Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001473

Physical Location & Seq

Genomic Coordinates Forward (+)

2999003 .. 3001684

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG040000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGTGGAATATGCTGTTTCGACTGCTGTCACAAGGCTCACAACTTGGTTGATTGAAGAAGCAGTTCTATTGAAAGGTGTGAGTGAGAAAGTTCAGCATCTCAGAGACAAACTGAGTTGGATGCAAGGTTTCCTCCAGGATGCTGATGCCGTGCAAGAGAGATCAGTAAGATTTCAGACTTTGGTGTCACAAATAAGAGAAGTGGCATTCGATGCTGAAGTGGCAATAGAAAGTTACATCAGCAAGGCAGCAGCACGAAGGTCATGGAGAAAAGTCCTGAAGCCAATTTATCGTCGCCGAATCCGAAAAAAAATCGAAAAGATCCAGGCCAGGATGGAGAAAATCTCCAAAGATAAGGAAATTTTCGGCACAGCTAGCATGAACAATCAGGAAGGAGGTGAAGCGCTGATTTCAAAAAATGAAATGTTGCGGTGGTGGAGACAACCTTCACCGAACATACAGGAAGATGATTTGATTGACCTTGCTGAAGACACCGAGGCGTTGATAACACAACTGTGCACTATGGAGAGGAGTCGTTCTGTAGTTTCTATTGTGGGCATGGGAGGTTTGGGCAAAACCACTCTAGCAAAAAAATTGTACAATCATCCTGATCTTGGGAACCAATTTCATTGTAGATCCTTTGTCTATGTATCCCAAGAGTTCAACAGGAGAGAGATTCTACAGAGAATCATTAAAGATGTAGGTTGTCCTCACAACAGAGATGGGTTGGGGAAACTAGAAGAGGAGATGATGGTAGAAATGCTGCATATGTTCCTGAAAGATAGGAGGTATCTGGTGGTTCTTGATGATATATGGAAAAAGGAGGTTTGGGATGGTCTTCAAGCTGCATTTCCTAGTGGGGAGATGGGAAGTAAGGTGATGGTCACCACTCGCTTTAGGGATGTTGCTGTATATGCTGATCCAAGGAGCACTCCCCATGAGCCACGGATGTTAACAGAAGACGAGAGCTTGGAACTTGTCCTCAAGAAGGCACTCCCGGGAGTGGATGACATCCCCTCTAACTTGCAGGACCTTGGAAGAGAGATGTTTGATCAAATCATTGACTTCACTCGCAAGAATTTTAAGTCGCTGAGGGTCTTAGAACTATATTGCGAGGATATAGATCCCTACAGGGGATTTAGTAAAGTTGGAGACTTAATTCAGTTGAGGTTTCTTGGACTTAGACACGTAATGTATCCTTTATATCTGTCATCCTTGAAGAACCTACAAACACTTGATATGAGATTCTGTGGTTCTGCTCCTTCGTGTATGTTCAGAGAGTTGAAGATAGAGAATCTGAGACATTTACTCTTACCTGAACGTCATCCATTTGATTTAACATTGGGTACCATGATCCATTTACAAACTCTAAAAGGTATAGAGGGCGGAAGATGGATAGAAGATGGCTTGGCCAAAATGATTAGTCTTCAACGACTGAAGATAAGAACATTATCACGAGATGGAGTGACATTAGTGATTTCTATTGCAGAAAGATTGCGCCACCTTCAATCGTTGTCGCTGACCAACAAGGAACGTGAAGATGAATTATTTCCACCACTTGAGGGACTATCTCGCTGTGACCATCTTCAGAAGCTTCGTTTGTGTGGAAAGATAGAGAAGCTACCTGATGCCAATGGATTCCCAGGAAACCTCGTAAAGCTAGTTTTGATGAGATCCAACCTCCCAAAAGATTCAGTAGTTATACTAGAGAGGATGCCAAACTTAAAGATGCTTTCCTTGGGGTATGGATCTTACCCCTTCAATGAATTGGTTTGCTCCTCAGAAGGATTTCCGCAACTGCAAGTTCTGCACTTAATTTGGGAGAGAATGGAGGTTTGGAAGGTGGAAGAAAGGGCACTGAAGAAGCTCAGGCAGCTAAAGATATACCGTTGTTCAAAATTACAGCAGGTTCCAGAAGGATTGAAGTCATTGGCTACTCTTCAGGAATTGGATATATGTGAATCACCTGAGTTTGAACACATGCTTCGAACTAATGAAGACCTGATCGAATTCACAAGAAAATACTCGATCAAATTCGTGCAAAGACATAGCTACGATTTTATGAAATGGTCTTCAATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0023052 GO:0033554 GO:0034050 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

