Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Reverse (-)

31263351 .. 31264019

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG300900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATTAGTCTTCGACGACTGATGATACGAAGAATATCACGGGAGAGGGTAACATTACTGATCTCCATAGTAAAACGATTGCGCCACCTTCAATCATTGTCGCTGACCAATAATGAAATTGAAGAGGAAATATTTCCACCACTTGACGGGTTATCTCACTGTGACCATCTTCAGAAGCTTCGTTTATGTGGAAAGATAGAGAAGCTACCAGATGCAAATGGATTCCCACGGAACCTCATAAAGCTAGCTTTGCTGAGATCCAACCTCCAAAAAGATTCAATAGTTATACTAGAGAGGTTGCCAAACTTAAAGATGCTTTCCTTGGAGCATGGATCTTACCCCTTCAATGAATTGGTTTGCTCCTCGGAAGGGTTTCCGGAACTGCAAGTTCTACACTTAATATGGGAGAGGTTGGAAGTTTGGAAGGTGGAAGAAGGGGCACTGAAGAAGCTCAGGCAGCTAACGATAGACCGTTGTTCACTATTAAAGCAGGTTCCAGAAGGATTGAAGTCATTGACTGCTCTTCAGGAAATAAATATTAATGATTCACCTGACTTAGAACACATGCTTCGAACTAGTGAAGACCTGATCGAATTCATAAAAAAACACTCGATCAAATTAGTGCATAGATATGATTGGGATCTTATGAAATGGTCTGCATACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

222

Amino Acids

26.04

Weight (kDa)

8.65

Isoelectric Point (pI)

