Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

2999002 .. 3001683

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG043200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGTGGAATATGCTGTTTCGACTGCTGTCACAAGGCTCACAACTTGGTTGATTGAAGAAGCAGTTCTATTGAAAGGTGTGAGTGAGAAAGTTCAGCATCTCAGAGACAAACTGAGTTGGATGCAAGGTTTCCTCCAGGATGCTGATGCCGTGCAAGAGAGATCAGTAAGATTTCAGACTTTGGTGTCACAAATAAGAGAAGTGGCATTCGATGCTGAAGTGGCAATAGAAAGTTACATCAGCAAGGCAGCAGCACGAAGGTCATGGAGAAAAGTCCTGAAGCCAATTTATCGTCGCCGAATCCGAAAAAAAATCGAAAAGATCCAGGCCAGGATGGAGAAAATCTCCAAAGATAAGGAAATTTTCGGCACAGCTAGCATGAACAATCAGGAAGGAGGTGAAGCGCTGATTTCAAAAAATGAAATGTTGCGGTGGTGGAGACAACCTTCACCGAACATACAGGAAGATGATTTGATTGACCTTGCTGAAGACACCGAGGCGTTGATAACACAACTGTGCACTATGGAGAGGAGTCGTTCTGTAGTTTCTATTGTGGGCATGGGAGGTATAGAGGGCGGAAGATGGATAGAAGATGGCTTGGCCAAAATGATTAGTCTTCAACGACTGAAGATAAGAACATTATCACGAGATGGAGTGACATTAGTGATTTCTATTGCAGAAAGATTGCGCCACCTTCAATCGTTGTCGCTGACCAACAAGGAACGTGAAGATGAATTATTTCCACCACTTGAGGGACTATCTCGCTGTGACCATCTTCAGAAGCTTCGTTTGTGTGGAAAGATAGAGAAGCTACCTGATGCCAATGGATTCCCAGGAAACCTCGTAAAGCTAGTTTTGATGAGATCCAACCTCCCAAAAGATTCAGTAGTTATACTAGAGAGGATGCCAAACTTAAAGATGCTTTCCTTGGGGTATGGATCTTACCCCTTCAATGAATTGGTTTGCTCCTCAGAAGGATTTCCGCAACTGCAAGTTCTGCACTTAATTTGGGAGAGAATGGAGGTTTGGAAGGTGGAAGAAAGGGCACTGAAGAAGCTCAGGCAGCTAAAGATATACCGTTGTTCAAAATTACAGCAGGTTCCAGAAGGATTGAAGTCATTGGCTACTCTTCAGGAATTGGATATATGTGAATCACCTGAGTTTGAACACATGCTTCGAACTAATGAAGACCTGATCGAATTCACAAGAAAATACTCGATCAAATTCGTGCAAAGACATAGCTACGATTTTATGAAATGGTCTTCAATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

424

Amino Acids

49.13

Weight (kDa)