694

Amino Acids

80.62

Weight (kDa)

8.72

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 91	1.6e-19	Rx N-terminal domain
NB-ARC	PF00931	164 - 333	3.3e-43	NB-ARC domain
AAA_22	PF13401	178 - 271	5.9e-07	AAA domain
LRR_14	PF23598	358 - 652	4.2e-22	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46530 AT3G46710 AT3G46730
fragaria_vesca	FvH4_5g24310 FvH4_5g24320
malus_domestica	MD07G1251200.v1.1
prunus_persica	Prupe.2G274900_v2.0.a1 Prupe.2G274900_v2.0.a1 Prupe.6G153200_v2.0.a1 Prupe.6G153300_v2.0.a1 Prupe.6G153400_v2.0.a1 Prupe.8G127100_v2.0.a1 Prupe.8G127200_v2.0.a1 Prupe.8G127300_v2.0.a1
pyrus_communis	pycom07g22380
rosa_chinensis	RchiOBHm_Chr1g0339701 RchiOBHm_Chr5g0004521 RchiOBHm_Chr5g0004531 RchiOBHm_Chr7g0214541
rosa_laevigata	RLG00000002734
rosa_multiflora	Rmu_sc0003758.1_g000008 Rmu_sc0003919.1_g000021 Rmu_sc0004199.1_g000044 Rmu_sc0004199.1_g000045 Rmu_sc0004199.1_g000046 Rmu_ssc0000287.1_g000011
rosa_roxburghii	Rroxscaffold_1G00071000 Rroxscaffold_3G00245250 Rroxscaffold_3G00245260
rosa_rugosa	Rorug04G0412200 Rorug07G0146200 Rorug07G0146300 Rorug07G0146400
rosa_samantha	Rh1AG157700 Rh1CG147400 Rh5AG040000 Rh5BG039000 Rh5BG039100 Rh5BG039200 Rh5BG039400 Rh5CG043200 Rh5DG038900 Rh7AG281600 Rh7BG273500 Rh7BG273600 Rh7CG300900 Rh7CG301000 Rh7DG285700
rosa_wichuraiana	Rw1G013060 Rw5G003820 Rw7G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	1897
Acc65I	GGTACC	1 cut(s)	1346
AccB1I	GGYRCC	1 cut(s)	1346
AciI	CCGC	3 cut(s)	430, 1386, 1793
AclWI	GGATC	7 cut(s)	316, 630, 914, 1118, 1348, 1668, 1756
AcoI	YGGCCR	1 cut(s)	1410
AcsI	RAATTY	4 cut(s)	360, 1078, 2009, 2033
AcuI	CTGAAG	7 cut(s)	237, 299, 507, 1457, 1571, 1880, 1925
AfaI	GTAC	2 cut(s)	599, 1348
AfeI	AGCGCT	1 cut(s)	405
AfiI	CCNNNNNNNGG	5 cut(s)	614, 988, 1003, 1133, 1562
AflIII	ACRYGT	1 cut(s)	1186
AjnI	CCWGG	4 cut(s)	135, 324, 329, 1642
AjuI	GAANNNNNNNTTGG	2 cut(s)	1819, 1851
AleI	CACNNNNGTG	1 cut(s)	514
AluBI	AGCT	9 cut(s)	374, 845, 969, 1594, 1621, 1660, 1867, 1876, 2052
