, 849
BlsI	GCNGC	4 cut(s)	253, 256, 768, 850
Bme1390I	CCNGG	5 cut(s)	137, 329, 334, 1005, 1006
BmeT110I	CYCGRG	1 cut(s)	1004
BmiI	GGNNCC	1 cut(s)	623
BmrFI	CCNGG	5 cut(s)	137, 329, 334, 1005, 1006
BmsI	GCATC	5 cut(s)	106, 111, 130, 136, 202
BmtI	GCTAGC	1 cut(s)	381
BoxI	GACNNNNGTC	1 cut(s)	26
BpiI	GAAGAC	2 cut(s)	498, 833
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	975
BpuMI	CCSGG	2 cut(s)	1005, 1006
BsaJI	CCNNGG	4 cut(s)	498, 926, 947, 1004
Bsc4I	CCNNNNNNNGG	2 cut(s)	617, 1010
BseBI	CCWGG	3 cut(s)	137, 329, 334
BseDI	CCNNGG	4 cut(s)	498, 926, 947, 1004
BseGI	GGATG	7 cut(s)	126, 145, 342, 607, 841, 910, 957
BseLI	CCNNNNNNNGG	2 cut(s)	617, 1010
BseMII	CTCAG	2 cut(s)	104, 115
BseRI	GAGGAG	2 cut(s)	547, 761
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	4 cut(s)	263, 266, 753, 835
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	524, 935
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	1 cut(s)	1005
BslI	CCNNNNNNNGG	2 cut(s)	617, 1010
BsmAI	GTCTC	2 cut(s)	99, 436
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	1004
Bsp1286I	GDGCHC	2 cut(s)	524, 935
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	6 cut(s)	161, 324, 613, 638, 922, 964
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	105, 114
BspLI	GGNNCC	1 cut(s)	623
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	319, 633, 917
BsrGI	TGTACA	1 cut(s)	600
BssECI	CCNNGG	4 cut(s)	498, 926, 947, 1004
BssMI	GATC	6 cut(s)	161, 324, 613, 638, 922, 964
BssT1I	CCWWGG	1 cut(s)	926
Bst2UI	CCWGG	3 cut(s)	137, 329, 334
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	738
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	600
BstC8I	GCNNGC	3 cut(s)	245, 249, 379
BstDEI	CTNAG	2 cut(s)	101, 113
BstDSI	CCRYGG	1 cut(s)	947
BstEII	GGTNACC	1 cut(s)	886
BstF5I	GGATG	7 cut(s)	126, 145, 342, 607, 841, 910, 957
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	6 cut(s)	164, 327, 616, 641, 925, 967
BstMAI	GTCTC	2 cut(s)	99, 436
BstMBI	GATC	6 cut(s)	161, 324, 613, 638, 922, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 221, 378, 917
BstNI	CCWGG	3 cut(s)	137, 329, 334
BstNSI	RCATGY	1 cut(s)	14
BstPAI	GACNNNNGTC	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	886
BstSCI	CCNGG	5 cut(s)	135, 327, 332, 1003, 1004
BstSFI	CTRYAG	2 cut(s)	543, 683
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	4 cut(s)	263, 266, 753, 835
BstV2I	GAAGAC	2 cut(s)	498, 833
BstX2I	RGATCY	2 cut(s)	324, 638
BstYI	RGATCY	2 cut(s)	324, 638
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	947
BtsCI	GGATG	7 cut(s)	126, 145, 342, 607, 841, 910, 957
Cac8I	GCNNGC	3 cut(s)	245, 249, 379
CfoI	GCGC	1 cut(s)	409
Cfr9I	CCCGGG	1 cut(s)	1004
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	5 cut(s)	11, 267, 382, 562, 941
CviJI	RGCY	7 cut(s)	37, 286, 332, 377, 848, 946, 976
CviKI_1	RGCY	7 cut(s)	37, 286, 332, 377, 848, 946, 976
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	2 cut(s)	101, 113
DpnI	GATC	6 cut(s)	163, 326, 615, 640, 924, 966
DpnII	GATC	6 cut(s)	161, 324, 613, 638, 922, 964
DrdI	GACNNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	926
Eco47III	AGCGCT	1 cut(s)	408
Eco57I	CTGAAG	2 cut(s)	237, 302
Eco88I	CYCGRG	1 cut(s)	1004
Eco91I	GGTNACC	1 cut(s)	886
EcoO65I	GGTNACC	1 cut(s)	886
EcoRII	CCWGG	3 cut(s)	135, 327, 332
EcoT14I	CCWWGG	1 cut(s)	926
ErhI	CCWWGG	1 cut(s)	926
FaeI	CATG	5 cut(s)	14, 270, 385, 565, 944
FatI	CATG	5 cut(s)	10, 266, 381, 561, 940
FauNDI	CATATG	1 cut(s)	771
Fnu4HI	GCNGC	4 cut(s)	252, 255, 767, 849
FokI	GGATG	7 cut(s)	133, 152, 349, 594, 848, 917, 964
Fsp4HI	GCNGC	4 cut(s)	252, 255, 767, 849
FspBI	CTAG	4 cut(s)	378, 587, 740, 858
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	4 cut(s)	252, 255, 767, 849
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	1005
