Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

38130928 .. 38132033

Gene Structure 1106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGGAATATGCTGTTTCGACTGCTGTGAAAATGATCACAAGTTGGTTAATTGAAGCAGTTCTGCTGAAAGGTGTGAGCGAGAAAGTTGAGCAGCTCAGAGACAAACTGATCAGGTGGATGCAAGGTTTCCTCAAGGATGCTGATGCCATGCAAGAAAGATCAGAAAGATTTCTGGCTTGGATGTCACAGATAAGATCAGAAGTCGCCTTCGATGCTGAAGTGCTAATAGCCAGGATGGAGCACATCTCCAAACAAAAGGAAAGTTTTGGCATAACTAGCATGAACAATCAGGAAGGAGGTGAAGCGCTGATTTCAACAAATGAAAGGTTGCGGTGGAGGAGACAACCGTCACCGAATATCCAGGAAGATGATTTGGTTGACCTTGTTGAAGACACCAAGGCCTTGATAACACACTGTCTACTATGGAGAGGAGCCGTTGTGAGGTATCTGGTTGTTCTTGATGATATATGGAAAAAGGAGGTTTGGGATGGTCTTAAAGCTGCTTTTCCTAGAGGGGAGATGGGAAGTAAGGTGATGGTTACCACTCGCTTTAGGGATATTGCTGTATATGCAGATCCAAGGAGCATTCCCCATGAGCCGCGGATGTTAACAGAAAATGAGAGCTTGGAACTTTTCCCCAAGAAAGCACTCCCAGGGCCAGGAGTGGATGATATCCCCTCTAACTTGCTGAAACCTGGAAGAGAGATGGTGGTTAAATGTGGTGGTCTGCCTCTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

247

Amino Acids

28.08

Weight (kDa)