9.04

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 91	7.3e-20	Rx N-terminal domain
LRR_14	PF23598	199 - 382	4.5e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	1087
AciI	CCGC	3 cut(s)	430, 576, 983
AclWI	GGATC	3 cut(s)	316, 858, 946
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	3 cut(s)	360, 1199, 1223
AcuI	CTGAAG	7 cut(s)	237, 299, 507, 647, 761, 1070, 1115
AfeI	AGCGCT	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	752
AjnI	CCWGG	4 cut(s)	135, 324, 329, 832
AjuI	GAANNNNNNNTTGG	2 cut(s)	1009, 1041
AleI	CACNNNNGTG	1 cut(s)	514
AluBI	AGCT	7 cut(s)	374, 784, 811, 850, 1057, 1066, 1242
AluI	AGCT	7 cut(s)	374, 784, 811, 850, 1057, 1066, 1242
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	2 cut(s)	99, 433
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	316, 858, 946
Aor51HI	AGCGCT	1 cut(s)	405
AoxI	GGCC	2 cut(s)	327, 600
ApaLI	GTGCAC	1 cut(s)	517
ApeKI	GCWGC	3 cut(s)	248, 251, 1063
ApoI	RAATTY	3 cut(s)	360, 1199, 1223
Asp700I	GAANNNNTTC	3 cut(s)	63, 738, 978
AspLEI	GCGC	2 cut(s)	406, 690
AsuHPI	GGTGA	3 cut(s)	410, 441, 1146
AsuII	TTCGAA	1 cut(s)	1177
AsuNHI	GCTAGC	1 cut(s)	374
BaeGI	GKGCMC	2 cut(s)	521, 1048
BalI	TGGCCA	1 cut(s)	602
BauI	CACGAG	1 cut(s)	645
BbsI	GAAGAC	4 cut(s)	495, 608, 1194, 1254
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	260, 263, 1075
BccI	CCATC	5 cut(s)	328, 576, 587, 644, 780
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	4 cut(s)	137, 326, 331, 834
BcoDI	GTCTC	2 cut(s)	99, 433
BfaI	CTAG	3 cut(s)	375, 851, 896
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	1087
BisI	GCNGC	3 cut(s)	249, 252, 1064
BlsI	GCNGC	3 cut(s)	250, 253, 1065
Bme1390I	CCNGG	4 cut(s)	137, 326, 331, 834
BmiI	GGNNCC	1 cut(s)	1101
BmrFI	CCNGG	4 cut(s)	137, 326, 331, 834
BmsI	GCATC	8 cut(s)	106, 111, 130, 136, 202, 808, 894, 909
BmtI	GCTAGC	1 cut(s)	378
BoxI	GACNNNNGTC	1 cut(s)	26
BpiI	GAAGAC	4 cut(s)	495, 608, 1194, 1254
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	1058
Bpu14I	TTCGAA	1 cut(s)	1177
BpuEI	CTTGAG	1 cut(s)	770
BsaJI	CCNNGG	3 cut(s)	495, 832, 927
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
BseBI	CCWGG	4 cut(s)	137, 326, 331, 834
BseDI	CCNNGG	3 cut(s)	495, 832, 927
BseGI	GGATG	4 cut(s)	126, 145, 339, 909
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMII	CTCAG	5 cut(s)	104, 115, 984, 1072, 1149
BseRI	GAGGAG	2 cut(s)	544, 958
BseSI	GKGCMC	2 cut(s)	521, 1048
BseXI	GCAGC	3 cut(s)	260, 263, 1075
BsgI	GTGCAG	1 cut(s)	983
BshFI	GGCC	2 cut(s)	329, 602
BsiHKAI	GWGCWC	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	768
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	2 cut(s)	99, 433
BsmFI	GGGAC	1 cut(s)	768
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	329, 602
Bsp119I	TTCGAA	1 cut(s)	1177
Bsp1286I	GDGCHC	2 cut(s)	521, 1048
Bsp143I	GATC	6 cut(s)	161, 321, 863, 938, 1194, 1218
BspACI	CCGC	3 cut(s)	430, 576, 983
BspANI	GGCC	2 cut(s)	329, 602
BspCNI	CTCAG	5 cut(s)	105, 114, 983, 1071, 1150
BspLI	GGNNCC	1 cut(s)	1101
BspMI	ACCTGC	1 cut(s)	1087
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	3 cut(s)	316, 858, 946
BspT104I	TTCGAA	1 cut(s)	1177