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	5 cut(s)	14, 270, 385, 565, 944
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HincII	GTYRAC	1 cut(s)	957
HindII	GTYRAC	1 cut(s)	957
HinfI	GANTC	4 cut(s)	303, 535, 679, 690
HpaI	GTTAAC	1 cut(s)	957
HpaII	CCGG	1 cut(s)	1005
HphI	GGTGA	4 cut(s)	413, 444, 880, 892
Hpy166II	GTNNAC	2 cut(s)	522, 957
Hpy188I	TCNGA	3 cut(s)	104, 177, 308
Hpy188III	TCNNGA	6 cut(s)	280, 392, 611, 778, 806, 992
Hpy8I	GTNNAC	2 cut(s)	522, 957
Hpy99I	CGWCG	2 cut(s)	300, 972
HpyAV	CCTTC	3 cut(s)	255, 389, 459
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4V	TGCA	5 cut(s)	124, 154, 522, 769, 851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 221, 378, 917
HpyF3I	CTNAG	2 cut(s)	101, 113
Hsp92II	CATG	5 cut(s)	14, 270, 385, 565, 944
HspAI	GCGC	1 cut(s)	407
KspAI	GTTAAC	1 cut(s)	957
Kzo9I	GATC	6 cut(s)	161, 324, 613, 638, 922, 964
LmnI	GCTCC	1 cut(s)	930
Lsp1109I	GCAGC	4 cut(s)	263, 266, 753, 835
LweI	GCATC	5 cut(s)	106, 111, 130, 136, 202
MaeI	CTAG	4 cut(s)	378, 587, 740, 858
MaeIII	GTNAC	4 cut(s)	28, 186, 233, 886
MalI	GATC	6 cut(s)	163, 326, 615, 640, 924, 966
MboI	GATC	6 cut(s)	161, 324, 613, 638, 922, 964
MboII	GAAGA	6 cut(s)	68, 479, 503, 755, 833, 974
MflI	RGATCY	2 cut(s)	324, 638
MhlI	GDGCHC	2 cut(s)	524, 935
MluCI	AATT	4 cut(s)	288, 363, 596, 626
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	2 cut(s)	696, 956
MslI	CAYNNNNRTG	1 cut(s)	517
MspI	CCGG	1 cut(s)	1005
MspR9I	CCNGG	5 cut(s)	137, 329, 334, 1005, 1006
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	3 cut(s)	137, 329, 334
MwoI	GCNNNNNNNGC	4 cut(s)	212, 221, 378, 917
NciI	CCSGG	2 cut(s)	1005, 1006
NdeI	CATATG	1 cut(s)	771
NdeII	GATC	6 cut(s)	161, 324, 613, 638, 922, 964
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	5 cut(s)	14, 270, 385, 565, 944
NlaIV	GGNNCC	1 cut(s)	623
NmuCI	GTSAC	3 cut(s)	28, 186, 886
NspI	RCATGY	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PctI	GAATGC	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	3 cut(s)	303, 679, 690
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	253, 256, 768, 850
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
PshAI	GACNNNNGTC	1 cut(s)	26
Psp6I	CCWGG	3 cut(s)	135, 327, 332
PspEI	GGTNACC	1 cut(s)	886
PspGI	CCWGG	3 cut(s)	135, 327, 332
PspN4I	GGNNCC	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	324, 638
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	517
SaqAI	TTAA	2 cut(s)	696, 956
SatI	GCNGC	4 cut(s)	252, 255, 767, 849
Sau3AI	GATC	6 cut(s)	161, 324, 613, 638, 922, 964
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	5 cut(s)	137, 329, 334, 1005, 1006
SduI	GDGCHC	2 cut(s)	524, 935
SfaNI	GCATC	5 cut(s)	106, 111, 130, 136, 202
SfcI	CTRYAG	2 cut(s)	543, 683
SmaI	CCCGGG	1 cut(s)	1006
SmiMI	CAYNNNNRTG	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	990
SmoI	CTYRAG	1 cut(s)	990
Sse9I	AATT	4 cut(s)	288, 363, 596, 626
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	4 cut(s)	378, 587, 740, 858
StyD4I	CCNGG	5 cut(s)	135, 327, 332, 1003, 1004
StyI	CCWWGG	1 cut(s)	926
TaaI	ACNGT	1 cut(s)	519
TaqI	TCGA	4 cut(s)	20, 210, 318, 967
TasI	AATT	4 cut(s)	288, 363, 596, 626
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	3 cut(s)	303, 679, 690
Tru1I	TTAA	2 cut(s)	696, 956
Tru9I	TTAA	2 cut(s)	696, 956
TseFI	GTSAC	3 cut(s)	28, 186, 886
TseI	GCWGC	4 cut(s)	251, 254, 766, 848
Tsp45I	GTSAC	3 cut(s)	28, 186, 886
TspDTI	ATGAA	3 cut(s)	398, 438, 620
TspGWI	ACGGA	1 cut(s)	964
TspMI	CCCGGG	1 cut(s)	1004
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	363
XceI	RCATGY	1 cut(s)	14
XmaI	CCCGGG	1 cut(s)	1004
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	4 cut(s)	378, 587, 740, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.