61.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	3 - 181	2.7e-12	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	481
AccIII	TCCGGA	1 cut(s)	376
AclWI	GGATC	3 cut(s)	252, 340, 648
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	3 cut(s)	155, 464, 509
AfiI	CCNNNNNNNGG	2 cut(s)	146, 369
AgsI	TTSAA	5 cut(s)	92, 122, 279, 346, 508
AhlI	ACTAGT	1 cut(s)	575
AluBI	AGCT	6 cut(s)	178, 205, 244, 248, 451, 460
AluI	AGCT	6 cut(s)	178, 205, 244, 248, 451, 460
AlwI	GGATC	3 cut(s)	252, 340, 648
Aor13HI	TCCGGA	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	457
ApoI	RAATTY	1 cut(s)	593
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	2 cut(s)	132, 372
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	540
AsuII	TTCGAA	1 cut(s)	571
AsuNHI	GCTAGC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	442
BbsI	GAAGAC	2 cut(s)	2, 588
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	174
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	3 cut(s)	245, 290, 576
BfuAI	ACCTGC	1 cut(s)	481
BisI	GCNGC	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	459
BmiI	GGNNCC	2 cut(s)	233, 495
BmsI	GCATC	2 cut(s)	202, 303
BmtI	GCTAGC	1 cut(s)	248
BpiI	GAAGAC	2 cut(s)	2, 588
Bpu10I	CCTNAGC	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	571
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	3 cut(s)	227, 321, 363
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 369
Bse8I	GATNNNNATC	1 cut(s)	639
BseAI	TCCGGA	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	227, 321, 363
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	146, 369
BseMII	CTCAG	2 cut(s)	245, 466
BseRI	GAGGAG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	146, 369
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	6 cut(s)	60, 257, 332, 588, 612, 640
BspCNI	CTCAG	2 cut(s)	246, 465
BspEI	TCCGGA	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	233, 495
BspMI	ACCTGC	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	3 cut(s)	252, 340, 648
BspQI	GCTCTTC	1 cut(s)	528
BspT104I	TTCGAA	1 cut(s)	571
BssECI	CCNNGG	3 cut(s)	227, 321, 363
BssMI	GATC	6 cut(s)	60, 257, 332, 588, 612, 640
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	161, 473
Bst6I	CTCTTC	2 cut(s)	117, 528
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	254, 452, 556
BstDSI	CCRYGG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	6 cut(s)	63, 260, 335, 591, 615, 643
BstMBI	GATC	6 cut(s)	60, 257, 332, 588, 612, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 457
BstNSI	RCATGY	1 cut(s)	568
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	469
BstV2I	GAAGAC	2 cut(s)	2, 588
BstX2I	RGATCY	3 cut(s)	257, 332, 640
BstYI	RGATCY	3 cut(s)	257, 332, 640
BtgI	CCRYGG	1 cut(s)	227
BtsIMutI	CAGTG	3 cut(s)	157, 440, 664
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	84
CviAII	CATG	2 cut(s)	329, 565
CviJI	RGCY	6 cut(s)	178, 205, 244, 248, 451, 460
CviKI_1	RGCY	6 cut(s)	178, 205, 244, 248, 451, 460
DdeI	CTNAG	3 cut(s)	254, 452, 556
DpnI	GATC	6 cut(s)	62, 259, 334, 590, 614, 642
DpnII	GATC	6 cut(s)	60, 257, 332, 588, 612, 640
Eam1104I	CTCTTC	2 cut(s)	117, 528
EarI	CTCTTC	2 cut(s)	117, 528
Eco130I	CCWWGG	1 cut(s)	321
Eco57I	CTGAAG	3 cut(s)	155, 464, 509
EcoRI	GAATTC	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	332, 568
FatI	CATG	2 cut(s)	328, 564
Fnu4HI	GCNGC	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	458
FspBI	CTAG	3 cut(s)	245, 290, 576
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	458
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	332, 568
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	3 cut(s)	222, 275, 545
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	540
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	2 cut(s)	174, 367
Hpy188III	TCNNGA	3 cut(s)	377, 497, 527
Hpy8I	GTNNAC	1 cut(s)	479
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	6 cut(s)	98, 352, 362, 418, 428, 494
HpyCH4III	ACNGT	2 cut(s)	161, 473
HpyCH4V	TGCA	4 cut(s)	215, 385, 625, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 457
HpyF3I	CTNAG	3 cut(s)	254, 452, 556
Hsp92II	CATG	2 cut(s)	332, 568
HspAI	GCGC	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	376
Kzo9I	GATC	6 cut(s)	60, 257, 332, 588, 612, 640
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	2 cut(s)	325, 365
LpnPI	CCDG	8 cut(s)	222, 390, 439, 476, 510, 512, 564, 599
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	2 cut(s)	202, 303
MaeI	CTAG	3 cut(s)	245, 290, 576
MaeIII	GTNAC	2 cut(s)	49, 161
MalI	GATC	6 cut(s)	62, 259, 334, 590, 614, 642
MboI	GATC	6 cut(s)	60, 257, 332, 588, 612, 640
MboII	GAAGA	7 cut(s)	42, 134, 161, 443, 457, 515, 593
MflI	RGATCY	3 cut(s)	257, 332, 640
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	4 cut(s)	117, 350, 593, 617
MmeI	TCCRAC	2 cut(s)	285, 393
MnlI	CCTC	7 cut(s)	39, 118, 245, 275, 288, 373, 402
MroI	TCCGGA	1 cut(s)	376
MroXI	GAANNNNTTC	2 cut(s)	132, 372
MseI	TTAA	4 cut(s)	308, 398, 485, 540
MslI	CAYNNNNRTG	1 cut(s)	630
MspI	CCGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	250, 457
NdeII	GATC	6 cut(s)	60, 257, 332, 588, 612, 640
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	2 cut(s)	332, 568
NlaIV	GGNNCC	2 cut(s)	233, 495
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	571
PciSI	GCTCTTC	1 cut(s)	528
PdmI	GAANNNNTTC	2 cut(s)	132, 372
PfeI	GAWTC	3 cut(s)	222, 275, 545
PkrI	GCNGC	1 cut(s)	459
PshBI	ATTAAT	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	233, 495
PsuI	RGATCY	3 cut(s)	257, 332, 640
RseI	CAYNNNNRTG	1 cut(s)	630
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	308, 398, 485, 540
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	6 cut(s)	60, 257, 332, 588, 612, 640
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	2 cut(s)	202, 303
SfuI	TTCGAA	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	630
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	4 cut(s)	117, 350, 593, 617
SspI	AATATT	2 cut(s)	132, 538
SspMI	CTAG	3 cut(s)	245, 290, 576
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	161, 473
TaqI	TCGA	4 cut(s)	13, 571, 591, 611
TasI	AATT	4 cut(s)	117, 350, 593, 617
TfiI	GAWTC	3 cut(s)	222, 275, 545
Tru1I	TTAA	4 cut(s)	308, 398, 485, 540
Tru9I	TTAA	4 cut(s)	308, 398, 485, 540
TscAI	CASTG	2 cut(s)	164, 447
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	129, 363, 586, 662
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	164, 447
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	1 cut(s)	593
XceI	RCATGY	1 cut(s)	568
XmnI	GAANNNNTTC	2 cut(s)	132, 372
XspI	CTAG	3 cut(s)	245, 290, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.