Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

38133177 .. 38136321

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTGGAAAGATAGAGAAGCTACCAGATGCAAATGGGCTCCCACGAAACCTCGTAAAGCTAGTTTTGATGAGATCCAAACTCCAAAAGATTCAATAGTTATACTAGAAAGGTTGCCAAACTTAAAGATGCTTTCCTTGGAGTATGGATCTTACCCCTTCAGTGAATTGGTTTGCTCCTCAGAGGGGTTTCCGGAACTGCAAGTTCTACACTTAATATCGGAGGGGTTGGAGATTTGGAAGGTGGAAGAAAGGGCATTGAAAAAGCTGAGGAAGCTAAAGATAGACTGTTGTTCACAATTAAAGAGGGTTCCAGAAGGATTAAAGTCATTGACTACTCTTCAGGAATTAAATATTTATGAATCACCTGAGATTGAACACATGCTTCGAACCAAGGAAGACGGCTTCAAATTTTCTATCACCATTTCCCTATCCTCTTCCTTAAGGAAAGATGATAATGCCCTTAGCAAAAAAGAGGAGTTAACGGTGTTATTAATGGAGACTACAAAAAGTAGGTCTGAGATTATTTTTGAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

178

Amino Acids

20.62

Weight (kDa)

6.76

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	190
AclWI	GGATC	2 cut(s)	67, 154
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	2 cut(s)	142, 323
AfiI	CCNNNNNNNGG	1 cut(s)	183
AflII	CTTAAG	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	93, 259, 374, 406
AluBI	AGCT	4 cut(s)	20, 59, 265, 274
AluI	AGCT	4 cut(s)	20, 59, 265, 274
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	2 cut(s)	67, 154
Aor13HI	TCCGGA	1 cut(s)	190
ApoI	RAATTY	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AseI	ATTAAT	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	354, 409
AsuII	TTCGAA	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	60, 104
BfrI	CTTAAG	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	39, 309
BmsI	GCATC	2 cut(s)	17, 117
BpiI	GAAGAC	1 cut(s)	402
Bpu10I	CCTNAGC	2 cut(s)	266, 461
Bpu14I	TTCGAA	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	135, 390
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	135, 390
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	4 cut(s)	192, 257, 357, 507
BseRI	GAGGAG	2 cut(s)	166, 488
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	491
Bsp119I	TTCGAA	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp13I	TCCGGA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	72, 146
BspCNI	CTCAG	4 cut(s)	191, 258, 358, 508
BspEI	TCCGGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	39, 309
BspPI	GGATC	2 cut(s)	67, 154
BspT104I	TTCGAA	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	135, 390
BssMI	GATC	2 cut(s)	72, 146
BssT1I	CCWWGG	2 cut(s)	135, 390
Bst4CI	ACNGT	2 cut(s)	287, 484
Bst6I	CTCTTC	2 cut(s)	342, 439
BstAFI	CTTAAG	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	385
BstDEI	CTNAG	5 cut(s)	178, 266, 366, 461, 516
BstKTI	GATC	2 cut(s)	75, 149
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	2 cut(s)	72, 146
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	2 cut(s)	72, 146
BstYI	RGATCY	2 cut(s)	72, 146
BtsIMutI	CAGTG	1 cut(s)	166
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	6 cut(s)	20, 38, 59, 265, 274, 402
CviKI_1	RGCY	6 cut(s)	20, 38, 59, 265, 274, 402
DdeI	CTNAG	5 cut(s)	178, 266, 366, 461, 516
DpnI	GATC	2 cut(s)	74, 148
DpnII	GATC	2 cut(s)	72, 146
Eam1104I	CTCTTC	2 cut(s)	342, 439
EarI	CTCTTC	2 cut(s)	342, 439
Eco130I	CCWWGG	2 cut(s)	135, 390
Eco24I	GRGCYC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	142, 323
EcoT14I	CCWWGG	2 cut(s)	135, 390
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	135, 390
FaeI	CATG	1 cut(s)	382
FaiI	YATR	4 cut(s)	101, 144, 357, 380
FatI	CATG	1 cut(s)	378
FriOI	GRGCYC	1 cut(s)	40
FspBI	CTAG	2 cut(s)	60, 104
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	2 cut(s)	89, 359
HpaI	GTTAAC	1 cut(s)	480
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	2 cut(s)	354, 409
Hpy166II	GTNNAC	2 cut(s)	293, 480
Hpy188I	TCNGA	3 cut(s)	181, 220, 517
Hpy188III	TCNNGA	3 cut(s)	191, 311, 341
Hpy8I	GTNNAC	2 cut(s)	293, 480
HpyAV	CCTTC	3 cut(s)	166, 232, 308
HpyCH4III	ACNGT	2 cut(s)	287, 484
HpyCH4V	TGCA	2 cut(s)	30, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	5 cut(s)	178, 266, 366, 461, 516
Hsp92II	CATG	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	480
Kzo9I	GATC	2 cut(s)	72, 146
LmnI	GCTCC	2 cut(s)	43, 179
LpnPI	CCDG	5 cut(s)	37, 204, 324, 326, 378
LweI	GCATC	2 cut(s)	17, 117
MaeI	CTAG	2 cut(s)	60, 104
MalI	GATC	2 cut(s)	74, 148
MboI	GATC	2 cut(s)	72, 146
MboII	GAAGA	4 cut(s)	257, 329, 407, 426
MflI	RGATCY	2 cut(s)	72, 146
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	4 cut(s)	164, 296, 344, 407
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	9 cut(s)	60, 175, 187, 214, 261, 297, 442, 466, 523
MroI	TCCGGA	1 cut(s)	190
MseI	TTAA	8 cut(s)	122, 212, 299, 320, 347, 440, 479, 491
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	2 cut(s)	72, 146
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	39, 309
NspI	RCATGY	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	89, 359
PshBI	ATTAAT	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	39, 309
PsuI	RGATCY	2 cut(s)	72, 146
SaqAI	TTAA	8 cut(s)	122, 212, 299, 320, 347, 440, 479, 491
Sau3AI	GATC	2 cut(s)	72, 146
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	2 cut(s)	17, 117
SfuI	TTCGAA	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	4 cut(s)	164, 296, 344, 407
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	2 cut(s)	60, 104
StyI	CCWWGG	2 cut(s)	135, 390
TaaI	ACNGT	2 cut(s)	287, 484
TaqI	TCGA	1 cut(s)	385
TasI	AATT	4 cut(s)	164, 296, 344, 407
TfiI	GAWTC	2 cut(s)	89, 359
Tru1I	TTAA	8 cut(s)	122, 212, 299, 320, 347, 440, 479, 491
Tru9I	TTAA	8 cut(s)	122, 212, 299, 320, 347, 440, 479, 491
TscAI	CASTG	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	166
Vha464I	CTTAAG	1 cut(s)	439
VspI	ATTAAT	1 cut(s)	491
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	2 cut(s)	60, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.