BssECI	CCNNGG	3 cut(s)	495, 832, 927
BssMI	GATC	6 cut(s)	161, 321, 863, 938, 1194, 1218
BssSI	CACGAG	1 cut(s)	645
BssT1I	CCWWGG	1 cut(s)	927
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	4 cut(s)	137, 326, 331, 834
Bst4CI	ACNGT	2 cut(s)	516, 1079
Bst6I	CTCTTC	1 cut(s)	1134
BstAPI	GCANNNNNTGC	2 cut(s)	212, 997
BstBI	TTCGAA	1 cut(s)	1177
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	5 cut(s)	101, 113, 970, 1058, 1158
BstF5I	GGATG	4 cut(s)	126, 145, 339, 909
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	2 cut(s)	406, 690
BstKTI	GATC	6 cut(s)	164, 324, 866, 941, 1197, 1221
BstMAI	GTCTC	2 cut(s)	99, 433
BstMBI	GATC	6 cut(s)	161, 321, 863, 938, 1194, 1218
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 221, 375, 997, 1063
BstNI	CCWGG	4 cut(s)	137, 326, 331, 834
BstNSI	RCATGY	1 cut(s)	1174
BstPAI	GACNNNNGTC	1 cut(s)	26
BstSCI	CCNGG	4 cut(s)	135, 324, 329, 832
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	2 cut(s)	521, 1048
BstV1I	GCAGC	3 cut(s)	260, 263, 1075
BstV2I	GAAGAC	4 cut(s)	495, 608, 1194, 1254
BstX2I	RGATCY	3 cut(s)	321, 863, 938
BstYI	RGATCY	3 cut(s)	321, 863, 938
BsuRI	GGCC	2 cut(s)	329, 602
BtsCI	GGATG	4 cut(s)	126, 145, 339, 909
BtsIMutI	CAGTG	1 cut(s)	1046
BveI	ACCTGC	1 cut(s)	1087
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	2 cut(s)	406, 690
CviAII	CATG	4 cut(s)	264, 379, 559, 1171
DdeI	CTNAG	5 cut(s)	101, 113, 970, 1058, 1158
DpnI	GATC	6 cut(s)	163, 323, 865, 940, 1196, 1220
DpnII	GATC	6 cut(s)	161, 321, 863, 938, 1194, 1218
DrdI	GACNNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	1134
EarI	CTCTTC	1 cut(s)	1134
EciI	GGCGGA	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	927
Eco47III	AGCGCT	1 cut(s)	405
Eco57I	CTGAAG	7 cut(s)	237, 299, 507, 647, 761, 1070, 1115
EcoRI	GAATTC	1 cut(s)	1199
EcoRII	CCWGG	4 cut(s)	135, 324, 329, 832
EcoT14I	CCWWGG	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	4 cut(s)	267, 382, 562, 1174
FaqI	GGGAC	1 cut(s)	768
FatI	CATG	4 cut(s)	263, 378, 558, 1170
Fnu4HI	GCNGC	3 cut(s)	249, 252, 1064
FokI	GGATG	4 cut(s)	133, 152, 346, 916
Fsp4HI	GCNGC	3 cut(s)	249, 252, 1064
FspBI	CTAG	3 cut(s)	375, 851, 896
GlaI	GCGC	2 cut(s)	405, 689
GluI	GCNGC	3 cut(s)	249, 252, 1064
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	329, 602
HhaI	GCGC	2 cut(s)	406, 690
Hin1II	CATG	4 cut(s)	267, 382, 562, 1174
Hin6I	GCGC	2 cut(s)	404, 688
HinP1I	GCGC	2 cut(s)	404, 688
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	5 cut(s)	300, 532, 828, 881, 1151
HphI	GGTGA	3 cut(s)	410, 441, 1146
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	5 cut(s)	104, 177, 305, 780, 973
Hpy188III	TCNNGA	5 cut(s)	277, 389, 645, 1103, 1133
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	8 cut(s)	252, 386, 456, 704, 958, 968, 1024, 1100
HpyCH4III	ACNGT	2 cut(s)	516, 1079
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	7 cut(s)	124, 154, 519, 677, 991, 1000, 1231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 221, 375, 997, 1063
HpyF3I	CTNAG	5 cut(s)	101, 113, 970, 1058, 1158
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	4 cut(s)	267, 382, 562, 1174