5.79

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 89	6.1e-14	Rx N-terminal domain
NB-ARC	PF00931	140 - 219	1.8e-18	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	421
AccII	CGCG	1 cut(s)	604
AciI	CCGC	4 cut(s)	5, 334, 602, 604
AclWI	GGATC	1 cut(s)	572
AcuI	CTGAAG	1 cut(s)	240
AfeI	AGCGCT	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	444, 662
AgsI	TTSAA	3 cut(s)	56, 318, 392
AjnI	CCWGG	5 cut(s)	233, 363, 655, 661, 697
AluBI	AGCT	3 cut(s)	97, 503, 627
AluI	AGCT	3 cut(s)	97, 503, 627
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	96, 337
AlwI	GGATC	1 cut(s)	572
Aor51HI	AGCGCT	1 cut(s)	309
AoxI	GGCC	2 cut(s)	402, 659
ApeKI	GCWGC	2 cut(s)	94, 503
Asp700I	GAANNNNTTC	2 cut(s)	60, 171
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	314, 345, 547
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	106, 490
BccI	CCATC	5 cut(s)	232, 485, 517, 532, 703
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	5 cut(s)	235, 365, 657, 663, 699
BclI	TGATCA	2 cut(s)	36, 111
BcoDI	GTCTC	2 cut(s)	96, 337
BfaI	CTAG	2 cut(s)	279, 513
BfoI	RGCGCY	1 cut(s)	311
BisI	GCNGC	3 cut(s)	95, 504, 602
BlsI	GCNGC	3 cut(s)	96, 505, 603
Bme1390I	CCNGG	5 cut(s)	235, 365, 657, 663, 699
BmgT120I	GGNCC	1 cut(s)	659
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	5 cut(s)	235, 365, 657, 663, 699
BmsI	GCATC	4 cut(s)	111, 130, 136, 205
BoxI	GACNNNNGTC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	5 cut(s)	399, 581, 602, 655, 656
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 662
BseBI	CCWGG	5 cut(s)	235, 365, 657, 663, 699
BseDI	CCNNGG	5 cut(s)	399, 581, 602, 655, 656
BseGI	GGATG	7 cut(s)	126, 145, 189, 243, 496, 612, 676
BseLI	CCNNNNNNNGG	2 cut(s)	444, 662
BseMII	CTCAG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	355, 447
BseXI	GCAGC	2 cut(s)	106, 490
Bsh1236I	CGCG	1 cut(s)	604
BshFI	GGCC	2 cut(s)	404, 661
BsiHKAI	GWGCWC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	444, 662
BsmAI	GTCTC	2 cut(s)	96, 337
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	404, 661
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	36, 111, 161, 197, 577
BspACI	CCGC	4 cut(s)	5, 334, 602, 604
BspANI	GGCC	2 cut(s)	404, 661
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	572
BssECI	CCNNGG	5 cut(s)	399, 581, 602, 655, 656
BssMI	GATC	5 cut(s)	36, 111, 161, 197, 577
BssT1I	CCWWGG	2 cut(s)	399, 581
Bst2UI	CCWGG	5 cut(s)	235, 365, 657, 663, 699
Bst4CI	ACNGT	2 cut(s)	351, 419
Bst6I	CTCTTC	1 cut(s)	697
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	602
BstEII	GGTNACC	1 cut(s)	541
BstF5I	GGATG	7 cut(s)	126, 145, 189, 243, 496, 612, 676
BstFNI	CGCG	1 cut(s)	604
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	5 cut(s)	39, 114, 164, 200, 580
BstMAI	GTCTC	2 cut(s)	96, 337
BstMBI	GATC	5 cut(s)	36, 111, 161, 197, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 215, 279, 572
BstNI	CCWGG	5 cut(s)	235, 365, 657, 663, 699
BstPAI	GACNNNNGTC	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	5 cut(s)	233, 363, 655, 661, 697
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	2 cut(s)	106, 490
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	404, 661
BtgI	CCRYGG	1 cut(s)	602
BtsCI	GGATG	7 cut(s)	126, 145, 189, 243, 496, 612, 676
BtsIMutI	CAGTG	1 cut(s)	415
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	659
Cfr42I	CCGCGG	1 cut(s)	605
CviAII	CATG	3 cut(s)	151, 283, 596
CviJI	RGCY	9 cut(s)	97, 179, 233, 404, 437, 503, 601, 627, 661
CviKI_1	RGCY	9 cut(s)	97, 179, 233, 404, 437, 503, 601, 627, 661
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	5 cut(s)	38, 113, 163, 199, 579
DpnII	GATC	5 cut(s)	36, 111, 161, 197, 577
Eam1104I	CTCTTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	697
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	399, 581
Eco147I	AGGCCT	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	676