AluI	AGCT	9 cut(s)	374, 845, 969, 1594, 1621, 1660, 1867, 1876, 2052
Alw21I	GWGCWC	2 cut(s)	521, 932
Alw26I	GTCTC	4 cut(s)	99, 433, 1146, 1294
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	7 cut(s)	316, 630, 914, 1118, 1348, 1668, 1756
Ama87I	CYCGRG	1 cut(s)	997
Aor51HI	AGCGCT	1 cut(s)	405
AoxI	GGCC	2 cut(s)	327, 1410
ApaLI	GTGCAC	1 cut(s)	517
ApeKI	GCWGC	5 cut(s)	248, 251, 763, 845, 1873
ApoI	RAATTY	4 cut(s)	360, 1078, 2009, 2033
Asp700I	GAANNNNTTC	3 cut(s)	63, 1548, 1788
Asp718I	GGTACC	1 cut(s)	1346
AspLEI	GCGC	2 cut(s)	406, 1500
AspS9I	GGNCC	1 cut(s)	1030
AsuC2I	CCSGG	2 cut(s)	998, 999
AsuHPI	GGTGA	5 cut(s)	410, 441, 877, 889, 1956
AsuII	TTCGAA	1 cut(s)	1987
AsuNHI	GCTAGC	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	997
AvaII	GGWCC	1 cut(s)	1030
BaeGI	GKGCMC	2 cut(s)	521, 1858
BalI	TGGCCA	1 cut(s)	1412
BanI	GGYRCC	1 cut(s)	1346
BauI	CACGAG	1 cut(s)	1455
BbsI	GAAGAC	6 cut(s)	495, 830, 966, 1418, 2004, 2064
Bbv12I	GWGCWC	2 cut(s)	521, 932
BbvCI	CCTCAGC	1 cut(s)	1091
BbvI	GCAGC	5 cut(s)	260, 263, 750, 832, 1885
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	4 cut(s)	137, 326, 331, 1644
BciVI	GTATCC	2 cut(s)	661, 1206
BclI	TGATCA	1 cut(s)	1051
BcnI	CCSGG	2 cut(s)	998, 999
BcoDI	GTCTC	4 cut(s)	99, 433, 1146, 1294
BfaI	CTAG	6 cut(s)	375, 584, 737, 855, 1661, 1706
BfmI	CTRYAG	3 cut(s)	540, 680, 1129
BfoI	RGCGCY	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	1897
BfuI	GTATCC	2 cut(s)	661, 1206
BisI	GCNGC	5 cut(s)	249, 252, 764, 846, 1874
BlsI	GCNGC	5 cut(s)	250, 253, 765, 847, 1875
Bme1390I	CCNGG	6 cut(s)	137, 326, 331, 998, 999, 1644
Bme18I	GGWCC	1 cut(s)	1030
BmeT110I	CYCGRG	1 cut(s)	997
BmgT120I	GGNCC	1 cut(s)	1030
BmiI	GGNNCC	3 cut(s)	620, 1348, 1911
BmrFI	CCNGG	6 cut(s)	137, 326, 331, 998, 999, 1644
BmsI	GCATC	8 cut(s)	106, 111, 130, 136, 202, 1618, 1704, 1719
BmtI	GCTAGC	1 cut(s)	378
BoxI	GACNNNNGTC	1 cut(s)	26
BpiI	GAAGAC	6 cut(s)	495, 830, 966, 1418, 2004, 2064
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	2 cut(s)	1091, 1868
Bpu14I	TTCGAA	1 cut(s)	1987
BpuEI	CTTGAG	2 cut(s)	968, 1580
BpuMI	CCSGG	2 cut(s)	998, 999
BsaAI	YACGTR	1 cut(s)	1189
BsaBI	GATNNNNATC	1 cut(s)	1122
BsaJI	CCNNGG	7 cut(s)	495, 923, 944, 997, 1033, 1642, 1737