HspAI	GCGC	2 cut(s)	404, 688
Kzo9I	GATC	6 cut(s)	161, 321, 863, 938, 1194, 1218
LmnI	GCTCC	1 cut(s)	971
Lsp1109I	GCAGC	3 cut(s)	260, 263, 1075
LweI	GCATC	8 cut(s)	106, 111, 130, 136, 202, 808, 894, 909
MaeI	CTAG	3 cut(s)	375, 851, 896
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	5 cut(s)	28, 186, 233, 655, 767
MalI	GATC	6 cut(s)	163, 323, 865, 940, 1196, 1220
MboI	GATC	6 cut(s)	161, 321, 863, 938, 1194, 1218
MflI	RGATCY	3 cut(s)	321, 863, 938
MhlI	GDGCHC	2 cut(s)	521, 1048
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	9 cut(s)	285, 360, 734, 956, 1005, 1088, 1136, 1199, 1223
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	98, 891
Mox20I	TGGCCA	1 cut(s)	602
MroXI	GAANNNNTTC	3 cut(s)	63, 738, 978
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	2 cut(s)	914, 1004
MslI	CAYNNNNRTG	1 cut(s)	514
Msp20I	TGGCCA	1 cut(s)	602
MspR9I	CCNGG	4 cut(s)	137, 326, 331, 834
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	4 cut(s)	137, 326, 331, 834
MwoI	GCNNNNNNNGC	5 cut(s)	212, 221, 375, 997, 1063
NdeII	GATC	6 cut(s)	161, 321, 863, 938, 1194, 1218
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	4 cut(s)	267, 382, 562, 1174
NlaIV	GGNNCC	1 cut(s)	1101
NmuCI	GTSAC	4 cut(s)	28, 186, 655, 767
NspI	RCATGY	1 cut(s)	1174
NspV	TTCGAA	1 cut(s)	1177
OliI	CACNNNNGTG	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PctI	GAATGC	1 cut(s)	206
PdmI	GAANNNNTTC	3 cut(s)	63, 738, 978
PfeI	GAWTC	4 cut(s)	300, 828, 881, 1151
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	250, 253, 1065
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PshAI	GACNNNNGTC	1 cut(s)	26
Psp6I	CCWGG	4 cut(s)	135, 324, 329, 832
PspGI	CCWGG	4 cut(s)	135, 324, 329, 832
PspN4I	GGNNCC	1 cut(s)	1101
PsuI	RGATCY	3 cut(s)	321, 863, 938
RseI	CAYNNNNRTG	1 cut(s)	514
SaqAI	TTAA	2 cut(s)	914, 1004
SatI	GCNGC	3 cut(s)	249, 252, 1064
Sau3AI	GATC	6 cut(s)	161, 321, 863, 938, 1194, 1218
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	4 cut(s)	137, 326, 331, 834
SduI	GDGCHC	2 cut(s)	521, 1048
SfaNI	GCATC	8 cut(s)	106, 111, 130, 136, 202, 808, 894, 909
SfcI	CTRYAG	1 cut(s)	540
SfuI	TTCGAA	1 cut(s)	1177
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	9 cut(s)	285, 360, 734, 956, 1005, 1088, 1136, 1199, 1223
SsiI	CCGC	3 cut(s)	430, 576, 983
SspMI	CTAG	3 cut(s)	375, 851, 896
StyD4I	CCNGG	4 cut(s)	135, 324, 329, 832
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	2 cut(s)	516, 1079
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	6 cut(s)	20, 210, 315, 1177, 1197, 1217
TasI	AATT	9 cut(s)	285, 360, 734, 956, 1005, 1088, 1136, 1199, 1223
TfiI	GAWTC	4 cut(s)	300, 828, 881, 1151
Tru1I	TTAA	2 cut(s)	914, 1004
Tru9I	TTAA	2 cut(s)	914, 1004
TscAI	CASTG	1 cut(s)	1053
TseFI	GTSAC	4 cut(s)	28, 186, 655, 767
TseI	GCWGC	3 cut(s)	248, 251, 1063
Tsp45I	GTSAC	4 cut(s)	28, 186, 655, 767
TspDTI	ATGAA	6 cut(s)	395, 435, 747, 969, 1200, 1268
TspRI	CASTG	1 cut(s)	1053
VneI	GTGCAC	1 cut(s)	517
XapI	RAATTY	3 cut(s)	360, 1199, 1223
XceI	RCATGY	1 cut(s)	1174
XmnI	GAANNNNTTC	3 cut(s)	63, 738, 978
XspI	CTAG	3 cut(s)	375, 851, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.