Eco47III	AGCGCT	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	541
EcoO65I	GGTNACC	1 cut(s)	541
EcoRII	CCWGG	5 cut(s)	233, 363, 655, 661, 697
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	2 cut(s)	399, 581
ErhI	CCWWGG	2 cut(s)	399, 581
FaeI	CATG	3 cut(s)	154, 286, 599
FatI	CATG	3 cut(s)	150, 282, 595
FbaI	TGATCA	2 cut(s)	36, 111
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	95, 504, 602
FokI	GGATG	7 cut(s)	133, 152, 196, 250, 503, 619, 683
Fsp4HI	GCNGC	3 cut(s)	95, 504, 602
FspBI	CTAG	2 cut(s)	279, 513
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	3 cut(s)	95, 504, 602
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	404, 661
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	154, 286, 599
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	2 cut(s)	382, 612
HindII	GTYRAC	2 cut(s)	382, 612
HpaI	GTTAAC	1 cut(s)	612
HphI	GGTGA	3 cut(s)	314, 345, 547
Hpy166II	GTNNAC	3 cut(s)	382, 422, 612
Hpy188I	TCNGA	3 cut(s)	101, 166, 202
Hpy188III	TCNNGA	2 cut(s)	293, 461
Hpy8I	GTNNAC	3 cut(s)	382, 422, 612
HpyAV	CCTTC	2 cut(s)	220, 290
HpyCH4III	ACNGT	2 cut(s)	351, 419
HpyCH4V	TGCA	3 cut(s)	124, 154, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 215, 279, 572
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	154, 286, 599
HspAI	GCGC	1 cut(s)	308
Ksp22I	TGATCA	2 cut(s)	36, 111
KspAI	GTTAAC	1 cut(s)	612
KspI	CCGCGG	1 cut(s)	605
Kzo9I	GATC	5 cut(s)	36, 111, 161, 197, 577
LmnI	GCTCC	3 cut(s)	241, 434, 585
Lsp1109I	GCAGC	2 cut(s)	106, 490
LweI	GCATC	4 cut(s)	111, 130, 136, 205
MaeI	CTAG	2 cut(s)	279, 513
MaeIII	GTNAC	3 cut(s)	186, 351, 541
MalI	GATC	5 cut(s)	38, 113, 163, 199, 579
MboI	GATC	5 cut(s)	36, 111, 161, 197, 577
MboII	GAAGA	3 cut(s)	380, 404, 714
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	9 cut(s)	143, 293, 333, 425, 438, 475, 509, 691, 744
MroXI	GAANNNNTTC	2 cut(s)	60, 171
MseI	TTAA	4 cut(s)	50, 498, 611, 717
MspA1I	CMGCKG	1 cut(s)	604
MspR9I	CCNGG	5 cut(s)	235, 365, 657, 663, 699
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	5 cut(s)	235, 365, 657, 663, 699
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	4 cut(s)	11, 215, 279, 572
NdeII	GATC	5 cut(s)	36, 111, 161, 197, 577
NlaIII	CATG	3 cut(s)	154, 286, 599
NlaIV	GGNNCC	1 cut(s)	436
NmuCI	GTSAC	2 cut(s)	186, 351
PasI	CCCWGGG	1 cut(s)	656
PceI	AGGCCT	1 cut(s)	404
PctI	GAATGC	1 cut(s)	588
PdmI	GAANNNNTTC	2 cut(s)	60, 171
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	96, 505, 603
PshAI	GACNNNNGTC	1 cut(s)	349
Psp6I	CCWGG	5 cut(s)	233, 363, 655, 661, 697
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	5 cut(s)	233, 363, 655, 661, 697
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	577
SacII	CCGCGG	1 cut(s)	605
SaqAI	TTAA	4 cut(s)	50, 498, 611, 717
SatI	GCNGC	3 cut(s)	95, 504, 602
Sau3AI	GATC	5 cut(s)	36, 111, 161, 197, 577
Sau96I	GGNCC	1 cut(s)	659
ScrFI	CCNGG	5 cut(s)	235, 365, 657, 663, 699
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	4 cut(s)	111, 130, 136, 205
Sfr303I	CCGCGG	1 cut(s)	605
SgrBI	CCGCGG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	51
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	4 cut(s)	5, 334, 602, 604
SspMI	CTAG	2 cut(s)	279, 513
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	5 cut(s)	233, 363, 655, 661, 697
StyI	CCWWGG	2 cut(s)	399, 581
TaaI	ACNGT	2 cut(s)	351, 419
TaqI	TCGA	2 cut(s)	20, 213
TasI	AATT	1 cut(s)	51
TauI	GCSGC	1 cut(s)	604
Tru1I	TTAA	4 cut(s)	50, 498, 611, 717
Tru9I	TTAA	4 cut(s)	50, 498, 611, 717
TscAI	CASTG	1 cut(s)	422
TseFI	GTSAC	2 cut(s)	186, 351
TseI	GCWGC	2 cut(s)	94, 503
Tsp45I	GTSAC	2 cut(s)	186, 351
TspDTI	ATGAA	2 cut(s)	299, 339
TspRI	CASTG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	421
XmnI	GAANNNNTTC	2 cut(s)	60, 171
XspI	CTAG	2 cut(s)	279, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.