Bsc4I	CCNNNNNNNGG	5 cut(s)	614, 988, 1003, 1133, 1562
Bse8I	GATNNNNATC	1 cut(s)	1122
BseBI	CCWGG	4 cut(s)	137, 326, 331, 1644
BseDI	CCNNGG	7 cut(s)	495, 923, 944, 997, 1033, 1642, 1737
BseJI	GATNNNNATC	1 cut(s)	1122
BseLI	CCNNNNNNNGG	5 cut(s)	614, 988, 1003, 1133, 1562
BseMII	CTCAG	7 cut(s)	104, 115, 1082, 1289, 1794, 1882, 1959
BseRI	GAGGAG	3 cut(s)	544, 758, 1768
BseSI	GKGCMC	2 cut(s)	521, 1858
BseXI	GCAGC	5 cut(s)	260, 263, 750, 832, 1885
BsgI	GTGCAG	1 cut(s)	1793
BshFI	GGCC	2 cut(s)	329, 1412
BshNI	GGYRCC	1 cut(s)	1346
BsiHKAI	GWGCWC	2 cut(s)	521, 932
BsiHKCI	CYCGRG	1 cut(s)	997
BsiSI	CCGG	1 cut(s)	998
BslFI	GGGAC	1 cut(s)	1578
BslI	CCNNNNNNNGG	5 cut(s)	614, 988, 1003, 1133, 1562
BsmAI	GTCTC	4 cut(s)	99, 433, 1146, 1294
BsmFI	GGGAC	1 cut(s)	1578
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	329, 1412
BsoBI	CYCGRG	1 cut(s)	997
Bsp119I	TTCGAA	1 cut(s)	1987
Bsp1286I	GDGCHC	3 cut(s)	521, 932, 1858
Bsp1407I	TGTACA	1 cut(s)	597
BspACI	CCGC	3 cut(s)	430, 1386, 1793
BspANI	GGCC	2 cut(s)	329, 1412
BspCNI	CTCAG	7 cut(s)	105, 114, 1083, 1290, 1793, 1881, 1960
BspLI	GGNNCC	3 cut(s)	620, 1348, 1911
BspMI	ACCTGC	1 cut(s)	1897
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	7 cut(s)	316, 630, 914, 1118, 1348, 1668, 1756
BspT104I	TTCGAA	1 cut(s)	1987
BspT107I	GGYRCC	1 cut(s)	1346
BsrGI	TGTACA	1 cut(s)	597
BssECI	CCNNGG	7 cut(s)	495, 923, 944, 997, 1033, 1642, 1737
BssSI	CACGAG	1 cut(s)	1455
BssT1I	CCWWGG	3 cut(s)	923, 1033, 1737
Bst2BI	CACGAG	1 cut(s)	1455
Bst2UI	CCWGG	4 cut(s)	137, 326, 331, 1644
Bst4CI	ACNGT	2 cut(s)	516, 1889
Bst6I	CTCTTC	3 cut(s)	735, 1033, 1944
BstAPI	GCANNNNNTGC	2 cut(s)	212, 1807
BstAUI	TGTACA	1 cut(s)	597
BstBAI	YACGTR	1 cut(s)	1189
BstBI	TTCGAA	1 cut(s)	1987
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	9 cut(s)	101, 113, 1091, 1099, 1181, 1298, 1780, 1868, 1968
BstDSI	CCRYGG	1 cut(s)	944
BstEII	GGTNACC	1 cut(s)	883
BstENI	CCTNNNNNAGG	1 cut(s)	986
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	2 cut(s)	406, 1500
BstMAI	GTCTC	4 cut(s)	99, 433, 1146, 1294
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 221, 375, 914, 1807, 1873
BstNI	CCWGG	4 cut(s)	137, 326, 331, 1644
BstNSI	RCATGY	1 cut(s)	1984
BstPAI	GACNNNNGTC	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	883
