Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004199.1

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Reverse (-)

256207 .. 256701

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004199.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgggaagtaaggtgatgctcaccactcgctttagggatgttgctgtgtatgcagatccaaggagcattatccatgagccgcggaagttaacagatgacgagagcttggaactgttcctcaagaaagcacttcccggagtggatgatatcccctctaacttgcagaaacttggaagagagatggtggttaaatgcggtggtctgcctctggcagtagttgtgctcggaggaatactgtccacgaaaatgaagaccacagtggaatgggagcgcgtgcttcaaaacatcagttggcatttgatcagtgctcaagatcaagtctccgcaatcttagccctaagctacgttgacttgcctatctatttaaaatcatgttttctccatttgggtcttttccccgaagattccttcatagagaaaatgtatttgattcgactgtgggttgcggaaggattcttaccacaacaaggagaagaaatcgaagaaggtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

164

Amino Acids

18.42

Weight (kDa)

5.22

Isoelectric Point (pI)

53.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	82, 273
AciI	CCGC	5 cut(s)	80, 82, 195, 324, 446
AclWI	GGATC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	281
AluBI	AGCT	2 cut(s)	105, 342
AluI	AGCT	2 cut(s)	105, 342
Alw21I	GWGCWC	2 cut(s)	225, 310
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	13, 25
BarI	GAAGNNNNNNTAC	2 cut(s)	441, 473
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	225, 310
BccI	CCATC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	104, 294
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	59, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	59, 80
BseGI	GGATG	2 cut(s)	43, 148
BseLI	CCNNNNNNNGG	1 cut(s)	467
Bsh1236I	CGCG	2 cut(s)	82, 273
BsiHKAI	GWGCWC	2 cut(s)	225, 310
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	225, 310
Bsp143I	GATC	3 cut(s)	55, 300, 313
BspACI	CCGC	5 cut(s)	80, 82, 195, 324, 446
BspFNI	CGCG	2 cut(s)	82, 273
BspPI	GGATC	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	59, 80
BssMI	GATC	3 cut(s)	55, 300, 313
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	114, 237, 259, 438
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	331, 338
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	43, 148
BstFNI	CGCG	2 cut(s)	82, 273
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	3 cut(s)	58, 303, 316
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	3 cut(s)	55, 300, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 332
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	2 cut(s)	82, 273
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	43, 148
BtsIMutI	CAGTG	2 cut(s)	264, 310
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	1 cut(s)	273
Cfr42I	CCGCGG	1 cut(s)	83
CviAII	CATG	2 cut(s)	74, 372
CviJI	RGCY	5 cut(s)	79, 105, 335, 342, 492
CviKI_1	RGCY	5 cut(s)	79, 105, 335, 342, 492
DdeI	CTNAG	2 cut(s)	331, 338
DpnI	GATC	3 cut(s)	57, 302, 315
DpnII	GATC	3 cut(s)	55, 300, 313
DraI	TTTAAA	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	2 cut(s)	77, 375
FaiI	YATR	4 cut(s)	51, 75, 373, 413
FatI	CATG	2 cut(s)	73, 371
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	2 cut(s)	50, 155
Fsp4HI	GCNGC	1 cut(s)	80
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	80
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	77, 375
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	2 cut(s)	90, 349
HindII	GTYRAC	2 cut(s)	90, 349
HinfI	GANTC	3 cut(s)	404, 430, 453
HpaI	GTTAAC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	13, 25
Hpy166II	GTNNAC	3 cut(s)	90, 240, 349
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	121, 311
Hpy8I	GTNNAC	3 cut(s)	90, 240, 349
HpyAV	CCTTC	3 cut(s)	418, 443, 479
HpyCH4III	ACNGT	4 cut(s)	114, 237, 259, 438
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	53, 163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 332
HpyF3I	CTNAG	2 cut(s)	331, 338
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	77, 375
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	300
KspAI	GTTAAC	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	83
Kzo9I	GATC	3 cut(s)	55, 300, 313
LmnI	GCTCC	2 cut(s)	63, 268
LpnPI	CCDG	2 cut(s)	148, 194
LweI	GCATC	1 cut(s)	6
MaeII	ACGT	1 cut(s)	345
MalI	GATC	3 cut(s)	57, 302, 315
MboI	GATC	3 cut(s)	55, 300, 313
MboII	GAAGA	5 cut(s)	186, 262, 413, 485, 494
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	225, 310
MnlI	CCTC	4 cut(s)	128, 163, 216, 221
MseI	TTAA	3 cut(s)	89, 189, 365
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	82, 273
MwoI	GCNNNNNNNGC	2 cut(s)	50, 332
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	55, 300, 313
NlaIII	CATG	2 cut(s)	77, 375
PfeI	GAWTC	3 cut(s)	404, 430, 453
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	245
SacII	CCGCGG	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	89, 189, 365
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	3 cut(s)	55, 300, 313
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	225, 310
SetI	ASST	5 cut(s)	15, 107, 344, 348, 490
SfaNI	GCATC	1 cut(s)	6
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	119, 309
SmoI	CTYRAG	2 cut(s)	119, 309
SsiI	CCGC	5 cut(s)	80, 82, 195, 324, 446
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	4 cut(s)	114, 237, 259, 438
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	2 cut(s)	433, 480
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	3 cut(s)	404, 430, 453
Tru1I	TTAA	3 cut(s)	89, 189, 365
Tru9I	TTAA	3 cut(s)	89, 189, 365
TscAI	CASTG	2 cut(s)	264, 310
TspDTI	ATGAA	2 cut(s)	263, 400
TspRI	CASTG	2 cut(s)	264, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.