Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

2866615 .. 2867169

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG039000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGAGGTTTGGGCAAAACCACTCTAGCAAAAAAATTGTACAATCTCCCTGATCTTGGGAAGCAATTTCATTGTAGATCCTTTGTCTATGTATCCCAAGAGTTCAACAGGAGAGAGATTCTACAGAGAATCAATAAAGATGTAGGTTGTCCTCACAACAGAAATGAGTTGGGGAAACTAGAAGAGGAGATGATGGTAGAAATGCTGCATATGTTCCTGAAAGATAGGAGGTATTTGGTGGTTCTTGATGATATATGGAAAAAGGAGGTTTGGGATGGTCTTCAAGCTGCATTTCCTAGTGGGGAGATGGGAAGTAAGGTGATGGTCACCACTCGCTTTAGGGATGTTGCTGTATATGCAGATCCAAGGAGCATTCCCCATGAGCCACGGATATTAACAGAAGATGAGAGCTTGGAACTGTTCCTCAAGAAAGCACTCCCGGGAGTGGATGATATCCCCTCTAACTTGCAGAATCTTGGAAGAGAGATGGTTGTTAAATGCGGTGGTCTACCTCTAGCAGTAATTGTGCTCGGAGGATTACTTCCCCGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

184

Amino Acids

20.95

Weight (kDa)

7.72

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	1 - 147	1.2e-37	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	508
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	2 cut(s)	72, 356
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	56, 445
AgsI	TTSAA	2 cut(s)	106, 284
AluBI	AGCT	2 cut(s)	287, 411
AluI	AGCT	2 cut(s)	287, 411
Alw21I	GWGCWC	1 cut(s)	531
AlwI	GGATC	2 cut(s)	72, 356
Ama87I	CYCGRG	1 cut(s)	439
ApeKI	GCWGC	2 cut(s)	205, 287
AsuC2I	CCSGG	2 cut(s)	440, 441
AsuHPI	GGTGA	2 cut(s)	319, 331
AvaI	CYCGRG	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	192, 274
BccI	CCATC	5 cut(s)	187, 269, 301, 316, 481
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	440, 441
BfaI	CTAG	4 cut(s)	26, 179, 297, 515
BfmI	CTRYAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	206, 288
BlsI	GCNGC	2 cut(s)	207, 289
Bme1390I	CCNGG	2 cut(s)	440, 441
BmeT110I	CYCGRG	1 cut(s)	439
BmrFI	CCNGG	2 cut(s)	440, 441
BpiI	GAAGAC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	440, 441
BsaJI	CCNNGG	3 cut(s)	365, 386, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 445
BseDI	CCNNGG	3 cut(s)	365, 386, 439
BseGI	GGATG	3 cut(s)	280, 349, 454
BseLI	CCNNNNNNNGG	2 cut(s)	56, 445
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	192, 274
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	56, 445
BsmI	GAATGC	1 cut(s)	372
BsoBI	CYCGRG	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	52, 77, 361
BspACI	CCGC	1 cut(s)	501
BspPI	GGATC	2 cut(s)	72, 356
BsrGI	TGTACA	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	365, 386, 439
BssMI	GATC	3 cut(s)	52, 77, 361
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	420
Bst6I	CTCTTC	2 cut(s)	177, 475
BstAUI	TGTACA	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	386
BstEII	GGTNACC	1 cut(s)	325
BstF5I	GGATG	3 cut(s)	280, 349, 454
BstKTI	GATC	3 cut(s)	55, 80, 364
BstMBI	GATC	3 cut(s)	52, 77, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	438, 439
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	192, 274
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	2 cut(s)	77, 361
BstYI	RGATCY	2 cut(s)	77, 361
BsuI	GTATCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	3 cut(s)	280, 349, 454
Cfr9I	CCCGGG	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	380
CviJI	RGCY	3 cut(s)	287, 385, 411
CviKI_1	RGCY	3 cut(s)	287, 385, 411
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	3 cut(s)	54, 79, 363
DpnII	GATC	3 cut(s)	52, 77, 361
Eam1104I	CTCTTC	2 cut(s)	177, 475
EarI	CTCTTC	2 cut(s)	177, 475
Eco130I	CCWWGG	1 cut(s)	365
Eco32I	GATATC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	439
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	1 cut(s)	383
FaiI	YATR	8 cut(s)	90, 210, 212, 254, 256, 355, 357, 381
FatI	CATG	1 cut(s)	379
FauNDI	CATATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	206, 288
FokI	GGATG	3 cut(s)	287, 356, 461
Fsp4HI	GCNGC	2 cut(s)	206, 288
FspBI	CTAG	4 cut(s)	26, 179, 297, 515
GluI	GCNGC	2 cut(s)	206, 288
HapII	CCGG	1 cut(s)	440
Hin1II	CATG	1 cut(s)	383
HinfI	GANTC	3 cut(s)	118, 129, 472
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	2 cut(s)	319, 331
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	1 cut(s)	533
Hpy188III	TCNNGA	3 cut(s)	217, 245, 427
Hpy8I	GTNNAC	1 cut(s)	509
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4V	TGCA	4 cut(s)	208, 290, 359, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	383
Kzo9I	GATC	3 cut(s)	52, 77, 361
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	4 cut(s)	63, 94, 230, 453
Lsp1109I	GCAGC	2 cut(s)	192, 274
MaeI	CTAG	4 cut(s)	26, 179, 297, 515
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	3 cut(s)	54, 79, 363
MboI	GATC	3 cut(s)	52, 77, 361
MboII	GAAGA	4 cut(s)	194, 272, 413, 492
MflI	RGATCY	2 cut(s)	77, 361
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	4 cut(s)	35, 65, 522, 550
MnlI	CCTC	8 cut(s)	162, 178, 222, 259, 434, 469, 522, 527
MseI	TTAA	2 cut(s)	395, 495
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	440, 441
Mva1269I	GAATGC	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	2 cut(s)	440, 441
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	3 cut(s)	52, 77, 361
NlaIII	CATG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	325
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	118, 129, 472
PkrI	GCNGC	2 cut(s)	207, 289
PspEI	GGTNACC	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	77, 361
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	395, 495
SatI	GCNGC	2 cut(s)	206, 288
Sau3AI	GATC	3 cut(s)	52, 77, 361
ScrFI	CCNGG	2 cut(s)	440, 441
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	8 cut(s)	10, 148, 233, 270, 289, 321, 413, 514
SfcI	CTRYAG	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	35, 65, 522, 550
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	4 cut(s)	26, 179, 297, 515
StyD4I	CCNGG	2 cut(s)	438, 439
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	420
TasI	AATT	4 cut(s)	35, 65, 522, 550
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	118, 129, 472
Tru1I	TTAA	2 cut(s)	395, 495
Tru9I	TTAA	2 cut(s)	395, 495
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	205, 287
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	403
TspMI	CCCGGG	1 cut(s)	439
XmaI	CCCGGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	508
XspI	CTAG	4 cut(s)	26, 179, 297, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.