BstSCI	CCNGG	6 cut(s)	135, 324, 329, 996, 997, 1642
BstSFI	CTRYAG	3 cut(s)	540, 680, 1129
BstSLI	GKGCMC	2 cut(s)	521, 1858
BstV1I	GCAGC	5 cut(s)	260, 263, 750, 832, 1885
BstV2I	GAAGAC	6 cut(s)	495, 830, 966, 1418, 2004, 2064
BstX2I	RGATCY	5 cut(s)	321, 635, 1123, 1673, 1748
BstYI	RGATCY	5 cut(s)	321, 635, 1123, 1673, 1748
BsuI	GTATCC	2 cut(s)	661, 1206
BsuRI	GGCC	2 cut(s)	329, 1412
BtgI	CCRYGG	1 cut(s)	944
BtsIMutI	CAGTG	1 cut(s)	1856
BveI	ACCTGC	1 cut(s)	1897
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	2 cut(s)	406, 1500
Cfr13I	GGNCC	1 cut(s)	1030
Cfr9I	CCCGGG	1 cut(s)	997
Csp6I	GTAC	2 cut(s)	598, 1347
CviAII	CATG	6 cut(s)	264, 379, 559, 938, 1351, 1981
CviQI	GTAC	2 cut(s)	598, 1347
DdeI	CTNAG	9 cut(s)	101, 113, 1091, 1099, 1181, 1298, 1780, 1868, 1968
DrdI	GACNNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	1410
Eam1104I	CTCTTC	3 cut(s)	735, 1033, 1944
EarI	CTCTTC	3 cut(s)	735, 1033, 1944
EciI	GGCGGA	1 cut(s)	1401
Eco130I	CCWWGG	3 cut(s)	923, 1033, 1737
Eco47I	GGWCC	1 cut(s)	1030
Eco47III	AGCGCT	1 cut(s)	405
Eco57I	CTGAAG	7 cut(s)	237, 299, 507, 1457, 1571, 1880, 1925
Eco88I	CYCGRG	1 cut(s)	997
Eco91I	GGTNACC	1 cut(s)	883
EcoNI	CCTNNNNNAGG	1 cut(s)	986
EcoO109I	RGGNCCY	1 cut(s)	1030
EcoO65I	GGTNACC	1 cut(s)	883
EcoRI	GAATTC	1 cut(s)	2009
EcoRII	CCWGG	4 cut(s)	135, 324, 329, 1642
EcoT14I	CCWWGG	3 cut(s)	923, 1033, 1737
ErhI	CCWWGG	3 cut(s)	923, 1033, 1737
FaeI	CATG	6 cut(s)	267, 382, 562, 941, 1354, 1984
FaqI	GGGAC	1 cut(s)	1578
FatI	CATG	6 cut(s)	263, 378, 558, 937, 1350, 1980
FauNDI	CATATG	1 cut(s)	768
FbaI	TGATCA	1 cut(s)	1051
Fnu4HI	GCNGC	5 cut(s)	249, 252, 764, 846, 1874
Fsp4HI	GCNGC	5 cut(s)	249, 252, 764, 846, 1874
FspBI	CTAG	6 cut(s)	375, 584, 737, 855, 1661, 1706
GlaI	GCGC	2 cut(s)	405, 1499
GluI	GCNGC	5 cut(s)	249, 252, 764, 846, 1874
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	329, 1412
HapII	CCGG	1 cut(s)	998
HhaI	GCGC	2 cut(s)	406, 1500
Hin1II	CATG	6 cut(s)	267, 382, 562, 941, 1354, 1984
Hin6I	GCGC	2 cut(s)	404, 1498
HinP1I	GCGC	2 cut(s)	404, 1498
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	1592
HinfI	GANTC	9 cut(s)	300, 532, 676, 687, 1245, 1294, 1638, 1691, 1961
HpaI	GTTAAC	1 cut(s)	954
HpaII	CCGG	1 cut(s)	998
