Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Reverse (-)

31741222 .. 31741782

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG285700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTGGTTAAATGCGGTGGTCTGCCTCTGGCAGTAGTTGTGCTCGGAGGAATACTGTCCACGAAAATGAAGACCACAGTGGAATGGGAGCGCGTGCTTCAAAACATCAGTTGGCATTTGATCAGTGCTCAAGATCAAGTCTCCGCAATCTTAGCCCTAAGCTACGTTGACTTGCCTATCTATTTAAAATCATGTTTTCTCCATTTGGGTCTTTTCCCCGAAGATTCCTTCATAGAGAAAATGTATTTGATTCGACTGTGGGTTGCGGAAGGATTCTTACCACAACAAGGAGAAAAAATCGAAGAAGGGGTGGCTGAAAATTGCTTGAATCAGTTGCTTGATAGGTGCATGATCCAGGTGGCAACGCGAACATATCTTGGCAGCGTTAAAACCATTCGCATCCATGACGTTCTCAGAGATTTCTCTCTCACAAAGGGGAGGGAGGAAAATTTTCTTGGAATATATACAGGGCAAGAACACGAGCGTTATCAGCATCCCACCACTCGACCAAATCTCGAAGGCTTGCCATCCACGCTGCATTTGATGGGTATGCATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

186

Amino Acids

21.16

Weight (kDa)

6.15

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	71 - 141	4e-19	Disease resistance protein Winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	93, 367
AciI	CCGC	3 cut(s)	15, 144, 266
AclWI	GGATC	1 cut(s)	346
AcsI	RAATTY	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	101, 328
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw21I	GWGCWC	2 cut(s)	45, 130
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	381, 535
ApoI	RAATTY	1 cut(s)	448
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	261, 293
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	45, 130
BbvI	GCAGC	2 cut(s)	393, 522
BccI	CCATC	2 cut(s)	535, 538
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	382, 536
BlsI	GCNGC	2 cut(s)	383, 537
Bme1390I	CCNGG	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	408, 502
BpiI	GAAGAC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	356
BseGI	GGATG	3 cut(s)	399, 493, 527
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	427
BseXI	GCAGC	2 cut(s)	393, 522
Bsh1236I	CGCG	2 cut(s)	93, 367
BsiHKAI	GWGCWC	2 cut(s)	45, 130
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	45, 130
Bsp143I	GATC	3 cut(s)	120, 133, 351
BspACI	CCGC	3 cut(s)	15, 144, 266
BspCNI	CTCAG	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	93, 367
BspPI	GGATC	1 cut(s)	346
BssMI	GATC	3 cut(s)	120, 133, 351
BssSI	CACGAG	1 cut(s)	479
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	57, 79, 258
BstC8I	GCNNGC	2 cut(s)	95, 524
BstDEI	CTNAG	3 cut(s)	151, 158, 413
BstF5I	GGATG	3 cut(s)	399, 493, 527
BstFNI	CGCG	2 cut(s)	93, 367
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	3 cut(s)	123, 136, 354
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	120, 133, 351
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 490, 532
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	2 cut(s)	93, 367
BstV1I	GCAGC	2 cut(s)	393, 522
BstV2I	GAAGAC	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	399, 493, 527
BtsIMutI	CAGTG	2 cut(s)	84, 130
Cac8I	GCNNGC	2 cut(s)	95, 524
CfoI	GCGC	1 cut(s)	93
CviAII	CATG	3 cut(s)	192, 349, 404
CviJI	RGCY	4 cut(s)	155, 162, 314, 522
CviKI_1	RGCY	4 cut(s)	155, 162, 314, 522
DdeI	CTNAG	3 cut(s)	151, 158, 413
DpnI	GATC	3 cut(s)	122, 135, 353
DpnII	GATC	3 cut(s)	120, 133, 351
DraI	TTTAAA	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	555
FaeI	CATG	3 cut(s)	195, 352, 407
FaiI	YATR	8 cut(s)	193, 233, 350, 373, 405, 463, 465, 551
FatI	CATG	3 cut(s)	191, 348, 403
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	382, 536
FokI	GGATG	3 cut(s)	386, 480, 514
Fsp4HI	GCNGC	2 cut(s)	382, 536
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	382, 536
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	195, 352, 407
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	4 cut(s)	224, 250, 273, 328
Hpy166II	GTNNAC	2 cut(s)	60, 169
Hpy188I	TCNGA	2 cut(s)	47, 416
Hpy188III	TCNNGA	2 cut(s)	131, 515
Hpy8I	GTNNAC	2 cut(s)	60, 169
HpyAV	CCTTC	4 cut(s)	238, 263, 299, 512
HpyCH4III	ACNGT	3 cut(s)	57, 79, 258
HpyCH4IV	ACGT	2 cut(s)	165, 408
HpyCH4V	TGCA	3 cut(s)	348, 538, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 490, 532
HpyF3I	CTNAG	3 cut(s)	151, 158, 413
HpySE526I	ACGT	2 cut(s)	165, 408
Hsp92II	CATG	3 cut(s)	195, 352, 407
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	120, 133, 351
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	4 cut(s)	14, 341, 368, 453
Lsp1109I	GCAGC	2 cut(s)	393, 522
LweI	GCATC	2 cut(s)	408, 502
MaeII	ACGT	2 cut(s)	165, 408
MalI	GATC	3 cut(s)	122, 135, 353
MboI	GATC	3 cut(s)	120, 133, 351
MboII	GAAGA	3 cut(s)	82, 233, 314
MhlI	GDGCHC	2 cut(s)	45, 130
MluCI	AATT	2 cut(s)	319, 448
MnlI	CCTC	4 cut(s)	36, 41, 432, 436
Mph1103I	ATGCAT	1 cut(s)	555
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	3 cut(s)	9, 185, 387
MslI	CAYNNNNRTG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	2 cut(s)	93, 367
MwoI	GCNNNNNNNGC	3 cut(s)	152, 490, 532
NdeII	GATC	3 cut(s)	120, 133, 351
NlaIII	CATG	3 cut(s)	195, 352, 407
NsiI	ATGCAT	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	4 cut(s)	224, 250, 273, 328
PkrI	GCNGC	2 cut(s)	383, 537
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	9, 185, 387
SatI	GCNGC	2 cut(s)	382, 536
Sau3AI	GATC	3 cut(s)	120, 133, 351
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	2 cut(s)	45, 130
SetI	ASST	5 cut(s)	164, 168, 347, 360, 411
SfaNI	GCATC	2 cut(s)	408, 502
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	319, 448
SsiI	CCGC	3 cut(s)	15, 144, 266
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	57, 79, 258
TaiI	ACGT	2 cut(s)	168, 411
TaqI	TCGA	4 cut(s)	253, 300, 505, 516
TasI	AATT	2 cut(s)	319, 448
TfiI	GAWTC	4 cut(s)	224, 250, 273, 328
Tru1I	TTAA	3 cut(s)	9, 185, 387
Tru9I	TTAA	3 cut(s)	9, 185, 387
TscAI	CASTG	2 cut(s)	84, 130
TseI	GCWGC	2 cut(s)	381, 535
TspDTI	ATGAA	2 cut(s)	83, 220
TspRI	CASTG	2 cut(s)	84, 130
XapI	RAATTY	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	450
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.