HphI	GGTGA	5 cut(s)	410, 441, 877, 889, 1956
Hpy166II	GTNNAC	2 cut(s)	519, 954
Hpy188I	TCNGA	7 cut(s)	104, 177, 305, 1277, 1299, 1590, 1783
Hpy188III	TCNNGA	9 cut(s)	277, 389, 608, 775, 803, 985, 1455, 1913, 1943
Hpy8I	GTNNAC	2 cut(s)	519, 954
Hpy99I	CGWCG	1 cut(s)	297
HpyCH4III	ACNGT	2 cut(s)	516, 1889
HpyCH4IV	ACGT	3 cut(s)	1188, 1321, 1534
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 221, 375, 914, 1807, 1873
HpyF3I	CTNAG	9 cut(s)	101, 113, 1091, 1099, 1181, 1298, 1780, 1868, 1968
HpySE526I	ACGT	3 cut(s)	1188, 1321, 1534
Hsp92II	CATG	6 cut(s)	267, 382, 562, 941, 1354, 1984
HspAI	GCGC	2 cut(s)	404, 1498
KpnI	GGTACC	1 cut(s)	1350
Ksp22I	TGATCA	1 cut(s)	1051
KspAI	GTTAAC	1 cut(s)	954
LmnI	GCTCC	3 cut(s)	927, 1264, 1781
Lsp1109I	GCAGC	5 cut(s)	260, 263, 750, 832, 1885
LweI	GCATC	8 cut(s)	106, 111, 130, 136, 202, 1618, 1704, 1719
MaeI	CTAG	6 cut(s)	375, 584, 737, 855, 1661, 1706
MaeII	ACGT	3 cut(s)	1188, 1321, 1534
MaeIII	GTNAC	6 cut(s)	28, 186, 233, 883, 1465, 1577
MflI	RGATCY	5 cut(s)	321, 635, 1123, 1673, 1748
MhlI	GDGCHC	3 cut(s)	521, 932, 1858
MlsI	TGGCCA	1 cut(s)	1412
MluNI	TGGCCA	1 cut(s)	1412
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	3 cut(s)	98, 1129, 1701
Mox20I	TGGCCA	1 cut(s)	1412
MroXI	GAANNNNTTC	3 cut(s)	63, 1548, 1788
MscI	TGGCCA	1 cut(s)	1412
MseI	TTAA	7 cut(s)	693, 953, 1083, 1157, 1337, 1724, 1814
MslI	CAYNNNNRTG	1 cut(s)	514
Msp20I	TGGCCA	1 cut(s)	1412
MspI	CCGG	1 cut(s)	998
MspR9I	CCNGG	6 cut(s)	137, 326, 331, 998, 999, 1644
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	4 cut(s)	137, 326, 331, 1644
MwoI	GCNNNNNNNGC	6 cut(s)	212, 221, 375, 914, 1807, 1873
NciI	CCSGG	2 cut(s)	998, 999
NdeI	CATATG	1 cut(s)	768
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	6 cut(s)	267, 382, 562, 941, 1354, 1984
NlaIV	GGNNCC	3 cut(s)	620, 1348, 1911
NmuCI	GTSAC	5 cut(s)	28, 186, 883, 1465, 1577
NspI	RCATGY	1 cut(s)	1984
NspV	TTCGAA	1 cut(s)	1987
OliI	CACNNNNGTG	1 cut(s)	514
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PctI	GAATGC	1 cut(s)	206
PdmI	GAANNNNTTC	3 cut(s)	63, 1548, 1788
PfeI	GAWTC	8 cut(s)	300, 676, 687, 1245, 1294, 1638, 1691, 1961
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	5 cut(s)	250, 253, 765, 847, 1875
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
Ppu21I	YACGTR	1 cut(s)	1189
PpuMI	RGGWCCY	1 cut(s)	1030
PshAI	GACNNNNGTC	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	1030
Psp6I	CCWGG	4 cut(s)	135, 324, 329, 1642
PspEI	GGTNACC	1 cut(s)	883
PspGI	CCWGG	4 cut(s)	135, 324, 329, 1642
PspN4I	GGNNCC	3 cut(s)	620, 1348, 1911
PspPI	GGNCC	1 cut(s)	1030
PspPPI	RGGWCCY	1 cut(s)	1030
PsuI	RGATCY	5 cut(s)	321, 635, 1123, 1673, 1748
RsaI	GTAC	2 cut(s)	599, 1348
RsaNI	GTAC	2 cut(s)	598, 1347
RseI	CAYNNNNRTG	1 cut(s)	514
SaqAI	TTAA	7 cut(s)	693, 953, 1083, 1157, 1337, 1724, 1814
SatI	GCNGC	5 cut(s)	249, 252, 764, 846, 1874
Sau96I	GGNCC	1 cut(s)	1030
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	6 cut(s)	137, 326, 331, 998, 999, 1644
SduI	GDGCHC	3 cut(s)	521, 932, 1858
SfaNI	GCATC	8 cut(s)	106, 111, 130, 136, 202, 1618, 1704, 1719
SfcI	CTRYAG	3 cut(s)	540, 680, 1129
SfuI	TTCGAA	1 cut(s)	1987
SinI	GGWCC	1 cut(s)	1030
SmaI	CCCGGG	1 cut(s)	999
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	2 cut(s)	983, 1559
SmoI	CTYRAG	2 cut(s)	983, 1559
SsiI	CCGC	3 cut(s)	430, 1386, 1793
SspMI	CTAG	6 cut(s)	375, 584, 737, 855, 1661, 1706
StyD4I	CCNGG	6 cut(s)	135, 324, 329, 996, 997, 1642
StyI	CCWWGG	3 cut(s)	923, 1033, 1737
TaaI	ACNGT	2 cut(s)	516, 1889
TaiI	ACGT	3 cut(s)	1191, 1324, 1537
TaqI	TCGA	6 cut(s)	20, 210, 315, 1987, 2007, 2027
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	8 cut(s)	300, 676, 687, 1245, 1294, 1638, 1691, 1961
Tru1I	TTAA	7 cut(s)	693, 953, 1083, 1157, 1337, 1724, 1814
Tru9I	TTAA	7 cut(s)	693, 953, 1083, 1157, 1337, 1724, 1814
TscAI	CASTG	1 cut(s)	1863
TseFI	GTSAC	5 cut(s)	28, 186, 883, 1465, 1577
TseI	GCWGC	5 cut(s)	248, 251, 763, 845, 1873
Tsp45I	GTSAC	5 cut(s)	28, 186, 883, 1465, 1577
TspDTI	ATGAA	7 cut(s)	395, 435, 617, 1557, 1779, 2010, 2078
TspGWI	ACGGA	1 cut(s)	961
TspMI	CCCGGG	1 cut(s)	997
TspRI	CASTG	1 cut(s)	1863
VneI	GTGCAC	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	1030
XagI	CCTNNNNNAGG	1 cut(s)	986
XapI	RAATTY	4 cut(s)	360, 1078, 2009, 2033
XceI	RCATGY	1 cut(s)	1984
XmaI	CCCGGG	1 cut(s)	997
XmnI	GAANNNNTTC	3 cut(s)	63, 1548, 1788
XspI	CTAG	6 cut(s)	375, 584, 737, 855, 1661, 1706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.